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The map label for this gene is sdhD [H]

Identifier: 238024242

GI number: 238024242

Start: 1002831

End: 1003199

Strand: Direct

Name: sdhD [H]

Synonym: bglu_2g08240

Alternate gene names: 238024242

Gene position: 1002831-1003199 (Clockwise)

Preceding gene: 238024241

Following gene: 238024243

Centisome position: 35.47

GC content: 62.6

Gene sequence:

>369_bases
ATGGCAGGCAATAACCGAATCGGCTCGAAGCGCCTCGTCGTCGGCGCCCATTACGGCCTGCGCGACTGGCTCGCGCAACG
GATCACCGCGGTCATCATGGCGGTCTACACCGTGATCCTGCTGGCCTGGTTCTTCAGCGCCCGCGATTTCTCCTACGACG
GCTGGGCGTCGATCTTCTCGACCCAGTGGATGAAGCTGGCGACCTTCGTCACGCTGCTCGCGCTGTTCTACCACGCCTGG
GTCGGCATTCGCGACATCTGGATGGATTACGTGAAGCCTGTCGGCGTGCGGCTGGTGCTGCAATCGCTGACCATCGTCTG
GCTGCTCGCGTGCGCGGGCTACGCTGCGCAGATTCTCTGGAGAGTTTAA

Upstream 100 bases:

>100_bases
ACCAAGGAAGGCGGCAAGCGCACCGCCGCCGTCGTGTTCGTGGTGTCGCTGGCCTTGACGCTGGTCGTCGCGCTCAAACT
GTTCGGAGCATTCTAAGAAA

Downstream 100 bases:

>100_bases
AAGCATGGCTGCAATCAACACTTCCCTGCCGCGTCGCAAGTTCGACGTGGTCATCGTCGGCGCGGGCGGCTCGGGGATGC
GCGCATCGCTGCAACTCGCG

Product: succinate dehydrogenase, cytochrome b subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MAGNNRIGSKRLVVGAHYGLRDWLAQRITAVIMAVYTVILLAWFFSARDFSYDGWASIFSTQWMKLATFVTLLALFYHAW
VGIRDIWMDYVKPVGVRLVLQSLTIVWLLACAGYAAQILWRV

Sequences:

>Translated_122_residues
MAGNNRIGSKRLVVGAHYGLRDWLAQRITAVIMAVYTVILLAWFFSARDFSYDGWASIFSTQWMKLATFVTLLALFYHAW
VGIRDIWMDYVKPVGVRLVLQSLTIVWLLACAGYAAQILWRV
>Mature_121_residues
AGNNRIGSKRLVVGAHYGLRDWLAQRITAVIMAVYTVILLAWFFSARDFSYDGWASIFSTQWMKLATFVTLLALFYHAWV
GIRDIWMDYVKPVGVRLVLQSLTIVWLLACAGYAAQILWRV

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=83, Percent_Identity=31.3253012048193, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13976; Mature: 13845

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNNRIGSKRLVVGAHYGLRDWLAQRITAVIMAVYTVILLAWFFSARDFSYDGWASIFS
CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
TQWMKLATFVTLLALFYHAWVGIRDIWMDYVKPVGVRLVLQSLTIVWLLACAGYAAQILW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RV
CC
>Mature Secondary Structure 
AGNNRIGSKRLVVGAHYGLRDWLAQRITAVIMAVYTVILLAWFFSARDFSYDGWASIFS
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
TQWMKLATFVTLLALFYHAWVGIRDIWMDYVKPVGVRLVLQSLTIVWLLACAGYAAQILW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7698664; 12704232 [H]