| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is lhr [C]
Identifier: 238024153
GI number: 238024153
Start: 869100
End: 871892
Strand: Direct
Name: lhr [C]
Synonym: bglu_2g07310
Alternate gene names: 238024153
Gene position: 869100-871892 (Clockwise)
Preceding gene: 238024152
Following gene: 238024154
Centisome position: 30.74
GC content: 74.79
Gene sequence:
>2793_bases ATGAGCGGGGCGCGCGGCACCGGCGAGCGGCACGGCCGTGAACACGATGGCGCCGCTGCCGGCGGCGATCCCGCCGCGTC GCGCGACGCCGCGGATGCGGCGGATGCGCAGCGCCGCCGGCCGCGCGGGCGCCGCATGCCGCGCACGCGCGCGGCGCAGG CCAAGCTCGATGCGGCCGCCCAGGCGTTTCGGCCCGCGCCGTTCGCCTTCGACGCGGCCGCCGCGCGCCGGCCGATCGGG CCGCGCATCGCGGCGTGGCTGGCGGCGCAGGACCGGCAGCCGTTCGCGTTCCAGGAGGAGGTCTGGCGCGAGATCGCACG CGGCGCGAGCGGGCTGCTGCATGCCACCACGGGGGCCGGCAAGACCTGGGCGGTCTGGCTCGGCGCGCTGGCCGCCTATG CGGGCGACGAGGGGGGCGGCGCCGCCGCTGCCGACGGCGCGGATCTCGACGGCGCGGATCTCGACGGCGCGCGCGCGGCC CCTGCGGAGCCGTGCGCGCCGGCCGCCGTGCGCGCGGGCCGCCTGCCGGCGCCGCTGACCGTGCTCTGGGTCACGCCGAT GCGCGCGCTCGCGGCCGACACGGCGCGTGCCCTGCAAGCGGCCGTGTCGGGCCTCGGCGTGCCGTGGACGGTGGGGCTGC GCACCGGCGACACGCCATCGGCCGAGCGCAGCCGGCAGAACCGCCGCCTGCCGTCGGCGCTCGTCACCACGCCCGAGAGC CTGTCGCTGCTGCTCACGCGCGCCGACGCGCGCGAGACGCTCGCGCGGCTGCGGCTGGTGGTGGTGGACGAGTGGCACGA ACTGCTCGGCAACAAGCGCGGCACCCAGACCCAGCTCGCCCTCGCGCGGCTCGCCGGCTGGCGCCCGGCATTGCAGGTAT GGGGGCTGTCGGCCACGCTCGGCAATCTCGCGCTCGCGCACGACGCGCTGCTGCACGCGGTGCGCACGCCGCGCGTGATG GTGCGCGGCGCGCAGCCGAAGCCGCTGGTGGTCGATACGCTGATACCCGAGACCATCGAGCGCTTCCCGTGGGCCGGCCA TCTCGGCATGCGGCAGGTGGGCGCCGTGGCCGACCAGATCGACGCCGCGCGCAGCTCGCTGGTGTTCACCAACACGCGCT CGCAGGCGGAAGGCTGGTATCAGGCGCTGCTTGAACGGCGGCCCGACTGGGCCGGGCTGATCGCGCTGCATCACGGCTCG CTCGACCAGTCGGTGCGCGACTGGGTCGAACTCGGCCTCAAGAACGGCAAGCTCAAGGCCGTGGTCTGCACCTCGAGCCT CGACCTCGGGGTCGATTTCCTGCCGGTCGAGCGCGTGTTCCAGATCGGCTCGCCGAAGGGCGTGGCGCGCCTGATGCAGC GCGCCGGCCGCTCGGGCCACGCGCCCGGCCGCACCTCGCGCGTGACCATCGTGCCGACCCATGCGCTGGAGCTGGTGGAG GCCGCCGCCGCGCGCTGGGCCATCGGCGCGGGCCGCATCGAGGGGCGCGAGATGCCGCTCAAGCCGCTCGACGTGCTGGT GCAGCATCTGGTGACGGTGGCGATCGGCGGCGGCTTCAGGCCGCGCGCGCTCTACGACGAGGTGCGCACGGCCTACGCCT ATCGCGATCTCGCGCAGGCCGAGTTCGACTGGGCACTGGCCTTCGTCGAGCGCGGCGGCGCCTCGCTGTCGGCCTATCCC GACTATCACCGCGTGGCGGCCGATGCCGACGGCGTCTATCGCGTGCCGCGCGAGGACCTGGCGCGGCGGCATCGCAACAA CGTCGGCACGATCGTGGCCAATGCCAGCATCAACGTGGCCTGGCTGACGGGCGGGCGCATCGGCACGATCGAGGAGGCAT TCGTCTCGCGCCTGAAGCCCGGCGACGTCTTCACCTTCGCCGGCCGCGCGCTCGAACTCGTGCGCGTGCGCGACATGACG GCCTACGTGCGGCGCGCGGCCCGCTCGCGCGGCGCGCTCGCGCAATGGGCGGGCAGCCGGATGCCGCTGTCGTCGGAACT GGCCGACGCGGTGCTGGTGATGCTCGCGCGCGCGCGCGACGGCGCGGCCGACGGCGAACCGGAGCTGCGCGCGGTGGCGC CGCTGCTGGCGCTGCAGGCACGCTGGTCGGCGCTGCCGGGCCCCGGCGTGCTGGTGGTCGAGTGCCTGCGCACGCGCGAG GGCCATCACCTGTTCTGCTATCCGTTCGCCGGCCGCATGGCGCATGTCGGGCTCGGCGCGCTGATCGCGTGGCGCGTCGC GCGCGAGCAGCCCAGCACGTTCTCGATCTCGGTGAACGACTACGGCTTCGAACTGCTGTCGGCGCAGCCTTTCGACTGGC