| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024081
Identifier: 238024081
GI number: 238024081
Start: 770646
End: 772337
Strand: Direct
Name: 238024081
Synonym: bglu_2g06420
Alternate gene names: NA
Gene position: 770646-772337 (Clockwise)
Preceding gene: 238024080
Following gene: 238024082
Centisome position: 27.26
GC content: 67.61
Gene sequence:
>1692_bases ATGATTGCCCATCGCAGCCCGATCAGCGGCATCGCCGCTCACCGCGACCAGTACGTGCTGACGGCCGGCTACGACAATCA GGTGATCCTGTGGGACGCGAAGACGCAACAGCCGCTGGCGCGCGCGATGCACGATCATCTCGCCAACCAGGGCGCGTTCT CGCCGAACGGCGACTACGTGGTGACTTCCTCGTCCGACTACACCGCGCGTCTCTGGACCGTGCCGAACCTGCGCCTGGTC GCGGTGTTCGCCGACCAGGAGGACGACGTCGAGATGAGCGTGTTCCATCCGTCCAAGCCGCTGGTGGCCACCGCTTCACG GGACCATCGCGTGCGCGTCTATGACTTCTCCGGCCGGCTGGTGCAGACCTTCGAGGGGCACACGGCCGACGTGATCTCGG TCGAGTGGATGAGCGATGCCGACGAGCTGGTCTCCTCGAGCGACGACGGCACCATCAAGCGCTGGTCACTTGCCACCGGC GGCCTGGTCGGCGACATCGACCTGAACGGCATCGAAACCGACACCATCGTGATCGCCCCGGACAGCCGCATCTTCGCCGG CAACGACGAAGGCGAGATCATCATGATCGACGGCGATCGGCGCACCACCCTCAAGGCGCACGACGCCGGCGTGAAGCGGC TGGTGCTGGACGGCCGGCGCGGCCTGCTGGTGTCGCTCTCCTACGACCGCACCATGCGGCTGTGGAAGGTCGGCGAGGGC GTGCCCGAGGCCAGCGGCAGCACGCAGTTGCCGCCCGAGGTATGGCCGCGTTCCTGCTCGTTCGAGGGCGACGACCACAT CGTGTTCTCGACCTTCCATTCCACCTACCGCCGCTACAACTGGAAGCTCTCGCGCTGGGACACCAGAGAGATCGCGCCGA CCCACGGTGCCAACGCGGCGATCGCGATCGACGGCAAGGTCTGGACCGTCGGCGATGCTGGCGTGGTGCGCGTGGACGGC GTGGAGCATGCGAACACGCACAGCCTCTGCAACTTCCTCACGGTGGCGGGCGACGTGGTGCTCACCGGCGGCCAGCTCGG CAAGGTGTTCGATGCGCGCAACGGGCGCGAGCTCTACCAGCATCGCTCGCCGCTCAACTGCGCGGCCAGCTTCGAGCACG AGGGCGTGACGCATGCGATCGTCGGCGCCTATACCGGCGAGGGCATCGTGCTGCGCATCGAGGGCGACAAGGTGCGCCAC GTGCGCGACCTGCCGCTGCATCCGAATGCGGTGAAGGGCGTGGCGCGCTCGGGCGACCTGCTGTTCTCGGTGGCGGCCGA TGCCTCGGCCACCTGGGTGCGCTGCTCGACGCTGGAGATCGTCGCCACGCTGCCCGATGCGCACGACAAGATCGCCAACG GCTGCGCCGGTCTCGGCGAGGGCTACTTCGCCTCGATCAGCCGCGATCTCAAGCTGCGGATCTGGTCGCCCGACCAGCAG GTCGAATCGATCGACACGCCGCATACGCATTCGATCAAGTGCGTGAGTGCGAGCGGCGATGGCCGTTACATCGCCACCGG CAGCTACTACGGGCGCGTGGCGATCTACGACCGCGTCGAGCGGCGCTGGAGCTTCGATGCGCGCGTGAGCACGGCGGGCG TGTCCTCGCTGAGCTTCGATCCGCTGTCGGGGCATTTCCTCGCCAGCTCCTACGACGGCCAGGTTTACCGCGTGCCGGCG ATCCCGCGCTGA
Upstream 100 bases:
>100_bases TGAAGTCGACCGGCGTGTTCGCCAACAGCGTCAACTTTGGTTATCTGCATGCGAAGGCGACCCAGCACCGGCATGCCATC AAGCTCAACGGAGAAATGCA
Downstream 100 bases:
>100_bases AGCCGGTCCGGCCGGCGGCTGCCGGCCGGACTTTCGTTCAAGCGCGCGACGGCTGACGCGCTGCGCGCGATTTGCCCATC CGATCCTGCAATCGACTGCT
Product: WD-repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 563; Mature: 563
Protein sequence:
>563_residues MIAHRSPISGIAAHRDQYVLTAGYDNQVILWDAKTQQPLARAMHDHLANQGAFSPNGDYVVTSSSDYTARLWTVPNLRLV AVFADQEDDVEMSVFHPSKPLVATASRDHRVRVYDFSGRLVQTFEGHTADVISVEWMSDADELVSSSDDGTIKRWSLATG GLVGDIDLNGIETDTIVIAPDSRIFAGNDEGEIIMIDGDRRTTLKAHDAGVKRLVLDGRRGLLVSLSYDRTMRLWKVGEG VPEASGSTQLPPEVWPRSCSFEGDDHIVFSTFHSTYRRYNWKLSRWDTREIAPTHGANAAIAIDGKVWTVGDAGVVRVDG VEHANTHSLCNFLTVAGDVVLTGGQLGKVFDARNGRELYQHRSPLNCAASFEHEGVTHAIVGAYTGEGIVLRIEGDKVRH VRDLPLHPNAVKGVARSGDLLFSVAADASATWVRCSTLEIVATLPDAHDKIANGCAGLGEGYFASISRDLKLRIWSPDQQ VESIDTPHTHSIKCVSASGDGRYIATGSYYGRVAIYDRVERRWSFDARVSTAGVSSLSFDPLSGHFLASSYDGQVYRVPA IPR
