| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is phoP [C]
Identifier: 238023974
GI number: 238023974
Start: 627019
End: 629889
Strand: Reverse
Name: phoP [C]
Synonym: bglu_2g05240
Alternate gene names: 238023974
Gene position: 629889-627019 (Counterclockwise)
Preceding gene: 238023976
Following gene: 238023962
Centisome position: 22.28
GC content: 74.02
Gene sequence:
>2871_bases ATGTCATCAACGCCGGACGCCACCCCGACCTCGGTTCCGCTGGGCCGCTTCGAGATCGATCTGGTCGGCCGCGAGCTGCG GGAGAACGGCAGCGCGGTACGGCTGGGCGCGCGCGCGTTCGCGATCCTGGAAATGCTGGCCGCGGCCGATGGCCGGCTGG TCACGAAGGACGCGCTGCTGGACGCGATCTGGCCCGACACGTTCGTGGAGGAAAACACGCTGCAGGTGCATCTGTCGGCG CTGCGCCGCGCGCTCGGCGACCAACGCGACTGCATCATGACGGTGCCGGGACGCGGCTACCGGCTGGTTCGGCGCGCCGC CGCCGAGCCGCCGCGCGGCGCGCAGCCTGCCGCGCGCCTGCCTCGGCACCCGGACGTGATCGGCCGCACCCACGCCGTCG CGGCCGTGCGCGAAGCGCTTGGCCAGACGCGCGTGCTCACGCTGACGGGCGCCGGCGGCATCGGCAAGACCACCTTGTCG ATGGCCGTGGCGAGCGCGATCGAGGCCGGTGTGCCCGGCAGCGTGCATCTGATCGAGCTGGCCTCGATGCAGGGCGCGGC CGAGATCGTCGCGGCCGTCGAGGCCGGCGTCGGCCTGCGGCTGCCGCACCCCGCCTCCGCAGGCGGCCCGCTGCCGGCGC CGGCCGGCACGCCGCGGCTGCTGCTGCTCGACAACGCCGAGCACATGATCGTCGAGGTCGCGCGCGTCGTGGAATGCCTG CTCGCCGCCGTGCCGGCACTGCGCATCCTGGTGACGAGCCGCGAGCCGCTGCGCATCGCCGCCGAGGCGGTGTTCGCCGT CGAGCCGCTCGACGTGCCGCAGCGCGACGCCGACGAGGCGGCCATCCTGCAGCGCTCCGCCGTGCAGCTGTTCCTCGCGC GCGTGCAGGCGATGCGCGGCGGCCTCCATGAAAAGCGCGGCAGCGCGGCCGAACTGCGGCTGATCGGCGAGATCTGCCGC CGCCTCGACGGCATTCCGCTCGCGATCGAGCTGGCCGCCGCGCGCGTCGTCAGCTTCGGCGTCGACGGCGTCCACCAGCG GCTGTCCGACCGGCTCTCGCTGCTGTCGGGCGGTTTTCGCACCGCGCTGCCGCGCCACCAGACGCTGCGCGCCGCGTTCG ACTGGAGCTTCGCGCTGCTCGATGGCGAGAGCCGCGCGCTGTTGCGGCGGCTCGCGCCGTTCGGCGGCACGTTCTCGCTG GAAGCGATGTGCGCCGTGGCCTGCGACCGCGAGCTGACGGTGCGCGCCGTGGTGGACGGGATCGGCGAACTGGTGGCGAA GTCGCTCGTCGGCGTGGAGTTCGACGGCCCGGTGGCACGCTACCGCCTGTCCGAGTCCACGCGCGCCTACGCGCTCGAAC AACTGCACGCGGCCGGCGAGGCGCAGGCGCTCGCCGCACGCCACGCGCGCTACCTCGCCTCGCTGTTCCGCGGCGACGCG GCCGCCTCCGGCTTCTCCGGCGTGGACGACGCCCCCGGCATGCGGCAGGCGCTGGCCGATGCGCGCGGCGCCGTCGATTG GGCCTTCTCGCCCGACGGCGACACGCAGCTCGGCGTCGAGCTGTCCGCCACGCTGGTGGTCTCGCTGCTGGAGAACGCGC AGATCGAGGAATGCGGCCGGCGCGCCGCACAGGCGCTGGCCGCGCTCGAGGCGCTGCCCGCCGGATCGATCGCGCCGATC GACGTGCTGCGCCTCAAGCTCGCGCTCGCCGCGGTGCTGCCGAACCTGACCGGCCCGATCCAGCGCGCCGAGGACCTGTG