Click here to switch to the map view.

The map label for this gene is ygbK [C]

Identifier: 238023940

GI number: 238023940

Start: 584863

End: 586158

Strand: Reverse

Name: ygbK [C]

Synonym: bglu_2g04890

Alternate gene names: 238023940

Gene position: 586158-584863 (Counterclockwise)

Preceding gene: 238023941

Following gene: 238023939

Centisome position: 20.73

GC content: 74.07

Gene sequence:

>1296_bases
ATGACCGACTCCGCCACCCCCGCCCGTCCGCTGCTCGGCTGCATCGCCGACGATTTCACCGGCGCGACCGACCTCGCGAA
CATGCTCGTGAAGAGCGGCATGCGCACGATCCAGACCATCGGCGTGCCCGAACCCGGCGCGCGGCTCGACGCCGACGCGC
TCGTCGTCGCGCTGAAGTCGCGCACGATCCCGGCCGCCGACGCCGTGGCCCGGTCGCTCGCCGCGCTCGCCTGGCTGCGC
GGGCAGGGCTGCCGGCAGTTCTATTTCAAGTATTGCTCGACCTTCGATTCGACTGACGCCGGCAACATCGGCCCGGTGGC
CGACGCGCTCGCCCGCGCGCTCGGCGCCGACGATGCGCTGGTGATTGCCTGCCCCGCGTTTCCCGAGACGGGGCGCACGA
TCTATCGCGGCCACCTGTTCGTCGGCGACGCGCCGCTCGACGAATCGGGCATGGAGCAGCATCCGCTCACGCCGATGAGG
GACGCGAACCTGGTGCGCGTGCTGCAGCGGCAGACGCCGTCGAAGGTCGGCCTGGTGCGCTACGACACGATCGCGCGCGG
TGCCGGCGCGGTGCGCGAGGCGTTCGCGGCGCTGCGCGCCGACGGCGTGCGCTACGCGATCACCGATGCGCTGTCCGACG
CGGACCTGCACACGGTGGGCGAGGCCTGCAGCGATCACCTGCTCGTGACGGGCGGCTCGGGCCTCGCGCTCGGCCTGCCG
GCCAACTTCCGGCGCGCGGGCCTGCTGCGCGAGCGCGGCGACGCGGCGGCGCTGCCGCGCGTGGCGGGCGGCGCCGTGGT
GCTGGCCGGCAGCGCCTCGAAGGCGACCAACGCGCAGGTGGCCGAGTGGCGCGCGAGCCGTCCGGCGCTGCGCCTCGATC
CGCTCGCGATCTCGCGCGGCGAACCGGTGGTGGCCGACGCGCTCGGCTTCTTCGACGCGCAGCGGGGCGAGCCGGTGCTG
ATCTACGCCACCGCCGCGCCCGACGAGGTGAAGGCGGTGCAGCAGCAGCTCGGCGCCGAGGCCGCGGGCGCGCTCGTCGA
GCTGACGCTGGCCGAGATCGCGCGCGGGCTGCTCACGCGCGGCGTGCGCCGTTTCGTGGTGGCGGGCGGCGAAACCTCCG
GCGCGGTGGTGCAGGCGCTCGGCGTAAGGGCGCTGCAGATCGGCGCGCAGATCGACCCCGGCGTGCCCGCCACCGCCACG
CTCGACGGCCAGTTCGCGCTGGCGCTGAAGTCGGGCAATTTCGGCGCCGTCGATTTCTTCGCCAGGGCGCTGGCACGTCT
GGAGAACCTCGCATGA

Upstream 100 bases:

>100_bases
ACGGCGGCGAGGACGATTCCGCCGTGATCAAGACCTTCCCCGGCATCACGCTGCCACCGGCGCGCTGAAGCGCCGAACCG
CGCCACTCGTGCTCATCGTC

Downstream 100 bases:

>100_bases
GCACCGAACAGCAGCTGCGCGAAACCCTCTGCGCAGTGGGCGCGAGCCTGTTCGCGCGCGGCCACGCGGTAGGCACCGCC
GGCAACCTCAGCGCGCGGCT

Product: Hrp-dependent type III effector protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MTDSATPARPLLGCIADDFTGATDLANMLVKSGMRTIQTIGVPEPGARLDADALVVALKSRTIPAADAVARSLAALAWLR
GQGCRQFYFKYCSTFDSTDAGNIGPVADALARALGADDALVIACPAFPETGRTIYRGHLFVGDAPLDESGMEQHPLTPMR
DANLVRVLQRQTPSKVGLVRYDTIARGAGAVREAFAALRADGVRYAITDALSDADLHTVGEACSDHLLVTGGSGLALGLP
ANFRRAGLLRERGDAAALPRVAGGAVVLAGSASKATNAQVAEWRASRPALRLDPLAISRGEPVVADALGFFDAQRGEPVL
IYATAAPDEVKAVQQQLGAEAAGALVELTLAEIARGLLTRGVRRFVVAGGETSGAVVQALGVRALQIGAQIDPGVPATAT
LDGQFALALKSGNFGAVDFFARALARLENLA