Sequences:
>Translated_563_residues MIAHRSPISGIAAHRDQYVLTAGYDNQVILWDAKTQQPLARAMHDHLANQGAFSPNGDYVVTSSSDYTARLWTVPNLRLV AVFADQEDDVEMSVFHPSKPLVATASRDHRVRVYDFSGRLVQTFEGHTADVISVEWMSDADELVSSSDDGTIKRWSLATG GLVGDIDLNGIETDTIVIAPDSRIFAGNDEGEIIMIDGDRRTTLKAHDAGVKRLVLDGRRGLLVSLSYDRTMRLWKVGEG VPEASGSTQLPPEVWPRSCSFEGDDHIVFSTFHSTYRRYNWKLSRWDTREIAPTHGANAAIAIDGKVWTVGDAGVVRVDG VEHANTHSLCNFLTVAGDVVLTGGQLGKVFDARNGRELYQHRSPLNCAASFEHEGVTHAIVGAYTGEGIVLRIEGDKVRH VRDLPLHPNAVKGVARSGDLLFSVAADASATWVRCSTLEIVATLPDAHDKIANGCAGLGEGYFASISRDLKLRIWSPDQQ VESIDTPHTHSIKCVSASGDGRYIATGSYYGRVAIYDRVERRWSFDARVSTAGVSSLSFDPLSGHFLASSYDGQVYRVPA IPR >Mature_563_residues MIAHRSPISGIAAHRDQYVLTAGYDNQVILWDAKTQQPLARAMHDHLANQGAFSPNGDYVVTSSSDYTARLWTVPNLRLV AVFADQEDDVEMSVFHPSKPLVATASRDHRVRVYDFSGRLVQTFEGHTADVISVEWMSDADELVSSSDDGTIKRWSLATG GLVGDIDLNGIETDTIVIAPDSRIFAGNDEGEIIMIDGDRRTTLKAHDAGVKRLVLDGRRGLLVSLSYDRTMRLWKVGEG VPEASGSTQLPPEVWPRSCSFEGDDHIVFSTFHSTYRRYNWKLSRWDTREIAPTHGANAAIAIDGKVWTVGDAGVVRVDG VEHANTHSLCNFLTVAGDVVLTGGQLGKVFDARNGRELYQHRSPLNCAASFEHEGVTHAIVGAYTGEGIVLRIEGDKVRH VRDLPLHPNAVKGVARSGDLLFSVAADASATWVRCSTLEIVATLPDAHDKIANGCAGLGEGYFASISRDLKLRIWSPDQQ VESIDTPHTHSIKCVSASGDGRYIATGSYYGRVAIYDRVERRWSFDARVSTAGVSSLSFDPLSGHFLASSYDGQVYRVPA IPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 13 WD repeats [H]
Homologues:
Organism=Homo sapiens, GI19913369, Length=240, Percent_Identity=29.1666666666667, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI21071067, Length=212, Percent_Identity=31.1320754716981, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI32189425, Length=243, Percent_Identity=27.5720164609054, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI26665869, Length=227, Percent_Identity=25.9911894273128, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI102470001, Length=235, Percent_Identity=25.531914893617, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI4505895, Length=272, Percent_Identity=23.8970588235294, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI239787760, Length=182, Percent_Identity=27.4725274725275, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI239787754, Length=182, Percent_Identity=27.4725274725275, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI239787764, Length=182, Percent_Identity=27.4725274725275, Blast_Score=73, Evalue=7e-13, Organism=Homo sapiens, GI83779014, Length=185, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=8e-13, Organism=Homo sapiens, GI4557741, Length=260, Percent_Identity=23.4615384615385, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI7657439, Length=135, Percent_Identity=31.1111111111111, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI16554629, Length=171, Percent_Identity=27.4853801169591, Blast_Score=70, Evalue=6e-12, Organism=Homo sapiens, GI16554627, Length=171, Percent_Identity=27.4853801169591, Blast_Score=70, Evalue=6e-12, Organism=Homo sapiens, GI23199987, Length=199, Percent_Identity=24.6231155778894, Blast_Score=70, Evalue=7e-12, Organism=Homo sapiens, GI4758032, Length=233, Percent_Identity=25.3218884120172, Blast_Score=70, Evalue=8e-12, Organism=Homo