GCTCGAGGTTCATGCGCACGCGGAGCGCAGCGGCAACGACGCGTTGCTCGCGCGCGCGTTCTGGGGGCTCTGGAACGTCA CGCTCTCGGCCGGCAAGGTCCACGAGGCGCTGCATTACTCGCGCCGCTTCGAGCGCTTCGCGAGAGAGACGGGCTGCGTC GCGCACCAGGTGCTGGCGACCCAGCTCACGGCGGTGGCCGAGCATTGCCGAGGCGACCACGAGATCGCGCGCGGCAAGCT CGAGCAGGGGCTGCGCCACATGGCGGCCCATCCCGAGCATGCCGAGTCGGTCCGGCACTTCGCCGTGGACCCGCGCGCCA TCGCCTATTCGGGGCTCGCGCGCATCCACTGGCTGCGCGGCGATACCGACGAGGCCGCGAAGCTGACCAGCCTGGCGCTC GGCCTGATCCCGGCCGAGACCATGGAGCCGTGGTTCACGCACGTGCTCGGCGTCGTGGCGGTGCCGCTGGCGCTGATCTC CGGCGATCGCGCGCGCGCCGCGCACTACCTCTCGATCATGAAATCGCAGACCACGCTGCACCGGCTCACGCTGTGGCGCG AGTTCGGCGACTGCCTCGCCTGCATCCTCGCGATTCGCGAAGGCCGGCCCGACGCCGGCCTGCCCCAGCTCGAAAGCGCG CTCGACTCGCTGCAGGCGCGCGGCTTTCACCGCCTGACCATGCCGCTCGTGGTCGAATGCGCGCTGGCGCTCGTCGCCGC CGGCCGCATCGGCGATGCGCTCGCCCGGCTGCACGCGGCCCAGGCATCGTGCGAGAAGCACGGCGCGCTGTACTTCATGC CCGAACTGCTGCGCGCGCTCGGGCTGGCGGCCCAGGCGCAGGCCGCCGCGCTCGCGGCCGGCAGCCCGGAACAGCGGCGC GGCACCGCGCGCGCCCTGGCGTACTTCTCGGACGCGATCGCCATGGCGCGCTCGCAAGGAGCCCGCATGTGGGAACTGCG GGCCGCGCTCTGCCTCGCGCGCCTGCCCCAGTCACCCGAGGCGATGGCCGACGCGCGCGCCGCGCTGCATGCGCTCGCCC CGCATTTCGATCGCCGCAGCAGCGTGCCGGAGATTCGCGAGCTGCTTGCGGCGCTGCCCGCAGGAGCGTGA
Upstream 100 bases:
>100_bases AACGGCGAAGCGACAAACGGCTAAAATACCGGCGCCTCATCCGCCCGCGCGGCCTCTCCCGCCCGCGCCTCCGCCACCCC GCCCGTTCCCAATCCTGAGC
Downstream 100 bases:
>100_bases GCGCGCCCCGGACTCCGCCGCGCTCCGGCGCCGCCCGTGCGGAATCAATCGCGGCGCGTGTGCCAGTCCGGCAGCGGCGT CGCGCCGGGCATCCGCGCGC
Product: winged helix family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 956; Mature: 955
Protein sequence:
>956_residues MSSTPDATPTSVPLGRFEIDLVGRELRENGSAVRLGARAFAILEMLAAADGRLVTKDALLDAIWPDTFVEENTLQVHLSA LRRALGDQRDCIMTVPGRGYRLVRRAAAEPPRGAQPAARLPRHPDVIGRTHAVAAVREALGQTRVLTLTGAGGIGKTTLS MAVASAIEAGVPGSVHLIELASMQGAAEIVAAVEAGVGLRLPHPASAGGPLPAPAGTPRLLLLDNAEHMIVEVARVVECL LAAVPALRILVTSREPLRIAAEAVFAVEPLDVPQRDADEAAILQRSAVQLFLARVQAMRGGLHEKRGSAAELRLIGEICR RLDGIPLAIELAAARVVSFGVDGVHQRLSDRLSLLSGGFRTALPRHQTLRAAFDWSFALLDGESRALLRRLAPFGGTFSL EAMCAVACDRELTVRAVVDGIGELVAKSLVGVEFDGPVARYRLSESTRAYALEQLHAAGEAQALAARHARYLASLFRGDA AASGFSGVDDAPGMRQALADARGAVDWAFSPDGDTQLGVELSATLVVSLLENAQIEECGRRAAQALAALEALPAGSIAPI DVLRLKLALAAVLPNLTGPIQRAEDLWLEVHAHAERSGNDALLARAFWGLWNVTLSAGKVHEALHYSRRFERFARETGCV AHQVLATQLTAVAEHCRGDHEIARGKLEQGLRHMAAHPEHAESVRHFAVDPRAIAYSGLARIHWLRGDTDEAAKLTSLAL GLIPAETMEPWFTHVLGVVAVPLALISGDRARAAHYLSIMKSQTTLHRLTLWREFGDCLACILAIREGRPDAGLPQLESA LDSLQARGFHRLTMPLVVECALALVAAGRIGDALARLHAAQASCEKHGALYFMPELLRALGLAAQAQAAALAAGSPEQRR GTARALAYFSDAIAMARSQGARMWELRAALCLARLPQSPEAMADARAALHALAPHFDRRSSVPEIRELLAALPAGA