CGGCGCTGATCGACGGCGGCCTGTTTTCGCCGGACCGGCTGGAGCAGGACATGCTCGCGAGCCTCAACGCCTCCGAGCTG GCCGCGCGCCGGTTCCGGGAGATCGCGCGCGTCTCGGGGCTGGTGTTCCAGGGCCATCCCGGGCAGCAGAAGAGCGCGCG CCAGCTGCAGGCGTCGAGCAGCCTGTTCTACGAGGTGTTCCGCCAGCACGACCGCGAGAACCTGCTGCTCGCGCAGGCCG AGCGCGAGGTCATGCTGGAGGAGCTCGAGGCGCGGCGCATCCGGGACGCGCTCTCGCGCATGCGCGAGAGCCGGCTGGTG CTGACGCAGCCGGCCCGGCCCACGCCGTTCGCGTTTCCGCTGATCGTCGCGCGCCTGCGCGAGAAGGTCAGCACCGAGCA ACTGGCCGATCGCGTCGAGCGCATGCTGGCGGCGCTCGAGAATACGGCGCGGCGCGAGGCGGCGCATGACTGA
Upstream 100 bases:
>100_bases CCGTGCGGTTCCCGCGCATGCTGCGCTGGCGCACCGACAAGTCGATCGACGAGGCGGACACGCTGGAGATGCTCAAGGGC TTTCTGAACGGAGCGCCGGC
Downstream 100 bases:
>100_bases GGAGACCCTGACGATCGAGCTGGCCGGGCATGCGCTGCAGCTGTCGGCCGGGCGCGCGGCGTTCGATCCGGCGCGGCGCA GCCTGTTCGTGGCGGACGCG
Product: putative DEAD/DEAH box helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 930; Mature: 929
Protein sequence:
>930_residues MSGARGTGERHGREHDGAAAGGDPAASRDAADAADAQRRRPRGRRMPRTRAAQAKLDAAAQAFRPAPFAFDAAAARRPIG PRIAAWLAAQDRQPFAFQEEVWREIARGASGLLHATTGAGKTWAVWLGALAAYAGDEGGGAAAADGADLDGADLDGARAA PAEPCAPAAVRAGRLPAPLTVLWVTPMRALAADTARALQAAVSGLGVPWTVGLRTGDTPSAERSRQNRRLPSALVTTPES LSLLLTRADARETLARLRLVVVDEWHELLGNKRGTQTQLALARLAGWRPALQVWGLSATLGNLALAHDALLHAVRTPRVM VRGAQPKPLVVDTLIPETIERFPWAGHLGMRQVGAVADQIDAARSSLVFTNTRSQAEGWYQALLERRPDWAGLIALHHGS LDQSVRDWVELGLKNGKLKAVVCTSSLDLGVDFLPVERVFQIGSPKGVARLMQRAGRSGHAPGRTSRVTIVPTHALELVE AAAARWAIGAGRIEGREMPLKPLDVLVQHLVTVAIGGGFRPRALYDEVRTAYAYRDLAQAEFDWALAFVERGGASLSAYP DYHRVAADADGVYRVPREDLARRHRNNVGTIVANASINVAWLTGGRIGTIEEAFVSRLKPGDVFTFAGRALELVRVRDMT AYVRRAARSRGALAQWAGSRMPLSSELADAVLVMLARARDGAADGEPELRAVAPLLALQARWSALPGPGVLVVECLRTRE GHHLFCYPFAGRMAHVGLGALIAWRVAREQPSTFSISVNDYGFELLSAQPFDWPALIDGGLFSPDRLEQDMLASLNASEL AARRFREIARVSGLVFQGHPGQQKSARQLQASSSLFYEVFRQHDRENLLLAQAEREVMLEELEARRIRDALSRMRESRLV LTQPARPTPFAFPLIVARLREKVSTEQLADRVERMLAALENTARREAAHD
Sequences:
>Translated_930_residues MSGARGTGERHGREHDGAAAGGDPAASRDAADAADAQRRRPRGRRMPRTRAAQAKLDAAAQAFRPAPFAFDAAAARRPIG PRIAAWLAAQDRQPFAFQEEVWREIARGASGLLHATTGAGKTWAVWLGALAAYAGDEGGGAAAADGADLDGADLDGARAA PAEPCAPAAVRAGRLPAPLTVLWVTPMRALAADTARALQAAVSGLGVPWTVGLRTGDTPSAERSRQNRRLPSALVTTPES LSLLLTRADARETLARLRLVVVDEWHELLGNKRGTQTQLALARLAGWRPALQVWGLSATLGNLALAHDALLHAVRTPRVM VRGAQPKPLVVDTLIPETIERFPWAGHLGMRQVGAVADQIDAARSSLVFTNTRSQAEGWYQALLERRPDWAGLIALHHGS LDQSVRDWVELGLKNGKLKAVVCTSSLDLGVDFLPVERVFQIGSPKGVARLMQRAGRSGHAPGRTSRVTIVPTHALELVE AAAARWAIGAGRIEGREMPLKPLDVLVQHLVTVAIGGGFRPRALYDEVRTAYAYRDLAQAEFDWALAFVERGGASLSAYP DYHRVAADADGVYRVPREDLARRHRNNVGTIVANASINVAWLTGGRIGTIEEAFVSRLKPGDVFTFAGRALELVRVRDMT AYVRRAARSRGALAQWAGSRMPLSSELADAVLVMLARARDGAADGEPELRAVAPLLALQARWSALPGPGVLVVECLRTRE GHHLFCYPFAGRMAHVGLGALIAWRVAREQPSTFSISVNDYGFELLSAQPFDWPALIDGGLFSPDRLEQDMLASLNASEL AARRFREIARVSGLVFQGHPGQQKSARQLQASSSLFYEVFRQHDRENLLLAQAEREVMLEELEARRIRDALSRMRESRLV LTQPARPTPFAFPLIVARLREKVSTEQLADRVERMLAALENTARREAAHD >Mature_929_residues SGARGTGERHGREHDGAAAGGDPAASRDAADAADAQRRRPRGRRMPRTRAAQAKLDAAAQAFRPAPFAFDAAAARRPIGP RIAAWLAAQDRQPFAFQEEVWREIARGASGLLHATTGAGKTWAVWLGALAAYAGDEGGGAAAADGADLDGADLDGARAAP AEPCAPAAVRAGRLPAPLTVLWVTPMRALAADTARALQAAVSGLGVPWTVGLRTGDTPSAERSRQNRRLPSALVTTPESL SLLLTRADARETLARLRLVVVDEWHELLGNKRGTQTQLALARLAGWRPALQVWGLSATLGNLALAHDALLHAVRTPRVMV RGAQPKPLVVDTLIPETIERFPWAGHLGMRQVGAVADQIDAARSSLVFTNTRSQAEGWYQALLERRPDWAGLIALHHGSL DQSVRDWVELGLKNGKLKAVVCTSSLDLGVDFLPVERVFQIGSPKGVARLMQRAGRSGHAPGRTSRVTIVPTHALELVEA AAARWAIGAGRIEGREMPLKPLDVLVQHLVTVAIGGGFRPRALYDEVRTAYAYRDLAQAEFDWALAFVERGGASLSAYPD YHRVAADADGVYRVPREDLARRHRNNVGTIVANASINVAWLTGGRIGTIEEAFVSRLKPGDVFTFAGRALELVRVRDMTA YVRRAARSRGALAQWAGSRMPLSSELADAVLVMLARARDGAADGEPELRAVAPLLALQARWSALPGPGVLVVECLRTREG HHLFCYPFAGRMAHVGLGALIAWRVAREQPSTFSISVNDYGFELLSAQPFDWPALIDGGLFSPDRLEQDMLASLNASELA ARRFREIARVSGLVFQGHPGQQKSARQLQASSSLFYEVFRQHDRENLLLAQAEREVMLEELEARRIRDALSRMRESRLVL TQPARPTPFAFPLIVARLREKVSTEQLADRVERMLAALENTARREAAHD
Specific function: Unknown
COG id: COG1201
COG function: function code R; Lhr-like helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787942, Length=903, Percent_Identity=27.4640088593577, Blast_Score=199, Evalue=5e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR014001 - InterPro: IPR013701 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR017170 [H]
Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]
EC number: 3.6.1.-
Molecular weight: Translated: 100823; Mature: 100692
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGARGTGERHGREHDGAAAGGDPAASRDAADAADAQRRRPRGRRMPRTRAAQAKLDAAA CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH QAFRPAPFAFDAAAARRPIGPRIAAWLAAQDRQPFAFQEEVWREIARGASGLLHATTGAG HHCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCC KTWAVWLGALAAYAGDEGGGAAAADGADLDGADLDGARAAPAEPCAPAAVRAGRLPAPLT CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEE VLWVTPMRALAADTARALQAAVSGLGVPWTVGLRTGDTPSAERSRQNRRLPSALVTTPES EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCHHHHCCCHH LSLLLTRADARETLARLRLVVVDEWHELLGNKRGTQTQLALARLAGWRPALQVWGLSATL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCHHHHH GNLALAHDALLHAVRTPRVMVRGAQPKPLVVDTLIPETIERFPWAGHLGMRQVGAVADQI HHHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHH DAARSSLVFTNTRSQAEGWYQALLERRPDWAGLIALHHGSLDQSVRDWVELGLKNGKLKA HHHHHCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEE VVCTSSLDLGVDFLPVERVFQIGSPKGVARLMQRAGRSGHAPGRTSRVTIVPTHALELVE EEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHH AAAARWAIGAGRIEGREMPLKPLDVLVQHLVTVAIGGGFRPRALYDEVRTAYAYRDLAQA HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH EFDWALAFVERGGASLSAYPDYHRVAADADGVYRVPREDLARRHRNNVGTIVANASINVA HHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEECCHHHHHHHHCCCCEEEEEECEEEEE WLTGGRIGTIEEAFVSRLKPGDVFTFAGRALELVRVRDMTAYVRRAARSRGALAQWAGSR EEECCCCCCHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC MPLSSELADAVLVMLARARDGAADGEPELRAVAPLLALQARWSALPGPGVLVVECLRTRE CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC GHHLFCYPFAGRMAHVGLGALIAWRVAREQPSTFSISVNDYGFELLSAQPFDWPALIDGG CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCCCHHHHCCC LFSPDRLEQDMLASLNASELAARRFREIARVSGLVFQGHPGQQKSARQLQASSSLFYEVF CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHH RQHDRENLLLAQAEREVMLEELEARRIRDALSRMRESRLVLTQPARPTPFAFPLIVARLR HHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH EKVSTEQLADRVERMLAALENTARREAAHD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SGARGTGERHGREHDGAAAGGDPAASRDAADAADAQRRRPRGRRMPRTRAAQAKLDAAA CCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH QAFRPAPFAFDAAAARRPIGPRIAAWLAAQDRQPFAFQEEVWREIARGASGLLHATTGAG HHCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCC KTWAVWLGALAAYAGDEGGGAAAADGADLDGADLDGARAAPAEPCAPAAVRAGRLPAPLT CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEE VLWVTPMRALAADTARALQAAVSGLGVPWTVGLRTGDTPSAERSRQNRRLPSALVTTPES EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCHHHHCCCHH LSLLLTRADARETLARLRLVVVDEWHELLGNKRGTQTQLALARLAGWRPALQVWGLSATL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCHHHHH GNLALAHDALLHAVRTPRVMVRGAQPKPLVVDTLIPETIERFPWAGHLGMRQVGAVADQI HHHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHH DAARSSLVFTNTRSQAEGWYQALLERRPDWAGLIALHHGSLDQSVRDWVELGLKNGKLKA HHHHHCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEE VVCTSSLDLGVDFLPVERVFQIGSPKGVARLMQRAGRSGHAPGRTSRVTIVPTHALELVE EEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHH AAAARWAIGAGRIEGREMPLKPLDVLVQHLVTVAIGGGFRPRALYDEVRTAYAYRDLAQA HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH EFDWALAFVERGGASLSAYPDYHRVAADADGVYRVPREDLARRHRNNVGTIVANASINVA HHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEECCHHHHHHHHCCCCEEEEEECEEEEE WLTGGRIGTIEEAFVSRLKPGDVFTFAGRALELVRVRDMTAYVRRAARSRGALAQWAGSR EEECCCCCCHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC MPLSSELADAVLVMLARARDGAADGEPELRAVAPLLALQARWSALPGPGVLVVECLRTRE CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC GHHLFCYPFAGRMAHVGLGALIAWRVAREQPSTFSISVNDYGFELLSAQPFDWPALIDGG CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCCCHHHHCCC LFSPDRLEQDMLASLNASELAARRFREIARVSGLVFQGHPGQQKSARQLQASSSLFYEVF CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHH RQHDRENLLLAQAEREVMLEELEARRIRDALSRMRESRLVLTQPARPTPFAFPLIVARLR HHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH EKVSTEQLADRVERMLAALENTARREAAHD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]