Definition Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession NC_012721
Length 2,827,333

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The map label for this gene is 238024081

Identifier: 238024081

GI number: 238024081

Start: 770646

End: 772337

Strand: Direct

Name: 238024081

Synonym: bglu_2g06420

Alternate gene names: NA

Gene position: 770646-772337 (Clockwise)

Preceding gene: 238024080

Following gene: 238024082

Centisome position: 27.26

GC content: 67.61

Gene sequence:

>1692_bases
ATGATTGCCCATCGCAGCCCGATCAGCGGCATCGCCGCTCACCGCGACCAGTACGTGCTGACGGCCGGCTACGACAATCA
GGTGATCCTGTGGGACGCGAAGACGCAACAGCCGCTGGCGCGCGCGATGCACGATCATCTCGCCAACCAGGGCGCGTTCT
CGCCGAACGGCGACTACGTGGTGACTTCCTCGTCCGACTACACCGCGCGTCTCTGGACCGTGCCGAACCTGCGCCTGGTC
GCGGTGTTCGCCGACCAGGAGGACGACGTCGAGATGAGCGTGTTCCATCCGTCCAAGCCGCTGGTGGCCACCGCTTCACG
GGACCATCGCGTGCGCGTCTATGACTTCTCCGGCCGGCTGGTGCAGACCTTCGAGGGGCACACGGCCGACGTGATCTCGG
TCGAGTGGATGAGCGATGCCGACGAGCTGGTCTCCTCGAGCGACGACGGCACCATCAAGCGCTGGTCACTTGCCACCGGC
GGCCTGGTCGGCGACATCGACCTGAACGGCATCGAAACCGACACCATCGTGATCGCCCCGGACAGCCGCATCTTCGCCGG
CAACGACGAAGGCGAGATCATCATGATCGACGGCGATCGGCGCACCACCCTCAAGGCGCACGACGCCGGCGTGAAGCGGC
TGGTGCTGGACGGCCGGCGCGGCCTGCTGGTGTCGCTCTCCTACGACCGCACCATGCGGCTGTGGAAGGTCGGCGAGGGC
GTGCCCGAGGCCAGCGGCAGCACGCAGTTGCCGCCCGAGGTATGGCCGCGTTCCTGCTCGTTCGAGGGCGACGACCACAT
CGTGTTCTCGACCTTCCATTCCACCTACCGCCGCTACAACTGGAAGCTCTCGCGCTGGGACACCAGAGAGATCGCGCCGA
CCCACGGTGCCAACGCGGCGATCGCGATCGACGGCAAGGTCTGGACCGTCGGCGATGCTGGCGTGGTGCGCGTGGACGGC
GTGGAGCATGCGAACACGCACAGCCTCTGCAACTTCCTCACGGTGGCGGGCGACGTGGTGCTCACCGGCGGCCAGCTCGG
CAAGGTGTTCGATGCGCGCAACGGGCGCGAGCTCTACCAGCATCGCTCGCCGCTCAACTGCGCGGCCAGCTTCGAGCACG
AGGGCGTGACGCATGCGATCGTCGGCGCCTATACCGGCGAGGGCATCGTGCTGCGCATCGAGGGCGACAAGGTGCGCCAC
GTGCGCGACCTGCCGCTGCATCCGAATGCGGTGAAGGGCGTGGCGCGCTCGGGCGACCTGCTGTTCTCGGTGGCGGCCGA
TGCCTCGGCCACCTGGGTGCGCTGCTCGACGCTGGAGATCGTCGCCACGCTGCCCGATGCGCACGACAAGATCGCCAACG
GCTGCGCCGGTCTCGGCGAGGGCTACTTCGCCTCGATCAGCCGCGATCTCAAGCTGCGGATCTGGTCGCCCGACCAGCAG
GTCGAATCGATCGACACGCCGCATACGCATTCGATCAAGTGCGTGAGTGCGAGCGGCGATGGCCGTTACATCGCCACCGG
CAGCTACTACGGGCGCGTGGCGATCTACGACCGCGTCGAGCGGCGCTGGAGCTTCGATGCGCGCGTGAGCACGGCGGGCG
TGTCCTCGCTGAGCTTCGATCCGCTGTCGGGGCATTTCCTCGCCAGCTCCTACGACGGCCAGGTTTACCGCGTGCCGGCG
ATCCCGCGCTGA