Sequences:

>Translated_431_residues
MTDSATPARPLLGCIADDFTGATDLANMLVKSGMRTIQTIGVPEPGARLDADALVVALKSRTIPAADAVARSLAALAWLR
GQGCRQFYFKYCSTFDSTDAGNIGPVADALARALGADDALVIACPAFPETGRTIYRGHLFVGDAPLDESGMEQHPLTPMR
DANLVRVLQRQTPSKVGLVRYDTIARGAGAVREAFAALRADGVRYAITDALSDADLHTVGEACSDHLLVTGGSGLALGLP
ANFRRAGLLRERGDAAALPRVAGGAVVLAGSASKATNAQVAEWRASRPALRLDPLAISRGEPVVADALGFFDAQRGEPVL
IYATAAPDEVKAVQQQLGAEAAGALVELTLAEIARGLLTRGVRRFVVAGGETSGAVVQALGVRALQIGAQIDPGVPATAT
LDGQFALALKSGNFGAVDFFARALARLENLA
>Mature_430_residues
TDSATPARPLLGCIADDFTGATDLANMLVKSGMRTIQTIGVPEPGARLDADALVVALKSRTIPAADAVARSLAALAWLRG
QGCRQFYFKYCSTFDSTDAGNIGPVADALARALGADDALVIACPAFPETGRTIYRGHLFVGDAPLDESGMEQHPLTPMRD
ANLVRVLQRQTPSKVGLVRYDTIARGAGAVREAFAALRADGVRYAITDALSDADLHTVGEACSDHLLVTGGSGLALGLPA
NFRRAGLLRERGDAAALPRVAGGAVVLAGSASKATNAQVAEWRASRPALRLDPLAISRGEPVVADALGFFDAQRGEPVLI
YATAAPDEVKAVQQQLGAEAAGALVELTLAEIARGLLTRGVRRFVVAGGETSGAVVQALGVRALQIGAQIDPGVPATATL
DGQFALALKSGNFGAVDFFARALARLENLA

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=388, Percent_Identity=46.1340206185567, Blast_Score=317, Evalue=1e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 44612; Mature: 44481

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSATPARPLLGCIADDFTGATDLANMLVKSGMRTIQTIGVPEPGARLDADALVVALKS
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHEEEECC
RTIPAADAVARSLAALAWLRGQGCRQFYFKYCSTFDSTDAGNIGPVADALARALGADDAL
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEE
VIACPAFPETGRTIYRGHLFVGDAPLDESGMEQHPLTPMRDANLVRVLQRQTPSKVGLVR
EEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE
YDTIARGAGAVREAFAALRADGVRYAITDALSDADLHTVGEACSDHLLVTGGSGLALGLP
EHHHHHCHHHHHHHHHHHHHCCCEEEEHHHCCCCHHHHHHHHHCCCEEEECCCCEEECCC
ANFRRAGLLRERGDAAALPRVAGGAVVLAGSASKATNAQVAEWRASRPALRLDPLAISRG
CCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCCEEECCEEECCC
EPVVADALGFFDAQRGEPVLIYATAAPDEVKAVQQQLGAEAAGALVELTLAEIARGLLTR
CCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
GVRRFVVAGGETSGAVVQALGVRALQIGAQIDPGVPATATLDGQFALALKSGNFGAVDFF
HHHHEEEECCCCCCHHHHHHHHHHEEECCCCCCCCCCEEEECCEEEEEEECCCCCHHHHH
ARALARLENLA
HHHHHHHHHCC
>Mature Secondary Structure 
TDSATPARPLLGCIADDFTGATDLANMLVKSGMRTIQTIGVPEPGARLDADALVVALKS
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHEEEECC
RTIPAADAVARSLAALAWLRGQGCRQFYFKYCSTFDSTDAGNIGPVADALARALGADDAL
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEE
VIACPAFPETGRTIYRGHLFVGDAPLDESGMEQHPLTPMRDANLVRVLQRQTPSKVGLVR
EEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE
YDTIARGAGAVREAFAALRADGVRYAITDALSDADLHTVGEACSDHLLVTGGSGLALGLP
EHHHHHCHHHHHHHHHHHHHCCCEEEEHHHCCCCHHHHHHHHHCCCEEEECCCCEEECCC
ANFRRAGLLRERGDAAALPRVAGGAVVLAGSASKATNAQVAEWRASRPALRLDPLAISRG
CCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCCEEECCEEECCC
EPVVADALGFFDAQRGEPVLIYATAAPDEVKAVQQQLGAEAAGALVELTLAEIARGLLTR
CCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
GVRRFVVAGGETSGAVVQALGVRALQIGAQIDPGVPATATLDGQFALALKSGNFGAVDFF
HHHHEEEECCCCCCHHHHHHHHHHEEECCCCCCCCCCEEEECCEEEEEEECCCCCHHHHH
ARALARLENLA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]