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The map label for this gene is ycdC [C]

Identifier: 238023884

GI number: 238023884

Start: 506742

End: 507431

Strand: Reverse

Name: ycdC [C]

Synonym: bglu_2g04230

Alternate gene names: 238023884

Gene position: 507431-506742 (Counterclockwise)

Preceding gene: 238023890

Following gene: 238023881

Centisome position: 17.95

GC content: 64.93

Gene sequence:

>690_bases
ATGAAACAAGGTAGCAACGCCGATGCGCCCGACGGCGCGACGCCGGCCCGAGGCAGCCGCCGCGACGAATCACGCCGCAA
GTACGACCCGGAGCAGACCAAGCGCAACATCCTGGAGGTCGCGACCCAGGAGTTTTCCGCGATGGGCCTCGCGGGCGCGC
GCGTCGACGCGATCGCCGAGCGCACCAACACCACCAAGCGGATGCTCTATTACTACTTCGACAGCAAGGAAGGGCTGTAC
GAGGCGGTGCTGGAGAAGGTCTACGGCGACATCCGCACGCTCGAGCTCGAGCTCAACATCGGCGAGCTGACGCCCACCGA
GGGCATGCGCCGCCTCGTCGAATTCACCTTCGACTACCACGACAAGCATCGCGACTTCGTGCGCCTCGTCTCGATCGAGA
ACATCCACGGCGCGAAATACCTCGAACAGCTGAAGTCGTTCAAGAACCGCAACCTCAGCATCATCAAGACGATCGAGGAC
CTGCTCGTGCGCGGCGCCGAGGCCGGCGAATTCCGCACCGGCATCGACGCGTTCGACCTGCACCTGATGATCAGCTCGTT
CTGTTTCCACCGCGTGTCCAACCGCTACACGTTCGGTGCCGCGTTCGGCCGCGATCCGTCGGCGCCGCGGCTGCGCGTGC
GCCACCGGACCATGATCGCCGACAGCGTGCTCGGCTACATCGCGCGCTGA

Upstream 100 bases:

>100_bases
GCCGCGGCCGCCCGGCACGGCCGGCATGCTCCCAAAACGGCGCCCGGAGGCACCGGACCCACATGCTAGAATGCGCCGAT
CCAGCCGCCGACATGACCCC

Downstream 100 bases:

>100_bases
ACGGCACCGGGCGCGGGACCCCGTCCCGCACCCTCGGCTCAGCCCGGCGGCGGCGCCGCCAGCGCGATGCGCGCCTTCTC
CTCGGGGCTGCCCGCCACGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKQGSNADAPDGATPARGSRRDESRRKYDPEQTKRNILEVATQEFSAMGLAGARVDAIAERTNTTKRMLYYYFDSKEGLY
EAVLEKVYGDIRTLELELNIGELTPTEGMRRLVEFTFDYHDKHRDFVRLVSIENIHGAKYLEQLKSFKNRNLSIIKTIED
LLVRGAEAGEFRTGIDAFDLHLMISSFCFHRVSNRYTFGAAFGRDPSAPRLRVRHRTMIADSVLGYIAR

Sequences:

>Translated_229_residues
MKQGSNADAPDGATPARGSRRDESRRKYDPEQTKRNILEVATQEFSAMGLAGARVDAIAERTNTTKRMLYYYFDSKEGLY
EAVLEKVYGDIRTLELELNIGELTPTEGMRRLVEFTFDYHDKHRDFVRLVSIENIHGAKYLEQLKSFKNRNLSIIKTIED
LLVRGAEAGEFRTGIDAFDLHLMISSFCFHRVSNRYTFGAAFGRDPSAPRLRVRHRTMIADSVLGYIAR
>Mature_229_residues
MKQGSNADAPDGATPARGSRRDESRRKYDPEQTKRNILEVATQEFSAMGLAGARVDAIAERTNTTKRMLYYYFDSKEGLY
EAVLEKVYGDIRTLELELNIGELTPTEGMRRLVEFTFDYHDKHRDFVRLVSIENIHGAKYLEQLKSFKNRNLSIIKTIED
LLVRGAEAGEFRTGIDAFDLHLMISSFCFHRVSNRYTFGAAFGRDPSAPRLRVRHRTMIADSVLGYIAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26209; Mature: 26209

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQGSNADAPDGATPARGSRRDESRRKYDPEQTKRNILEVATQEFSAMGLAGARVDAIAE
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RTNTTKRMLYYYFDSKEGLYEAVLEKVYGDIRTLELELNIGELTPTEGMRRLVEFTFDYH
HCCCHHEEEEEEECCCCCHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
DKHRDFVRLVSIENIHGAKYLEQLKSFKNRNLSIIKTIEDLLVRGAEAGEFRTGIDAFDL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHCCCHHHHH
HLMISSFCFHRVSNRYTFGAAFGRDPSAPRLRVRHRTMIADSVLGYIAR
HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQGSNADAPDGATPARGSRRDESRRKYDPEQTKRNILEVATQEFSAMGLAGARVDAIAE
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RTNTTKRMLYYYFDSKEGLYEAVLEKVYGDIRTLELELNIGELTPTEGMRRLVEFTFDYH
HCCCHHEEEEEEECCCCCHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
DKHRDFVRLVSIENIHGAKYLEQLKSFKNRNLSIIKTIEDLLVRGAEAGEFRTGIDAFDL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHCCCHHHHH
HLMISSFCFHRVSNRYTFGAAFGRDPSAPRLRVRHRTMIADSVLGYIAR
HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA