| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is nfdA [H]
Identifier: 238023966
GI number: 238023966
Start: 619891
End: 621768
Strand: Direct
Name: nfdA [H]
Synonym: bglu_2g05160
Alternate gene names: 238023966
Gene position: 619891-621768 (Clockwise)
Preceding gene: 238023965
Following gene: 238023967
Centisome position: 21.92
GC content: 70.23
Gene sequence:
>1878_bases ATGAGCACCCCCGAGCAACCGGCACGCATTGCCGATCTGGTGATCTACAACGGCAAGATCGCCACGCAGGACGAGCGCCG CTCGTTCGTCACCGCGCTGGCCTCGGCCGGCGGCAGGATCGTCGCGACCGGCAGCGACGCCGACGTGATGCAATGGGCGC GCGGCGACGCGCGCCGCATCGACCTGAACGGCCGCACCGTGATCCCGGGCCTCAACGATTCCCACCTGCACGTGATTCGC GGCGGCCTGAACTTCAACATGGAGCTGCGCTGGGACGGCGTGCCCTCGCTGCGCGACGCGCTCGAGATGCTGCGCGCGCA GGTGGCGCGCACGCCGGCGCCGCAATGGGTGCGCGTGGTGGGCGGCTGGAACGAATTCCAGTTCGTCGAGAAGCGCGGCC CGACGCTCGACGAGATCAACGCGATCGCGCCGGATACGCCGGTGTTCCTCCTGCACCTCTACGACAGCGCGCTGCTCAAC GCGGCGGCGCTGCGCGCGGTCGGTTACGACCGCGACACGCCGAATCCGCCGGGCGGCGAGATCCAGCGCGACCGGCGCGG CAACCCCACCGGCATGCTGATCGCGCGGCCGAACGCGGGCCTGCTCTACGCGACGCTCGCCAAGGGGCCGAAGCTCGCGC CCGACGACCAGATGAATTCGACGCGGCAGTTCATGCGCGAGCTGAACCGGCTCGGCGTGACGAGCGCGATCGACGCGGGC GGCGGCTACCAGGCCTACCCCGACGACTACGCCGTGATCATGGAGCTGGCCCGGCGCGACCAGCTGTCGATCCGGATCGC CTACAACCTGTTTACGCAGAACGCGAAGCGCGAGATCGAGGATTTCGCGAAATGGGTGAAGGCCACCCGCCCCGGCGACG GCGACGATTTCCTCAAGGTCAACGGCGCGGGCGAGATGCTGGTGTTCTCGGCGGCCGACTTCGAGGACTTTCTCGAACCG CGCCCCGAGCTGCCCGATGCAATGGAGCAGGAACTGGAGGCGGTGGTGCGCCTGCTGGTCGAGAATCGCTGGCCGTTCCG CCTGCACGCGACCTACGACGAATCGATTTCACGCTTCCTCGACGTGTTCGAGCGCGTCGACGCCGACACGCCGTTCGACG GCCTGCGCTGGTTCTTCGACCACTGCGAGACGATCTCGGCGCGCAACATCGACCGGATCGCGGCGCTCGGCGGCGGGATC GCCGTGCAGCACCGCATGGCCTACCAGGGCGAGTACTTCATCGCGCGCTACGGCGCCGAGGCCGCCGCGCAGACGCCGCC CGTGCGCAGGATGCTCGAGGCCGGCCTGCCGGTGGGCGCCGGCACCGACGCGACGCGCGTGGCCAGCTACAACCCGTTCG TCTCGCTGTACTGGCTGGTCTCGGGGCGCACCGTGGGCGGCACGCCGATCTACGCGGCGCGCGACCGGCTGGAACGCATG GAAGCGCTGCGCCGCTACACGGTGGGCAGCGCCTGGTTCTCGAACGACGAAACCAGCAAGGGCGCGCTCGTGCCGGGCCA CTACGCCGACTTCGCGGTGCTGACCGACGACTTCTTCACGATCGAGGAAGACGCGATCAAGCATCTGGAGTCGGTGCTGA CGGTGGTGAACGGCCGCGTGGTGTACGCCGACGGCGAGTTCGGCGCCTACGGGCCGCCCGCGCTGCCGGTCAGCCCGAGC TGGTCGCCGGTGGCGGAGTTCGGCGGCTACGCGCGCTATCGCCCGGTCGGCGCGCCCGAACGTGCCTGCGCGGACGGCTG CGCGAATCGGTGCGGCGTTCACCGGCACGCGCACGGGCTGGCCTGGGGCCGCAACGCACCGGCCGGCGACCCGAATGCGT TCTGGGGCGCGCTCGGTTGCAGCTGCTTCGCGTTCTGA
Upstream 100 bases:
>100_bases GCCGCGGCGGCGCCCCGACGGGCGCGCGCGGCGCGGCCACCGAATCCGGCGGCAGCGCGTCCGCCGCATGCGAATCCATC CAGCCTGAAGGAGGGCGACG
Downstream 100 bases:
>100_bases CGGGGCGCCGCGATGAAGTCCGACGCGCCGCGTGGCGCCCACGCTTCGCCCGCTGTCGCCTTGGGGGCGGGCCGCCTCGA TACCACCGCCGCGGCGCTGC
Product: Amidohydrolase 3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 625; Mature: 624
Protein sequence:
>625_residues MSTPEQPARIADLVIYNGKIATQDERRSFVTALASAGGRIVATGSDADVMQWARGDARRIDLNGRTVIPGLNDSHLHVIR GGLNFNMELRWDGVPSLRDALEMLRAQVARTPAPQWVRVVGGWNEFQFVEKRGPTLDEINAIAPDTPVFLLHLYDSALLN AAALRAVGYDRDTPNPPGGEIQRDRRGNPTGMLIARPNAGLLYATLAKGPKLAPDDQMNSTRQFMRELNRLGVTSAIDAG GGYQAYPDDYAVIMELARRDQLSIRIAYNLFTQNAKREIEDFAKWVKATRPGDGDDFLKVNGAGEMLVFSAADFEDFLEP RPELPDAMEQELEAVVRLLVENRWPFRLHATYDESISRFLDVFERVDADTPFDGLRWFFDHCETISARNIDRIAALGGGI AVQHRMAYQGEYFIARYGAEAAAQTPPVRRMLEAGLPVGAGTDATRVASYNPFVSLYWLVSGRTVGGTPIYAARDRLERM EALRRYTVGSAWFSNDETSKGALVPGHYADFAVLTDDFFTIEEDAIKHLESVLTVVNGRVVYADGEFGAYGPPALPVSPS WSPVAEFGGYARYRPVGAPERACADGCANRCGVHRHAHGLAWGRNAPAGDPNAFWGALGCSCFAF
Sequences:
>Translated_625_residues MSTPEQPARIADLVIYNGKIATQDERRSFVTALASAGGRIVATGSDADVMQWARGDARRIDLNGRTVIPGLNDSHLHVIR GGLNFNMELRWDGVPSLRDALEMLRAQVARTPAPQWVRVVGGWNEFQFVEKRGPTLDEINAIAPDTPVFLLHLYDSALLN AAALRAVGYDRDTPNPPGGEIQRDRRGNPTGMLIARPNAGLLYATLAKGPKLAPDDQMNSTRQFMRELNRLGVTSAIDAG GGYQAYPDDYAVIMELARRDQLSIRIAYNLFTQNAKREIEDFAKWVKATRPGDGDDFLKVNGAGEMLVFSAADFEDFLEP RPELPDAMEQELEAVVRLLVENRWPFRLHATYDESISRFLDVFERVDADTPFDGLRWFFDHCETISARNIDRIAALGGGI AVQHRMAYQGEYFIARYGAEAAAQTPPVRRMLEAGLPVGAGTDATRVASYNPFVSLYWLVSGRTVGGTPIYAARDRLERM EALRRYTVGSAWFSNDETSKGALVPGHYADFAVLTDDFFTIEEDAIKHLESVLTVVNGRVVYADGEFGAYGPPALPVSPS WSPVAEFGGYARYRPVGAPERACADGCANRCGVHRHAHGLAWGRNAPAGDPNAFWGALGCSCFAF >Mature_624_residues STPEQPARIADLVIYNGKIATQDERRSFVTALASAGGRIVATGSDADVMQWARGDARRIDLNGRTVIPGLNDSHLHVIRG GLNFNMELRWDGVPSLRDALEMLRAQVARTPAPQWVRVVGGWNEFQFVEKRGPTLDEINAIAPDTPVFLLHLYDSALLNA AALRAVGYDRDTPNPPGGEIQRDRRGNPTGMLIARPNAGLLYATLAKGPKLAPDDQMNSTRQFMRELNRLGVTSAIDAGG GYQAYPDDYAVIMELARRDQLSIRIAYNLFTQNAKREIEDFAKWVKATRPGDGDDFLKVNGAGEMLVFSAADFEDFLEPR PELPDAMEQELEAVVRLLVENRWPFRLHATYDESISRFLDVFERVDADTPFDGLRWFFDHCETISARNIDRIAALGGGIA VQHRMAYQGEYFIARYGAEAAAQTPPVRRMLEAGLPVGAGTDATRVASYNPFVSLYWLVSGRTVGGTPIYAARDRLERME ALRRYTVGSAWFSNDETSKGALVPGHYADFAVLTDDFFTIEEDAIKHLESVLTVVNGRVVYADGEFGAYGPPALPVSPSW SPVAEFGGYARYRPVGAPERACADGCANRCGVHRHAHGLAWGRNAPAGDPNAFWGALGCSCFAF
Specific function: Hydrolyzes N-substituted formamides, but not amides. N- benzylformamide is the preferred substrate, while N-butylformamide is hydrolyzed at a much lower rate. Has very low activity towards allylformamide, N-(2-cyclohex-1-enylethyl)formamide and N-(alpha-
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: =3.5.1.91 [H]
Molecular weight: Translated: 68795; Mature: 68664