Upstream 100 bases:

>100_bases
TGAAGTCGACCGGCGTGTTCGCCAACAGCGTCAACTTTGGTTATCTGCATGCGAAGGCGACCCAGCACCGGCATGCCATC
AAGCTCAACGGAGAAATGCA

Downstream 100 bases:

>100_bases
AGCCGGTCCGGCCGGCGGCTGCCGGCCGGACTTTCGTTCAAGCGCGCGACGGCTGACGCGCTGCGCGCGATTTGCCCATC
CGATCCTGCAATCGACTGCT

Product: WD-repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 563

Protein sequence:

>563_residues
MIAHRSPISGIAAHRDQYVLTAGYDNQVILWDAKTQQPLARAMHDHLANQGAFSPNGDYVVTSSSDYTARLWTVPNLRLV
AVFADQEDDVEMSVFHPSKPLVATASRDHRVRVYDFSGRLVQTFEGHTADVISVEWMSDADELVSSSDDGTIKRWSLATG
GLVGDIDLNGIETDTIVIAPDSRIFAGNDEGEIIMIDGDRRTTLKAHDAGVKRLVLDGRRGLLVSLSYDRTMRLWKVGEG
VPEASGSTQLPPEVWPRSCSFEGDDHIVFSTFHSTYRRYNWKLSRWDTREIAPTHGANAAIAIDGKVWTVGDAGVVRVDG
VEHANTHSLCNFLTVAGDVVLTGGQLGKVFDARNGRELYQHRSPLNCAASFEHEGVTHAIVGAYTGEGIVLRIEGDKVRH
VRDLPLHPNAVKGVARSGDLLFSVAADASATWVRCSTLEIVATLPDAHDKIANGCAGLGEGYFASISRDLKLRIWSPDQQ
VESIDTPHTHSIKCVSASGDGRYIATGSYYGRVAIYDRVERRWSFDARVSTAGVSSLSFDPLSGHFLASSYDGQVYRVPA
IPR

Sequences:

>Translated_563_residues
MIAHRSPISGIAAHRDQYVLTAGYDNQVILWDAKTQQPLARAMHDHLANQGAFSPNGDYVVTSSSDYTARLWTVPNLRLV
AVFADQEDDVEMSVFHPSKPLVATASRDHRVRVYDFSGRLVQTFEGHTADVISVEWMSDADELVSSSDDGTIKRWSLATG
GLVGDIDLNGIETDTIVIAPDSRIFAGNDEGEIIMIDGDRRTTLKAHDAGVKRLVLDGRRGLLVSLSYDRTMRLWKVGEG
VPEASGSTQLPPEVWPRSCSFEGDDHIVFSTFHSTYRRYNWKLSRWDTREIAPTHGANAAIAIDGKVWTVGDAGVVRVDG
VEHANTHSLCNFLTVAGDVVLTGGQLGKVFDARNGRELYQHRSPLNCAASFEHEGVTHAIVGAYTGEGIVLRIEGDKVRH
VRDLPLHPNAVKGVARSGDLLFSVAADASATWVRCSTLEIVATLPDAHDKIANGCAGLGEGYFASISRDLKLRIWSPDQQ
VESIDTPHTHSIKCVSASGDGRYIATGSYYGRVAIYDRVERRWSFDARVSTAGVSSLSFDPLSGHFLASSYDGQVYRVPA
IPR
>Mature_563_residues
MIAHRSPISGIAAHRDQYVLTAGYDNQVILWDAKTQQPLARAMHDHLANQGAFSPNGDYVVTSSSDYTARLWTVPNLRLV
AVFADQEDDVEMSVFHPSKPLVATASRDHRVRVYDFSGRLVQTFEGHTADVISVEWMSDADELVSSSDDGTIKRWSLATG
GLVGDIDLNGIETDTIVIAPDSRIFAGNDEGEIIMIDGDRRTTLKAHDAGVKRLVLDGRRGLLVSLSYDRTMRLWKVGEG
VPEASGSTQLPPEVWPRSCSFEGDDHIVFSTFHSTYRRYNWKLSRWDTREIAPTHGANAAIAIDGKVWTVGDAGVVRVDG
VEHANTHSLCNFLTVAGDVVLTGGQLGKVFDARNGRELYQHRSPLNCAASFEHEGVTHAIVGAYTGEGIVLRIEGDKVRH
VRDLPLHPNAVKGVARSGDLLFSVAADASATWVRCSTLEIVATLPDAHDKIANGCAGLGEGYFASISRDLKLRIWSPDQQ
VESIDTPHTHSIKCVSASGDGRYIATGSYYGRVAIYDRVERRWSFDARVSTAGVSSLSFDPLSGHFLASSYDGQVYRVPA
IPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 13 WD repeats [H]

Homologues:

Organism=Homo sapiens, GI19913369, Length=240, Percent_Identity=29.1666666666667, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI21071067, Length=212, Percent_Identity=31.1320754716981, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI32189425, Length=243, Percent_Identity=27.5720164609054, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI26665869, Length=227, Percent_Identity=25.9911894273128, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI102470001, Length=235, Percent_Identity=25.531914893617, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI4505895, Length=272, Percent_Identity=23.8970588235294, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI239787760, Length=182, Percent_Identity=27.4725274725275, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI239787754, Length=182, Percent_Identity=27.4725274725275, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI239787764, Length=182, Percent_Identity=27.4725274725275, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI83779014, Length=185, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=8e-13,
Organism=Homo sapiens, GI4557741, Length=260, Percent_Identity=23.4615384615385, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI7657439, Length=135, Percent_Identity=31.1111111111111, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI16554629, Length=171, Percent_Identity=27.4853801169591, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI16554627, Length=171, Percent_Identity=27.4853801169591, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI23199987, Length=199, Percent_Identity=24.6231155778894, Blast_Score=70, Evalue=7e-12,
Organism=Homo sapiens, GI4758032, Length=233, Percent_Identity=25.3218884120172, Blast_Score=70, Evalue=8e-12,
Organism=Homo sapiens, GI48928050, Length=242, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=9e-11,
Organism=Homo sapiens, GI20336270, Length=208, Percent_Identity=27.4038461538462, Blast_Score=66, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17505895, Length=221, Percent_Identity=25.7918552036199, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17554220, Length=262, Percent_Identity=26.7175572519084, Blast_Score=79, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17559120, Length=254, Percent_Identity=26.3779527559055, Blast_Score=77, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17540286, Length=233, Percent_Identity=27.4678111587983, Blast_Score=76, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI115533709, Length=224, Percent_Identity=29.4642857142857, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555848, Length=245, Percent_Identity=23.265306122449, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17510485, Length=236, Percent_Identity=23.3050847457627, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17535491, Length=246, Percent_Identity=25.2032520325203, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI72001544, Length=196, Percent_Identity=22.9591836734694, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6319675, Length=147, Percent_Identity=38.0952380952381, Blast_Score=91, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6319916, Length=144, Percent_Identity=28.4722222222222, Blast_Score=71, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321301, Length=245, Percent_Identity=27.3469387755102, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320056, Length=242, Percent_Identity=25.6198347107438, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6325106, Length=176, Percent_Identity=28.9772727272727, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24663767, Length=241, Percent_Identity=25.7261410788382, Blast_Score=76, Evalue=8e-14,
Organism=Drosophila melanogaster, GI18859793, Length=272, Percent_Identity=24.6323529411765, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17136870, Length=190, Percent_Identity=30, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24649265, Length=143, Percent_Identity=31.4685314685315, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI17864654, Length=171, Percent_Identity=28.6549707602339, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17864464, Length=205, Percent_Identity=26.3414634146341, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17137608, Length=239, Percent_Identity=22.5941422594142, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24655452, Length=239, Percent_Identity=22.5941422594142, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161078943, Length=158, Percent_Identity=27.2151898734177, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19922278, Length=150, Percent_Identity=28, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020472
- InterPro:   IPR011600
- InterPro:   IPR015943
- InterPro:   IPR001680
- InterPro:   IPR011046
- InterPro:   IPR019782
- InterPro:   IPR019775
- InterPro:   IPR017986
- InterPro:   IPR019781 [H]

Pfam domain/function: PF00656 Peptidase_C14; PF00400 WD40 [H]

EC number: NA

Molecular weight: Translated: 61557; Mature: 61557

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS00678 WD_REPEATS_1 ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAHRSPISGIAAHRDQYVLTAGYDNQVILWDAKTQQPLARAMHDHLANQGAFSPNGDYV
CCCCCCCCCCHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEE
VTSSSDYTARLWTVPNLRLVAVFADQEDDVEMSVFHPSKPLVATASRDHRVRVYDFSGRL
EECCCCCEEEEEECCCEEEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCE
VQTFEGHTADVISVEWMSDADELVSSSDDGTIKRWSLATGGLVGDIDLNGIETDTIVIAP
EEEECCCCEEEEEEEECCCHHHHHCCCCCCCEEEEEEECCCEEEEEECCCCCCCEEEECC
DSRIFAGNDEGEIIMIDGDRRTTLKAHDAGVKRLVLDGRRGLLVSLSYDRTMRLWKVGEG
CCEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCEEEEEECCCEEEEEECCCC
VPEASGSTQLPPEVWPRSCSFEGDDHIVFSTFHSTYRRYNWKLSRWDTREIAPTHGANAA
CCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEHHHHHHHCCEEEECCCCCCCCCCCCCCEE
IAIDGKVWTVGDAGVVRVDGVEHANTHSLCNFLTVAGDVVLTGGQLGKVFDARNGRELYQ
EEECCEEEEECCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEECCCCHHHHH
HRSPLNCAASFEHEGVTHAIVGAYTGEGIVLRIEGDKVRHVRDLPLHPNAVKGVARSGDL
CCCCCCEEECCCCCCCEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHHCCCCCE
LFSVAADASATWVRCSTLEIVATLPDAHDKIANGCAGLGEGYFASISRDLKLRIWSPDQQ
EEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCHH
VESIDTPHTHSIKCVSASGDGRYIATGSYYGRVAIYDRVERRWSFDARVSTAGVSSLSFD
HHHCCCCCCCEEEEEEECCCCCEEEECCCCEEEEEEEHHHHHCCCCCEEEECCCCCCCCC
PLSGHFLASSYDGQVYRVPAIPR
CCCCEEEEECCCCEEEECCCCCC
>Mature Secondary Structure
MIAHRSPISGIAAHRDQYVLTAGYDNQVILWDAKTQQPLARAMHDHLANQGAFSPNGDYV
CCCCCCCCCCHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEE
VTSSSDYTARLWTVPNLRLVAVFADQEDDVEMSVFHPSKPLVATASRDHRVRVYDFSGRL
EECCCCCEEEEEECCCEEEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCE
VQTFEGHTADVISVEWMSDADELVSSSDDGTIKRWSLATGGLVGDIDLNGIETDTIVIAP
EEEECCCCEEEEEEEECCCHHHHHCCCCCCCEEEEEEECCCEEEEEECCCCCCCEEEECC
DSRIFAGNDEGEIIMIDGDRRTTLKAHDAGVKRLVLDGRRGLLVSLSYDRTMRLWKVGEG
CCEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCEEEEEECCCEEEEEECCCC
VPEASGSTQLPPEVWPRSCSFEGDDHIVFSTFHSTYRRYNWKLSRWDTREIAPTHGANAA
CCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEHHHHHHHCCEEEECCCCCCCCCCCCCCEE
IAIDGKVWTVGDAGVVRVDGVEHANTHSLCNFLTVAGDVVLTGGQLGKVFDARNGRELYQ
EEECCEEEEECCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEECCCCHHHHH
HRSPLNCAASFEHEGVTHAIVGAYTGEGIVLRIEGDKVRHVRDLPLHPNAVKGVARSGDL
CCCCCCEEECCCCCCCEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHHCCCCCE
LFSVAADASATWVRCSTLEIVATLPDAHDKIANGCAGLGEGYFASISRDLKLRIWSPDQQ
EEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCHH
VESIDTPHTHSIKCVSASGDGRYIATGSYYGRVAIYDRVERRWSFDARVSTAGVSSLSFD
HHHCCCCCCCEEEEEEECCCCCEEEECCCCEEEEEEEHHHHHCCCCCEEEECCCCCCCCC
PLSGHFLASSYDGQVYRVPAIPR
CCCCEEEEECCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]