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The map label for this gene is yhjC [H]

Identifier: 238023814

GI number: 238023814

Start: 414633

End: 415643

Strand: Reverse

Name: yhjC [H]

Synonym: bglu_2g03520

Alternate gene names: 238023814

Gene position: 415643-414633 (Counterclockwise)

Preceding gene: 238023819

Following gene: 238023813

Centisome position: 14.7

GC content: 67.26

Gene sequence:

>1011_bases
ATGGACCGTCTTCAAGCGATGCAGGTATTCACGCGCGTCGTCGATACGAACAGCTTCACGAAGGCCGCGGAGACGCTGGG
CCTGCCGCGCGCGTCCGTGACGACGATCATCCAGAACCTCGAGGCCTTCCTGGGCGTGCGGCTGATGCATCGGACCACGC
GGCGGCTGTCGCTGACGCCGGACGGCGCCGCGTATTACGAGCGCTGCGTGCGGATCCTGGCCGAGGTCGAGGAGACCGAG
GCCAGCTTCCAGATCAACAATCGCAAGCCGCATGGCAAGCTGCGGGTGGACATGCCCGGCTCGCTCGGGCGGCTGGTGGT
GATCCCGGCGCTGAACGAATTCCGCGAGCGCTTCCCCGACATCGACCTGCAGCTCGGACTGTCGGACCGCCCGGTCGATC
TGCTGCAGGAGGGCGTGGACTGCGTGATCCGGATCGGCGTGCTGCAGGATTCGTCGCTCGTCGCGCGCCGGGTCGGGCTG
TTCGAGTGCGTCACGGTCGCCTCGCCCGCGTATCTGGCGCGCTGCGGCGAGCCGCACAGCATCGACGACCTGGCCGAGCA
TCGCGCCGTGAACTATTTCTCGAGCCGCACCGGGCGCACCATCGACTGGGCGTTCCTGATCGAGGGCAAGGAAGTGGAGG
TCAAGATGGAGGGCGTGGTGTCGGTCAACGACGCCGACGCCTACGTGACCTGCGGCATCGAGGGCTTCGGCCTGATCCAG
CCGCCGCTTTTCATGGTGCTGCCGCAGTTGCGCTCGGGCGTGCTCAAGGAAGTGCTGACGGACCACAAGCCGCTGCCGAT
GCCGATTTCGGTGGTCTATCCGCACAGCCGGCATCTGTCGCCGAAGGTGCGCGTGTTCGTGGACTGGATCGCCGAGGTGT
TCGACCGCTGCCCGCTGCTGAACGGCTCGGGCCGCCCGCCGCTCGACACGGTCTGCAGCAAGCGCACGTTCGAGCAGGCC
GAGAGAGCGCCGGCGCTCGATACGCCGGTGATCAACGAGTGGGTGGCCTAA

Upstream 100 bases:

>100_bases
CGGCAACACAATTCAGGGGCTTTGAACAATCGACGCACGGGCGTGCGAAACACGGCGTCCGGCCGACTGATTGGGCCGAT
CAAACCCGGAGGTAAGCAGC

Downstream 100 bases:

>100_bases
GCCGCCGCAGCCGAGCGCGCCCGATTCCGGCGTGACGCCGGCGGCCGGCCCGGCCCGGCGGCGCGAATCGGCATCTCGTG
CCACGCACGCGCATCGAGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYYERCVRILAEVEETE
ASFQINNRKPHGKLRVDMPGSLGRLVVIPALNEFRERFPDIDLQLGLSDRPVDLLQEGVDCVIRIGVLQDSSLVARRVGL
FECVTVASPAYLARCGEPHSIDDLAEHRAVNYFSSRTGRTIDWAFLIEGKEVEVKMEGVVSVNDADAYVTCGIEGFGLIQ
PPLFMVLPQLRSGVLKEVLTDHKPLPMPISVVYPHSRHLSPKVRVFVDWIAEVFDRCPLLNGSGRPPLDTVCSKRTFEQA
ERAPALDTPVINEWVA

Sequences:

>Translated_336_residues
MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYYERCVRILAEVEETE
ASFQINNRKPHGKLRVDMPGSLGRLVVIPALNEFRERFPDIDLQLGLSDRPVDLLQEGVDCVIRIGVLQDSSLVARRVGL
FECVTVASPAYLARCGEPHSIDDLAEHRAVNYFSSRTGRTIDWAFLIEGKEVEVKMEGVVSVNDADAYVTCGIEGFGLIQ
PPLFMVLPQLRSGVLKEVLTDHKPLPMPISVVYPHSRHLSPKVRVFVDWIAEVFDRCPLLNGSGRPPLDTVCSKRTFEQA
ERAPALDTPVINEWVA
>Mature_336_residues
MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYYERCVRILAEVEETE
ASFQINNRKPHGKLRVDMPGSLGRLVVIPALNEFRERFPDIDLQLGLSDRPVDLLQEGVDCVIRIGVLQDSSLVARRVGL
FECVTVASPAYLARCGEPHSIDDLAEHRAVNYFSSRTGRTIDWAFLIEGKEVEVKMEGVVSVNDADAYVTCGIEGFGLIQ
PPLFMVLPQLRSGVLKEVLTDHKPLPMPISVVYPHSRHLSPKVRVFVDWIAEVFDRCPLLNGSGRPPLDTVCSKRTFEQA
ERAPALDTPVINEWVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=40.1360544217687, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=33.445945945946, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1789639, Length=311, Percent_Identity=31.5112540192926, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=28.9752650176678, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=28.8732394366197, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=30.4195804195804, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=31.2714776632302, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1789173, Length=197, Percent_Identity=31.4720812182741, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=24.3150684931507, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788706, Length=293, Percent_Identity=23.5494880546075, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=22.1453287197232, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=173, Percent_Identity=29.4797687861272, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082132, Length=292, Percent_Identity=24.6575342465753, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37490; Mature: 37490

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
DGAAYYERCVRILAEVEETEASFQINNRKPHGKLRVDMPGSLGRLVVIPALNEFRERFPD
CCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCEEEEECHHHHHHHCCC
IDLQLGLSDRPVDLLQEGVDCVIRIGVLQDSSLVARRVGLFECVTVASPAYLARCGEPHS
CEEEECCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
IDDLAEHRAVNYFSSRTGRTIDWAFLIEGKEVEVKMEGVVSVNDADAYVTCGIEGFGLIQ
HHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECEEEECCCCEEEEECCCCCCCCC
PPLFMVLPQLRSGVLKEVLTDHKPLPMPISVVYPHSRHLSPKVRVFVDWIAEVFDRCPLL
CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
NGSGRPPLDTVCSKRTFEQAERAPALDTPVINEWVA
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCC
>Mature Secondary Structure
MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
DGAAYYERCVRILAEVEETEASFQINNRKPHGKLRVDMPGSLGRLVVIPALNEFRERFPD
CCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCEEEEECHHHHHHHCCC
IDLQLGLSDRPVDLLQEGVDCVIRIGVLQDSSLVARRVGLFECVTVASPAYLARCGEPHS
CEEEECCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
IDDLAEHRAVNYFSSRTGRTIDWAFLIEGKEVEVKMEGVVSVNDADAYVTCGIEGFGLIQ
HHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECEEEECCCCEEEEECCCCCCCCC
PPLFMVLPQLRSGVLKEVLTDHKPLPMPISVVYPHSRHLSPKVRVFVDWIAEVFDRCPLL
CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
NGSGRPPLDTVCSKRTFEQAERAPALDTPVINEWVA
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]