sapiens, GI48928050, Length=242, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=9e-11, Organism=Homo sapiens, GI20336270, Length=208, Percent_Identity=27.4038461538462, Blast_Score=66, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17505895, Length=221, Percent_Identity=25.7918552036199, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17554220, Length=262, Percent_Identity=26.7175572519084, Blast_Score=79, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17559120, Length=254, Percent_Identity=26.3779527559055, Blast_Score=77, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17540286, Length=233, Percent_Identity=27.4678111587983, Blast_Score=76, Evalue=5e-14, Organism=Caenorhabditis elegans, GI115533709, Length=224, Percent_Identity=29.4642857142857, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17555848, Length=245, Percent_Identity=23.265306122449, Blast_Score=72, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17510485, Length=236, Percent_Identity=23.3050847457627, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17535491, Length=246, Percent_Identity=25.2032520325203, Blast_Score=67, Evalue=3e-11, Organism=Caenorhabditis elegans, GI72001544, Length=196, Percent_Identity=22.9591836734694, Blast_Score=66, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6319675, Length=147, Percent_Identity=38.0952380952381, Blast_Score=91, Evalue=5e-19, Organism=Saccharomyces cerevisiae, GI6319916, Length=144, Percent_Identity=28.4722222222222, Blast_Score=71, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6321301, Length=245, Percent_Identity=27.3469387755102, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6320056, Length=242, Percent_Identity=25.6198347107438, Blast_Score=67, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6325106, Length=176, Percent_Identity=28.9772727272727, Blast_Score=63, Evalue=1e-10, Organism=Drosophila melanogaster, GI24663767, Length=241, Percent_Identity=25.7261410788382, Blast_Score=76, Evalue=8e-14, Organism=Drosophila melanogaster, GI18859793, Length=272, Percent_Identity=24.6323529411765, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI17136870, Length=190, Percent_Identity=30, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI24649265, Length=143, Percent_Identity=31.4685314685315, Blast_Score=73, Evalue=5e-13, Organism=Drosophila melanogaster, GI17864654, Length=171, Percent_Identity=28.6549707602339, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI17864464, Length=205, Percent_Identity=26.3414634146341, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI17137608, Length=239, Percent_Identity=22.5941422594142, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24655452, Length=239, Percent_Identity=22.5941422594142, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI161078943, Length=158, Percent_Identity=27.2151898734177, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI19922278, Length=150, Percent_Identity=28, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020472 - InterPro: IPR011600 - InterPro: IPR015943 - InterPro: IPR001680 - InterPro: IPR011046 - InterPro: IPR019782 - InterPro: IPR019775 - InterPro: IPR017986 - InterPro: IPR019781 [H]