Sequences:
>Translated_956_residues MSSTPDATPTSVPLGRFEIDLVGRELRENGSAVRLGARAFAILEMLAAADGRLVTKDALLDAIWPDTFVEENTLQVHLSA LRRALGDQRDCIMTVPGRGYRLVRRAAAEPPRGAQPAARLPRHPDVIGRTHAVAAVREALGQTRVLTLTGAGGIGKTTLS MAVASAIEAGVPGSVHLIELASMQGAAEIVAAVEAGVGLRLPHPASAGGPLPAPAGTPRLLLLDNAEHMIVEVARVVECL LAAVPALRILVTSREPLRIAAEAVFAVEPLDVPQRDADEAAILQRSAVQLFLARVQAMRGGLHEKRGSAAELRLIGEICR RLDGIPLAIELAAARVVSFGVDGVHQRLSDRLSLLSGGFRTALPRHQTLRAAFDWSFALLDGESRALLRRLAPFGGTFSL EAMCAVACDRELTVRAVVDGIGELVAKSLVGVEFDGPVARYRLSESTRAYALEQLHAAGEAQALAARHARYLASLFRGDA AASGFSGVDDAPGMRQALADARGAVDWAFSPDGDTQLGVELSATLVVSLLENAQIEECGRRAAQALAALEALPAGSIAPI DVLRLKLALAAVLPNLTGPIQRAEDLWLEVHAHAERSGNDALLARAFWGLWNVTLSAGKVHEALHYSRRFERFARETGCV AHQVLATQLTAVAEHCRGDHEIARGKLEQGLRHMAAHPEHAESVRHFAVDPRAIAYSGLARIHWLRGDTDEAAKLTSLAL GLIPAETMEPWFTHVLGVVAVPLALISGDRARAAHYLSIMKSQTTLHRLTLWREFGDCLACILAIREGRPDAGLPQLESA LDSLQARGFHRLTMPLVVECALALVAAGRIGDALARLHAAQASCEKHGALYFMPELLRALGLAAQAQAAALAAGSPEQRR GTARALAYFSDAIAMARSQGARMWELRAALCLARLPQSPEAMADARAALHALAPHFDRRSSVPEIRELLAALPAGA >Mature_955_residues SSTPDATPTSVPLGRFEIDLVGRELRENGSAVRLGARAFAILEMLAAADGRLVTKDALLDAIWPDTFVEENTLQVHLSAL RRALGDQRDCIMTVPGRGYRLVRRAAAEPPRGAQPAARLPRHPDVIGRTHAVAAVREALGQTRVLTLTGAGGIGKTTLSM AVASAIEAGVPGSVHLIELASMQGAAEIVAAVEAGVGLRLPHPASAGGPLPAPAGTPRLLLLDNAEHMIVEVARVVECLL AAVPALRILVTSREPLRIAAEAVFAVEPLDVPQRDADEAAILQRSAVQLFLARVQAMRGGLHEKRGSAAELRLIGEICRR LDGIPLAIELAAARVVSFGVDGVHQRLSDRLSLLSGGFRTALPRHQTLRAAFDWSFALLDGESRALLRRLAPFGGTFSLE AMCAVACDRELTVRAVVDGIGELVAKSLVGVEFDGPVARYRLSESTRAYALEQLHAAGEAQALAARHARYLASLFRGDAA ASGFSGVDDAPGMRQALADARGAVDWAFSPDGDTQLGVELSATLVVSLLENAQIEECGRRAAQALAALEALPAGSIAPID VLRLKLALAAVLPNLTGPIQRAEDLWLEVHAHAERSGNDALLARAFWGLWNVTLSAGKVHEALHYSRRFERFARETGCVA HQVLATQLTAVAEHCRGDHEIARGKLEQGLRHMAAHPEHAESVRHFAVDPRAIAYSGLARIHWLRGDTDEAAKLTSLALG LIPAETMEPWFTHVLGVVAVPLALISGDRARAAHYLSIMKSQTTLHRLTLWREFGDCLACILAIREGRPDAGLPQLESAL DSLQARGFHRLTMPLVVECALALVAAGRIGDALARLHAAQASCEKHGALYFMPELLRALGLAAQAQAAALAAGSPEQRRG TARALAYFSDAIAMARSQGARMWELRAALCLARLPQSPEAMADARAALHALAPHFDRRSSVPEIRELLAALPAGA
