| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is cobT [H]
Identifier: 238023776
GI number: 238023776
Start: 361519
End: 363366
Strand: Reverse
Name: cobT [H]
Synonym: bglu_2g03100
Alternate gene names: 238023776
Gene position: 363366-361519 (Counterclockwise)
Preceding gene: 238023777
Following gene: 238023775
Centisome position: 12.85
GC content: 76.19
Gene sequence:
>1848_bases ATGCGCGATCCCGCCGGCCCGAACCCGCGCGCGCCGGCCGGCGCCCGCCACGATCCGGGCGAACGGCTCGGCAGGCTCGC GCGCGTGCTGACGGGCGACGCCGCCGTGCAGGTGCGGATCTCGCGCGACGGCCCGGCGCTCGTGGCCGGCAGCGAACCCT CGGCATCCACGTTGCTGCTGGTGCCGGCCCGCGCCGGCGACACGCCGCTCACCGCCGACGAACTCGCGGGCTGGGTCGAT CTGCTCGCCGCGCGGCTGCGCTTCGGCGAGCCGGCACGGCTCGCGCGCGTCGCCTCGAACGTGACGCGCGCGCTCGCGCA GACGATCGACGACCAGCGCGCGAGCCTCGCGCTGCTGGCCCGCTTCCCCGGCGCGGCGGCGCTGCTGGCGTGCCAGCGCG AGGCGGCCACGCGCGAGATGGCGCTGCGCTGGCCGAAGCTGGCCTGGCGCGAGCGCTTCGTCTGGCGCGTCTCGCGCGCG CTTCGCGGCGAACCGCCGCCGCAGACCGAACGCAGCGACTCGCTCGACGCCACGCTCGCCGCCGCCTCGGCGCTGATCGA CGCGGCGCGCGCCGCCACTTCCACGGCCGCCAGCATCGACGCGGCGGCGGCCATCGTCGAGCGGGTCCAGGCACTCGCGC GCGGCGACGCGAACAACATGATGATCGGCCTCGACCACGAGACGACGCTCGACTCCCCCGCCAGCCCCGCCGAGGTCGCG GCCGAGCACGTGGACGAGCCCATGCCAGACGGCGCACACGGCGCGCTCGACCCACTCGATGCGCGCGCAACCAATCCGGC GCGGCCCGGCACCGCGATGCTCGCCGATGCCGCTGCGGCCGCCCCCGACACTGATCCCAGTGCCGCCGGCGACAGTGCGC CCGCGCCGCGCCCGGCCGGCAACGCCACCGCATCGGCGCTGTCGGTCCCGATCACCACCGCGTTCGATACCGTCACCGAC CTGACGGGCAGCGGCGACGCCACCGCATGGCGCAGGCTGCGCGCGGCGGCACGCGCGCAGACCGCGCGCCTGAAGGACCA GCTCGAGCGCGCGCTGGAAGCCGACGAACAGCTGCACTGGCGTGGCGAGCAGGAGCGCGGCGAACTCGATCGCCGCGCGC TCGCGCGCCTGGCGACCTCGCCCGGCTACCGCACGCCGTTCCGCGTCCGGCGCGCGCGGGCCGGGCGCGACACGGCCGTC ACACTGCTGATCGATCGCAGCGGCTCGATGGCGGGCCGCAAGATCGAACTCGCGCGCCTGTGCGCCGCCGCGCTCTGCGA CGCGCTCACCCAGCTCGGTTTCGCCTGCGAGGCGCTCGGCTACAGTTCGAGCGAGGTGCCGGCGATGCGCGCCTGGCACC GGGCCTGGCTCGCCGCCGGCCACTCGCCGCGCGGCTACAACCGGTTCGTGGAGCGGCTCGACCTGGAGATCTACAAGCGC TTCGATTCGGACAATCCGAGCGGACTCGCGCGCATCGAATCCGGCCACGAGAACCCCGACGGCGAAGCGCTCGCCTGGGC CGCCGGGCGGCTGCTCGCGCACCGCGCGCGGCGGCGCATCCTGATGGTGCTGTCGGACGGCTATCCAGCCACCGGCGACG GCGATCCCGCCCGGCTGCGCGCCGACCTGCGCGCGCGCATCGCCGACATCGGCGCGCGCGGCGTCGAACTGATCGGCGTG GGCATCCTCGACGACGCCGTCGAGGCGTTCTATCCGACCCGCACCGTGGTCGAACGGCTGGGCGACCTGCCGGCCGCCGC CTTCGACACGCTCGCGCGCGCGCTGCTTCGCCAGCGCGCTCGCGCGGGCGGCCCGCCTGGCAGGGAATCAGGGCAGGGCT GCGCGTAG
Upstream 100 bases:
>100_bases CGGCCGGCCCGACGATCTACGCGAAGGTGAGCGCCGAGGACGCCGCGCTGATCCGCGACATCATCCGTCACCACATCGAC CTCGACGCGGTATGACGGCC
Downstream 100 bases:
>100_bases GGCGATTGGACGGCACGGCTCGCGATGCCGAAGTGCAGGAACCCAGCGGAATCGCGGCAGTCGCACGGCTTAGCGCCGGC GCATCGCAGACCGCCCAAAG
Product: putative cobalamin biosynthesis protein, CobT
Products: NA
Alternate protein names: Hydrogenobyrinic acid a,c-diamide cobaltochelatase subunit CobT [H]
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MRDPAGPNPRAPAGARHDPGERLGRLARVLTGDAAVQVRISRDGPALVAGSEPSASTLLLVPARAGDTPLTADELAGWVD LLAARLRFGEPARLARVASNVTRALAQTIDDQRASLALLARFPGAAALLACQREAATREMALRWPKLAWRERFVWRVSRA LRGEPPPQTERSDSLDATLAAASALIDAARAATSTAASIDAAAAIVERVQALARGDANNMMIGLDHETTLDSPASPAEVA AEHVDEPMPDGAHGALDPLDARATNPARPGTAMLADAAAAAPDTDPSAAGDSAPAPRPAGNATASALSVPITTAFDTVTD LTGSGDATAWRRLRAAARAQTARLKDQLERALEADEQLHWRGEQERGELDRRALARLATSPGYRTPFRVRRARAGRDTAV TLLIDRSGSMAGRKIELARLCAAALCDALTQLGFACEALGYSSSEVPAMRAWHRAWLAAGHSPRGYNRFVERLDLEIYKR FDSDNPSGLARIESGHENPDGEALAWAAGRLLAHRARRRILMVLSDGYPATGDGDPARLRADLRARIADIGARGVELIGV GILDDAVEAFYPTRTVVERLGDLPAAAFDTLARALLRQRARAGGPPGRESGQGCA
Sequences:
>Translated_615_residues MRDPAGPNPRAPAGARHDPGERLGRLARVLTGDAAVQVRISRDGPALVAGSEPSASTLLLVPARAGDTPLTADELAGWVD LLAARLRFGEPARLARVASNVTRALAQTIDDQRASLALLARFPGAAALLACQREAATREMALRWPKLAWRERFVWRVSRA LRGEPPPQTERSDSLDATLAAASALIDAARAATSTAASIDAAAAIVERVQALARGDANNMMIGLDHETTLDSPASPAEVA AEHVDEPMPDGAHGALDPLDARATNPARPGTAMLADAAAAAPDTDPSAAGDSAPAPRPAGNATASALSVPITTAFDTVTD LTGSGDATAWRRLRAAARAQTARLKDQLERALEADEQLHWRGEQERGELDRRALARLATSPGYRTPFRVRRARAGRDTAV TLLIDRSGSMAGRKIELARLCAAALCDALTQLGFACEALGYSSSEVPAMRAWHRAWLAAGHSPRGYNRFVERLDLEIYKR FDSDNPSGLARIESGHENPDGEALAWAAGRLLAHRARRRILMVLSDGYPATGDGDPARLRADLRARIADIGARGVELIGV GILDDAVEAFYPTRTVVERLGDLPAAAFDTLARALLRQRARAGGPPGRESGQGCA >Mature_615_residues MRDPAGPNPRAPAGARHDPGERLGRLARVLTGDAAVQVRISRDGPALVAGSEPSASTLLLVPARAGDTPLTADELAGWVD LLAARLRFGEPARLARVASNVTRALAQTIDDQRASLALLARFPGAAALLACQREAATREMALRWPKLAWRERFVWRVSRA LRGEPPPQTERSDSLDATLAAASALIDAARAATSTAASIDAAAAIVERVQALARGDANNMMIGLDHETTLDSPASPAEVA AEHVDEPMPDGAHGALDPLDARATNPARPGTAMLADAAAAAPDTDPSAAGDSAPAPRPAGNATASALSVPITTAFDTVTD LTGSGDATAWRRLRAAARAQTARLKDQLERALEADEQLHWRGEQERGELDRRALARLATSPGYRTPFRVRRARAGRDTAV TLLIDRSGSMAGRKIELARLCAAALCDALTQLGFACEALGYSSSEVPAMRAWHRAWLAAGHSPRGYNRFVERLDLEIYKR FDSDNPSGLARIESGHENPDGEALAWAAGRLLAHRARRRILMVLSDGYPATGDGDPARLRADLRARIADIGARGVELIGV GILDDAVEAFYPTRTVVERLGDLPAAAFDTLARALLRQRARAGGPPGRESGQGCA
Specific function: Catalyzes cobalt insertion in the corrin ring [H]
COG id: COG4547
COG function: function code H; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase)
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006538 - InterPro: IPR002035 [H]
Pfam domain/function: PF06213 CobT [H]
EC number: =6.6.1.2 [H]
Molecular weight: Translated: 65077; Mature: 65077
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDPAGPNPRAPAGARHDPGERLGRLARVLTGDAAVQVRISRDGPALVAGSEPSASTLLL CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCCEEEE VPARAGDTPLTADELAGWVDLLAARLRFGEPARLARVASNVTRALAQTIDDQRASLALLA EECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFPGAAALLACQREAATREMALRWPKLAWRERFVWRVSRALRGEPPPQTERSDSLDATLA HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH AASALIDAARAATSTAASIDAAAAIVERVQALARGDANNMMIGLDHETTLDSPASPAEVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHH AEHVDEPMPDGAHGALDPLDARATNPARPGTAMLADAAAAAPDTDPSAAGDSAPAPRPAG HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC NATASALSVPITTAFDTVTDLTGSGDATAWRRLRAAARAQTARLKDQLERALEADEQLHW CCCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RGEQERGELDRRALARLATSPGYRTPFRVRRARAGRDTAVTLLIDRSGSMAGRKIELARL CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHH CAAALCDALTQLGFACEALGYSSSEVPAMRAWHRAWLAAGHSPRGYNRFVERLDLEIYKR HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH FDSDNPSGLARIESGHENPDGEALAWAAGRLLAHRARRRILMVLSDGYPATGDGDPARLR HCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHH ADLRARIADIGARGVELIGVGILDDAVEAFYPTRTVVERLGDLPAAAFDTLARALLRQRA HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH RAGGPPGRESGQGCA HCCCCCCCCCCCCCC >Mature Secondary Structure MRDPAGPNPRAPAGARHDPGERLGRLARVLTGDAAVQVRISRDGPALVAGSEPSASTLLL CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCCEEEE VPARAGDTPLTADELAGWVDLLAARLRFGEPARLARVASNVTRALAQTIDDQRASLALLA EECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFPGAAALLACQREAATREMALRWPKLAWRERFVWRVSRALRGEPPPQTERSDSLDATLA HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH AASALIDAARAATSTAASIDAAAAIVERVQALARGDANNMMIGLDHETTLDSPASPAEVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHH AEHVDEPMPDGAHGALDPLDARATNPARPGTAMLADAAAAAPDTDPSAAGDSAPAPRPAG HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC NATASALSVPITTAFDTVTDLTGSGDATAWRRLRAAARAQTARLKDQLERALEADEQLHW CCCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RGEQERGELDRRALARLATSPGYRTPFRVRRARAGRDTAVTLLIDRSGSMAGRKIELARL CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHH CAAALCDALTQLGFACEALGYSSSEVPAMRAWHRAWLAAGHSPRGYNRFVERLDLEIYKR HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH FDSDNPSGLARIESGHENPDGEALAWAAGRLLAHRARRRILMVLSDGYPATGDGDPARLR HCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHH ADLRARIADIGARGVELIGVGILDDAVEAFYPTRTVVERLGDLPAAAFDTLARALLRQRA HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH RAGGPPGRESGQGCA HCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1917840 [H]