Pfam domain/function: PF00656 Peptidase_C14; PF00400 WD40 [H]
EC number: NA
Molecular weight: Translated: 61557; Mature: 61557
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: PS00678 WD_REPEATS_1 ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAHRSPISGIAAHRDQYVLTAGYDNQVILWDAKTQQPLARAMHDHLANQGAFSPNGDYV CCCCCCCCCCHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEE VTSSSDYTARLWTVPNLRLVAVFADQEDDVEMSVFHPSKPLVATASRDHRVRVYDFSGRL EECCCCCEEEEEECCCEEEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCE VQTFEGHTADVISVEWMSDADELVSSSDDGTIKRWSLATGGLVGDIDLNGIETDTIVIAP EEEECCCCEEEEEEEECCCHHHHHCCCCCCCEEEEEEECCCEEEEEECCCCCCCEEEECC DSRIFAGNDEGEIIMIDGDRRTTLKAHDAGVKRLVLDGRRGLLVSLSYDRTMRLWKVGEG CCEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCEEEEEECCCEEEEEECCCC VPEASGSTQLPPEVWPRSCSFEGDDHIVFSTFHSTYRRYNWKLSRWDTREIAPTHGANAA CCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEHHHHHHHCCEEEECCCCCCCCCCCCCCEE IAIDGKVWTVGDAGVVRVDGVEHANTHSLCNFLTVAGDVVLTGGQLGKVFDARNGRELYQ EEECCEEEEECCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEECCCCHHHHH HRSPLNCAASFEHEGVTHAIVGAYTGEGIVLRIEGDKVRHVRDLPLHPNAVKGVARSGDL CCCCCCEEECCCCCCCEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHHCCCCCE LFSVAADASATWVRCSTLEIVATLPDAHDKIANGCAGLGEGYFASISRDLKLRIWSPDQQ EEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCHH VESIDTPHTHSIKCVSASGDGRYIATGSYYGRVAIYDRVERRWSFDARVSTAGVSSLSFD HHHCCCCCCCEEEEEEECCCCCEEEECCCCEEEEEEEHHHHHCCCCCEEEECCCCCCCCC PLSGHFLASSYDGQVYRVPAIPR CCCCEEEEECCCCEEEECCCCCC >Mature Secondary Structure MIAHRSPISGIAAHRDQYVLTAGYDNQVILWDAKTQQPLARAMHDHLANQGAFSPNGDYV CCCCCCCCCCHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEE VTSSSDYTARLWTVPNLRLVAVFADQEDDVEMSVFHPSKPLVATASRDHRVRVYDFSGRL EECCCCCEEEEEECCCEEEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCE VQTFEGHTADVISVEWMSDADELVSSSDDGTIKRWSLATGGLVGDIDLNGIETDTIVIAP EEEECCCCEEEEEEEECCCHHHHHCCCCCCCEEEEEEECCCEEEEEECCCCCCCEEEECC DSRIFAGNDEGEIIMIDGDRRTTLKAHDAGVKRLVLDGRRGLLVSLSYDRTMRLWKVGEG CCEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCEEEEEECCCEEEEEECCCC VPEASGSTQLPPEVWPRSCSFEGDDHIVFSTFHSTYRRYNWKLSRWDTREIAPTHGANAA CCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEHHHHHHHCCEEEECCCCCCCCCCCCCCEE IAIDGKVWTVGDAGVVRVDGVEHANTHSLCNFLTVAGDVVLTGGQLGKVFDARNGRELYQ EEECCEEEEECCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEECCCCHHHHH HRSPLNCAASFEHEGVTHAIVGAYTGEGIVLRIEGDKVRHVRDLPLHPNAVKGVARSGDL CCCCCCEEECCCCCCCEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHHCCCCCE LFSVAADASATWVRCSTLEIVATLPDAHDKIANGCAGLGEGYFASISRDLKLRIWSPDQQ EEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCHH VESIDTPHTHSIKCVSASGDGRYIATGSYYGRVAIYDRVERRWSFDARVSTAGVSSLSFD HHHCCCCCCCEEEEEEECCCCCEEEECCCCEEEEEEEHHHHHCCCCCEEEECCCCCCCCC PLSGHFLASSYDGQVYRVPAIPR CCCCEEEEECCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]