Specific function: Member Of The Two-Component Regulatory System Phoq/Phop Involved In The Regulation Of Acid Phosphatase. [C]
COG id: COG3903
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000767 - InterPro: IPR016032 - InterPro: IPR011990 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE [H]
EC number: NA
Molecular weight: Translated: 101806; Mature: 101675
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTPDATPTSVPLGRFEIDLVGRELRENGSAVRLGARAFAILEMLAAADGRLVTKDALL CCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCEEEHHHHH DAIWPDTFVEENTLQVHLSALRRALGDQRDCIMTVPGRGYRLVRRAAAEPPRGAQPAARL HHHCCCHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCHHHC PRHPDVIGRTHAVAAVREALGQTRVLTLTGAGGIGKTTLSMAVASAIEAGVPGSVHLIEL CCCCCHHCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEE ASMQGAAEIVAAVEAGVGLRLPHPASAGGPLPAPAGTPRLLLLDNAEHMIVEVARVVECL HHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH LAAVPALRILVTSREPLRIAAEAVFAVEPLDVPQRDADEAAILQRSAVQLFLARVQAMRG HHHHHHHHHHHCCCCCHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC GLHEKRGSAAELRLIGEICRRLDGIPLAIELAAARVVSFGVDGVHQRLSDRLSLLSGGFR CCHHCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHH TALPRHQTLRAAFDWSFALLDGESRALLRRLAPFGGTFSLEAMCAVACDRELTVRAVVDG HCCCCHHHHHHHHCCEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHH IGELVAKSLVGVEFDGPVARYRLSESTRAYALEQLHAAGEAQALAARHARYLASLFRGDA HHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC AASGFSGVDDAPGMRQALADARGAVDWAFSPDGDTQLGVELSATLVVSLLENAQIEECGR CCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCEECHHHHHHHHHHHHHCCCHHHHHH RAAQALAALEALPAGSIAPIDVLRLKLALAAVLPNLTGPIQRAEDLWLEVHAHAERSGND HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCH ALLARAFWGLWNVTLSAGKVHEALHYSRRFERFARETGCVAHQVLATQLTAVAEHCRGDH HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH EIARGKLEQGLRHMAAHPEHAESVRHFAVDPRAIAYSGLARIHWLRGDTDEAAKLTSLAL HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHH GLIPAETMEPWFTHVLGVVAVPLALISGDRARAAHYLSIMKSQTTLHRLTLWREFGDCLA HHCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CILAIREGRPDAGLPQLESALDSLQARGFHRLTMPLVVECALALVAAGRIGDALARLHAA HHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QASCEKHGALYFMPELLRALGLAAQAQAAALAAGSPEQRRGTARALAYFSDAIAMARSQG HHHHHHCCCEEEHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC ARMWELRAALCLARLPQSPEAMADARAALHALAPHFDRRSSVPEIRELLAALPAGA CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure SSTPDATPTSVPLGRFEIDLVGRELRENGSAVRLGARAFAILEMLAAADGRLVTKDALL CCCCCCCCCCCCCCCEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCEEEHHHHH DAIWPDTFVEENTLQVHLSALRRALGDQRDCIMTVPGRGYRLVRRAAAEPPRGAQPAARL HHHCCCHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCHHHC PRHPDVIGRTHAVAAVREALGQTRVLTLTGAGGIGKTTLSMAVASAIEAGVPGSVHLIEL CCCCCHHCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEE ASMQGAAEIVAAVEAGVGLRLPHPASAGGPLPAPAGTPRLLLLDNAEHMIVEVARVVECL HHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH LAAVPALRILVTSREPLRIAAEAVFAVEPLDVPQRDADEAAILQRSAVQLFLARVQAMRG HHHHHHHHHHHCCCCCHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC GLHEKRGSAAELRLIGEICRRLDGIPLAIELAAARVVSFGVDGVHQRLSDRLSLLSGGFR CCHHCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHH TALPRHQTLRAAFDWSFALLDGESRALLRRLAPFGGTFSLEAMCAVACDRELTVRAVVDG HCCCCHHHHHHHHCCEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHH IGELVAKSLVGVEFDGPVARYRLSESTRAYALEQLHAAGEAQALAARHARYLASLFRGDA HHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC AASGFSGVDDAPGMRQALADARGAVDWAFSPDGDTQLGVELSATLVVSLLENAQIEECGR CCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCEECHHHHHHHHHHHHHCCCHHHHHH RAAQALAALEALPAGSIAPIDVLRLKLALAAVLPNLTGPIQRAEDLWLEVHAHAERSGND HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCH ALLARAFWGLWNVTLSAGKVHEALHYSRRFERFARETGCVAHQVLATQLTAVAEHCRGDH HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH EIARGKLEQGLRHMAAHPEHAESVRHFAVDPRAIAYSGLARIHWLRGDTDEAAKLTSLAL HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHH GLIPAETMEPWFTHVLGVVAVPLALISGDRARAAHYLSIMKSQTTLHRLTLWREFGDCLA HHCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CILAIREGRPDAGLPQLESALDSLQARGFHRLTMPLVVECALALVAAGRIGDALARLHAA HHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QASCEKHGALYFMPELLRALGLAAQAQAAALAAGSPEQRRGTARALAYFSDAIAMARSQG HHHHHHCCCEEEHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC ARMWELRAALCLARLPQSPEAMADARAALHALAPHFDRRSSVPEIRELLAALPAGA CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]