Click here to switch to the map view.

The map label for this gene is ybfI [H]

Identifier: 238024248

GI number: 238024248

Start: 1008572

End: 1009381

Strand: Direct

Name: ybfI [H]

Synonym: bglu_2g08300

Alternate gene names: 238024248

Gene position: 1008572-1009381 (Clockwise)

Preceding gene: 238024247

Following gene: 238024250

Centisome position: 35.67

GC content: 70.49

Gene sequence:

>810_bases
ATGAAAGACCGTGTCGAATACACCCGCAGCCGCGACGTCCCCGGACTCGTGCTGGGCGACGCGCGTTTCAGCGAATTCCG
GTTCGATCGCCATTACCACCTCGATTTCCACGTCGGCGTGGTCACCGAGGGCGTGCAGCGCCAGCAGTTCGCCGGCCGCA
CCGTCCTGCTCGGTCCGGGCAGCGTCTCGATCATGCCGCCGGGCGAGGTCCACGACGGCACGCGTGCCGGCGACGATGCC
TACACGCTGAAGACGTTCCGGCTGCCGACCGAACTGATGGCGGGCGTGGTCGAGGAACTGTCGGGCCGCCCCGGCGAGCC
GGCGCTGCGCGGCGCGGCGCTCCACGACGCCTCGCTCGCGCAGCGGCTCGGCGGCCTGCACGCGGCGCTGCGCGTCGAGC
AGGCCGAGGCGGTGCTCGGCGTGCAATCGGCCTGGCTCATGCTGCTCGAACGCCTGTTCGCCGCCTCGGCAGCGCTGACG
CCGCGCGAGGTGGGCGGCGCGCTGCCGGCGGCGCAATGGGCACGCGTGCGCGACTACTGCGAGGCGCATCTGGCCGAGAA
GATCACGCTCGACGAACTGGCCGCGCTCTGCGGCGTCGATCGCTTTGTATTCCTGAAGCTGTTCAAGCGCACCACCGCGA
TGACCCCGCACGCATGGCTGGTGCGGCTGCGCCTCGAACGCGCGTGCCTGATGCTGCATCGCGGCACGCAGTCGATCGCC
GAGGTGGCGCAGGCGGTCGGCTTCTATGACCAGAGCCATTTCAACCGCGCGTTCCGGCGCGCGTTCGGCTGCGCACCGTC
GCGCTATTGA

Upstream 100 bases:

>100_bases
ATGCTAAGCTCGATGCACCTGGCGCCGCGGCCCGCCCGGCCAATCGCGGCGGCGCGGTGCCGCGCGCCTGGTTTCCGTTT
CCCGTCCCGCAGCCGCTTCC

Downstream 100 bases:

>100_bases
TACGCTATTGACACGCCATCCGGGGGCAACCGTGGTGCGCTGTTCACGCGTTCCCCGGGTGGTGGCCGGCGCCGCTCAGG
CAGCCGGCGCCTGGTCGGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MKDRVEYTRSRDVPGLVLGDARFSEFRFDRHYHLDFHVGVVTEGVQRQQFAGRTVLLGPGSVSIMPPGEVHDGTRAGDDA
YTLKTFRLPTELMAGVVEELSGRPGEPALRGAALHDASLAQRLGGLHAALRVEQAEAVLGVQSAWLMLLERLFAASAALT
PREVGGALPAAQWARVRDYCEAHLAEKITLDELAALCGVDRFVFLKLFKRTTAMTPHAWLVRLRLERACLMLHRGTQSIA
EVAQAVGFYDQSHFNRAFRRAFGCAPSRY

Sequences:

>Translated_269_residues
MKDRVEYTRSRDVPGLVLGDARFSEFRFDRHYHLDFHVGVVTEGVQRQQFAGRTVLLGPGSVSIMPPGEVHDGTRAGDDA
YTLKTFRLPTELMAGVVEELSGRPGEPALRGAALHDASLAQRLGGLHAALRVEQAEAVLGVQSAWLMLLERLFAASAALT
PREVGGALPAAQWARVRDYCEAHLAEKITLDELAALCGVDRFVFLKLFKRTTAMTPHAWLVRLRLERACLMLHRGTQSIA
EVAQAVGFYDQSHFNRAFRRAFGCAPSRY
>Mature_269_residues
MKDRVEYTRSRDVPGLVLGDARFSEFRFDRHYHLDFHVGVVTEGVQRQQFAGRTVLLGPGSVSIMPPGEVHDGTRAGDDA
YTLKTFRLPTELMAGVVEELSGRPGEPALRGAALHDASLAQRLGGLHAALRVEQAEAVLGVQSAWLMLLERLFAASAALT
PREVGGALPAAQWARVRDYCEAHLAEKITLDELAALCGVDRFVFLKLFKRTTAMTPHAWLVRLRLERACLMLHRGTQSIA
EVAQAVGFYDQSHFNRAFRRAFGCAPSRY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790339, Length=256, Percent_Identity=23.828125, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29755; Mature: 29755

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDRVEYTRSRDVPGLVLGDARFSEFRFDRHYHLDFHVGVVTEGVQRQQFAGRTVLLGPG
CCCCHHHHHCCCCCEEEECCCHHHHHHCCCEEEEEEEEHHHHCCHHHHHHCCCEEEECCC
SVSIMPPGEVHDGTRAGDDAYTLKTFRLPTELMAGVVEELSGRPGEPALRGAALHDASLA
CEEECCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
QRLGGLHAALRVEQAEAVLGVQSAWLMLLERLFAASAALTPREVGGALPAAQWARVRDYC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
EAHLAEKITLDELAALCGVDRFVFLKLFKRTTAMTPHAWLVRLRLERACLMLHRGTQSIA
HHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHH
EVAQAVGFYDQSHFNRAFRRAFGCAPSRY
HHHHHHCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKDRVEYTRSRDVPGLVLGDARFSEFRFDRHYHLDFHVGVVTEGVQRQQFAGRTVLLGPG
CCCCHHHHHCCCCCEEEECCCHHHHHHCCCEEEEEEEEHHHHCCHHHHHHCCCEEEECCC
SVSIMPPGEVHDGTRAGDDAYTLKTFRLPTELMAGVVEELSGRPGEPALRGAALHDASLA
CEEECCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
QRLGGLHAALRVEQAEAVLGVQSAWLMLLERLFAASAALTPREVGGALPAAQWARVRDYC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
EAHLAEKITLDELAALCGVDRFVFLKLFKRTTAMTPHAWLVRLRLERACLMLHRGTQSIA
HHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHH
EVAQAVGFYDQSHFNRAFRRAFGCAPSRY
HHHHHHCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]