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPEQPARIADLVIYNGKIATQDERRSFVTALASAGGRIVATGSDADVMQWARGDARRI CCCCCCCHHEEEEEEECCEECCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCEEE DLNGRTVIPGLNDSHLHVIRGGLNFNMELRWDGVPSLRDALEMLRAQVARTPAPQWVRVV ECCCCEECCCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEE GGWNEFQFVEKRGPTLDEINAIAPDTPVFLLHLYDSALLNAAALRAVGYDRDTPNPPGGE CCCCHHHHHHHCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCC IQRDRRGNPTGMLIARPNAGLLYATLAKGPKLAPDDQMNSTRQFMRELNRLGVTSAIDAG CCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCC GGYQAYPDDYAVIMELARRDQLSIRIAYNLFTQNAKREIEDFAKWVKATRPGDGDDFLKV CCCCCCCCHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE NGAGEMLVFSAADFEDFLEPRPELPDAMEQELEAVVRLLVENRWPFRLHATYDESISRFL CCCCCEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHH DVFERVDADTPFDGLRWFFDHCETISARNIDRIAALGGGIAVQHRMAYQGEYFIARYGAE HHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEHHHHCCCEEEEECCCC AAAQTPPVRRMLEAGLPVGAGTDATRVASYNPFVSLYWLVSGRTVGGTPIYAARDRLERM HHCCCCHHHHHHHCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH EALRRYTVGSAWFSNDETSKGALVPGHYADFAVLTDDFFTIEEDAIKHLESVLTVVNGRV HHHHHHHCCCCEECCCCCCCCCCCCCCCCCEEEEECCCEECCHHHHHHHHHHHHHHCCEE VYADGEFGAYGPPALPVSPSWSPVAEFGGYARYRPVGAPERACADGCANRCGVHRHAHGL EEECCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCCCHHHHHHHHHHHCCCCHHHCCC AWGRNAPAGDPNAFWGALGCSCFAF CCCCCCCCCCCCHHHHHHCCHHHCC >Mature Secondary Structure STPEQPARIADLVIYNGKIATQDERRSFVTALASAGGRIVATGSDADVMQWARGDARRI CCCCCCHHEEEEEEECCEECCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCEEE DLNGRTVIPGLNDSHLHVIRGGLNFNMELRWDGVPSLRDALEMLRAQVARTPAPQWVRVV ECCCCEECCCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEE GGWNEFQFVEKRGPTLDEINAIAPDTPVFLLHLYDSALLNAAALRAVGYDRDTPNPPGGE CCCCHHHHHHHCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCC IQRDRRGNPTGMLIARPNAGLLYATLAKGPKLAPDDQMNSTRQFMRELNRLGVTSAIDAG CCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCC GGYQAYPDDYAVIMELARRDQLSIRIAYNLFTQNAKREIEDFAKWVKATRPGDGDDFLKV CCCCCCCCHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE NGAGEMLVFSAADFEDFLEPRPELPDAMEQELEAVVRLLVENRWPFRLHATYDESISRFL CCCCCEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHH DVFERVDADTPFDGLRWFFDHCETISARNIDRIAALGGGIAVQHRMAYQGEYFIARYGAE HHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEHHHHCCCEEEEECCCC AAAQTPPVRRMLEAGLPVGAGTDATRVASYNPFVSLYWLVSGRTVGGTPIYAARDRLERM HHCCCCHHHHHHHCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH EALRRYTVGSAWFSNDETSKGALVPGHYADFAVLTDDFFTIEEDAIKHLESVLTVVNGRV HHHHHHHCCCCEECCCCCCCCCCCCCCCCCEEEEECCCEECCHHHHHHHHHHHHHHCCEE VYADGEFGAYGPPALPVSPSWSPVAEFGGYARYRPVGAPERACADGCANRCGVHRHAHGL EEECCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCCCHHHHHHHHHHHCCCCHHHCCC AWGRNAPAGDPNAFWGALGCSCFAF CCCCCCCCCCCCHHHHHHCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA