| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is mycB [H]
Identifier: 238023737
GI number: 238023737
Start: 317073
End: 318662
Strand: Direct
Name: mycB [H]
Synonym: bglu_2g02690
Alternate gene names: 238023737
Gene position: 317073-318662 (Clockwise)
Preceding gene: 238023736
Following gene: 238023738
Centisome position: 11.21
GC content: 69.06
Gene sequence:
>1590_bases ATGTCCGGACACATCGTTTACGCCATCCAGACACACGCGCAGGCCACGCCGTATCGCGCGGCGCTGTCCGATTCACGCGG CGATTTCAGCTATGCCGACCTCGACATCTTCAGCACGCGTTTCGCGCTGCGCCTGCAGTCGTATGGCTGCGTGCCGGGCG ACCGCGTGGTGATGGTGGCGAGCCGCTCGGCGCTGATGCTCGCATGCGTGATCGGCACCTTCAAGGCCGGCTGCATCCAC GTGCCGCTCGACCCGAAGATGCCGGCCGAGCGGCTGCGCTACATCCTCGCCGACATCGCGCCGGCGCTCGTGATCGCCGA CGGCGAGCTAGCCGAACGGGTTCGCGAGGCGCTGCCCGAGGCGGCGCCGGTGCTGCGCGTGAGCGACGTCGAGCGGCTTC GCGACGATGACGACTCGGCGCTGCGCGATGCCTGCGTGCGCGCGCTGCCGCTGCCCGATCTGGATGCGTCGGCCACCGCC TACTGCATCTACACCTCGGGCTCGACCGGCCGGCCCAAGGGCGTGCTGATCGCCCATCGCGCCATCATCGACTTCTTCGA CGGCACGCGCCGCGTCTACGAGGTGACGGCGCAGTCGCGCTGCGCGAGCTTCTCGCCGCTGCACTTCGACGTGTTCCTGA TGGACATGCTGTTTCCGCTCGCACAGGGCGCGCACCTGTACGTCCACGACGACGTGGTGGTGCCCGACATCATGCTCGAC GCGCTCTGCGCGCACGAGGTCACGCACTTTTCCGCGTGGGGCATGATGCTGGGCCTGCTGGCGCAGGCCGAGCGCTTCGG CAGCGCGCCGCTGCCGCATCTGAAGCAGATCCTGACCGGCACCGACGTGCCCGACATCAAGACGGTCCAGCGCTGGATGC GCAAGACGCCCGGCGTGCAGGTGATCAACGCCTACGGGCCGACCGAGGCGACCTGCGCGGCCACCGCGCACGTGATCCGC GAGATCGAGCCGGAGCGCCGCACGCTCTACCCGATCGGCGTGCCGCTTGAGCACGTGAAGGTGCTGCTGGTGGGCGACGA CGGCCGTGCGATCGACACCCCCGACACGCCCGGCGAGCTGATGGTGGGCGGCACCCAGGTGATGCAGGGCTACTGGCACC TGCCCGAGGAGACGGCCGCGCGGCTCACGCAGGTGGGCGGCGTGCCGTTCTATCGCACCGGCGACCTGTGCCGCTGGCTC GACGACGGCAGCCTGTTCTACATGGGCCGCCGCGACAACGAGGTCAAGCTCGGCGGCTACCGGATCCATCTGAACGAGGT GCGGCGCGTGATCGACAGCGTGCCGCAGGTTCACGCCTCGGAGGTCGTGGTGCTCGACACGCGCATCGGCGAGCCGGTGC TCGCAGCCGCGGTGCTGTTCGAGCAGGCGCACGCGGCCGACACCGAGCCGCGGCTCGCCGCGATCCGGCGGCGGCTCGCG GGCGAGCTACCGGCCTACATGGTGCCGCGCTATCTGACGGCGCTGGACGAGTTTCCGATGCTGTCGTCAGGGAAGACGGA CCGCAAGGCGCTGCTGTCGATTTTGCAGCAACGCATCAACACAAGCCACCAGGAGGAAGTCAATTCATGA
Upstream 100 bases:
>100_bases TGCCCGCAGGCACGACGCGACGTGCCCGCGGGACCGGTGCGCGATGCCGCCCGCCTTGCAGAAGGTGCCCCTGGAGACAC ATTGCAGGAGGGTCACCGAG
Downstream 100 bases:
>100_bases AAACCGAAGCCATCTTGATACAGGTTCTGGAAGACGTGATCGGCGTGAAGAACGTGACGCCCGACACGCGCTTTCCGGAT ATCGGCGGCAACTCGCTGAA
Product: amino acid adenylation domain-containing protein
Products: pyrophosphate; AMP; enterobactin; pyrophosphate; L-Seryl-AMP [C]
Alternate protein names: ATP-dependent tyrosine adenylase; TyrA; Tyrosine activase; ATP-dependent asparagine adenylase 2; AsnA 2; Asparagine activase 2; ATP-dependent glutamine adenylase; GlnA; Glutamine activase; ATP-dependent proline adenylase; ProA; Proline activase [H]
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MSGHIVYAIQTHAQATPYRAALSDSRGDFSYADLDIFSTRFALRLQSYGCVPGDRVVMVASRSALMLACVIGTFKAGCIH VPLDPKMPAERLRYILADIAPALVIADGELAERVREALPEAAPVLRVSDVERLRDDDDSALRDACVRALPLPDLDASATA YCIYTSGSTGRPKGVLIAHRAIIDFFDGTRRVYEVTAQSRCASFSPLHFDVFLMDMLFPLAQGAHLYVHDDVVVPDIMLD ALCAHEVTHFSAWGMMLGLLAQAERFGSAPLPHLKQILTGTDVPDIKTVQRWMRKTPGVQVINAYGPTEATCAATAHVIR EIEPERRTLYPIGVPLEHVKVLLVGDDGRAIDTPDTPGELMVGGTQVMQGYWHLPEETAARLTQVGGVPFYRTGDLCRWL DDGSLFYMGRRDNEVKLGGYRIHLNEVRRVIDSVPQVHASEVVVLDTRIGEPVLAAAVLFEQAHAADTEPRLAAIRRRLA GELPAYMVPRYLTALDEFPMLSSGKTDRKALLSILQQRINTSHQEEVNS
Sequences:
>Translated_529_residues MSGHIVYAIQTHAQATPYRAALSDSRGDFSYADLDIFSTRFALRLQSYGCVPGDRVVMVASRSALMLACVIGTFKAGCIH VPLDPKMPAERLRYILADIAPALVIADGELAERVREALPEAAPVLRVSDVERLRDDDDSALRDACVRALPLPDLDASATA YCIYTSGSTGRPKGVLIAHRAIIDFFDGTRRVYEVTAQSRCASFSPLHFDVFLMDMLFPLAQGAHLYVHDDVVVPDIMLD ALCAHEVTHFSAWGMMLGLLAQAERFGSAPLPHLKQILTGTDVPDIKTVQRWMRKTPGVQVINAYGPTEATCAATAHVIR EIEPERRTLYPIGVPLEHVKVLLVGDDGRAIDTPDTPGELMVGGTQVMQGYWHLPEETAARLTQVGGVPFYRTGDLCRWL DDGSLFYMGRRDNEVKLGGYRIHLNEVRRVIDSVPQVHASEVVVLDTRIGEPVLAAAVLFEQAHAADTEPRLAAIRRRLA GELPAYMVPRYLTALDEFPMLSSGKTDRKALLSILQQRINTSHQEEVNS >Mature_528_residues SGHIVYAIQTHAQATPYRAALSDSRGDFSYADLDIFSTRFALRLQSYGCVPGDRVVMVASRSALMLACVIGTFKAGCIHV PLDPKMPAERLRYILADIAPALVIADGELAERVREALPEAAPVLRVSDVERLRDDDDSALRDACVRALPLPDLDASATAY CIYTSGSTGRPKGVLIAHRAIIDFFDGTRRVYEVTAQSRCASFSPLHFDVFLMDMLFPLAQGAHLYVHDDVVVPDIMLDA LCAHEVTHFSAWGMMLGLLAQAERFGSAPLPHLKQILTGTDVPDIKTVQRWMRKTPGVQVINAYGPTEATCAATAHVIRE IEPERRTLYPIGVPLEHVKVLLVGDDGRAIDTPDTPGELMVGGTQVMQGYWHLPEETAARLTQVGGVPFYRTGDLCRWLD DGSLFYMGRRDNEVKLGGYRIHLNEVRRVIDSVPQVHASEVVVLDTRIGEPVLAAAVLFEQAHAADTEPRLAAIRRRLAG ELPAYMVPRYLTALDEFPMLSSGKTDRKALLSILQQRINTSHQEEVNS
Specific function: This protein is a multifunctional enzyme, able to activate and polymerize the amino acids Tyr, Asn, Gln and Pro as part of the synthesis of mycosubtilin. The Asn and Gln residues are further epimerized to the D-isomer form. The activation sites for these
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 4 acyl carrier domains [H]
Homologues:
Organism=Homo sapiens, GI187761345, Length=547, Percent_Identity=26.3254113345521, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI187761343, Length=547, Percent_Identity=26.3254113345521, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI156151445, Length=550, Percent_Identity=24, Blast_Score=110, Evalue=4e-24, Organism=Homo sapiens, GI45580730, Length=385, Percent_Identity=25.974025974026, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI115511026, Length=514, Percent_Identity=24.9027237354086, Blast_Score=99, Evalue=9e-21, Organism=Homo sapiens, GI38505220, Length=492, Percent_Identity=25.4065040650407, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI42544132, Length=502, Percent_Identity=23.7051792828685, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI58082049, Length=483, Percent_Identity=23.3954451345756, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI157311624, Length=492, Percent_Identity=22.9674796747967, Blast_Score=81, Evalue=3e-15, Organism=Homo sapiens, GI157311622, Length=492, Percent_Identity=22.9674796747967, Blast_Score=81, Evalue=3e-15, Organism=Escherichia coli, GI1786801, Length=529, Percent_Identity=30.6238185255198, Blast_Score=176, Evalue=4e-45, Organism=Escherichia coli, GI145693145, Length=549, Percent_Identity=26.2295081967213, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI1788107, Length=523, Percent_Identity=24.4741873804971, Blast_Score=105, Evalue=6e-24, Organism=Escherichia coli, GI1789201, Length=417, Percent_Identity=26.378896882494, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786810, Length=525, Percent_Identity=24.7619047619048, Blast_Score=76, Evalue=5e-15, Organism=Caenorhabditis elegans, GI32563687, Length=512, Percent_Identity=21.6796875, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17558820, Length=501, Percent_Identity=22.3552894211577, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71994694, Length=529, Percent_Identity=24.1965973534972, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71994703, Length=529, Percent_Identity=24.1965973534972, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71994690, Length=529, Percent_Identity=24.1965973534972, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17556356, Length=373, Percent_Identity=26.2734584450402, Blast_Score=94, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6319591, Length=598, Percent_Identity=24.9163879598662, Blast_Score=141, Evalue=3e-34, Organism=Saccharomyces cerevisiae, GI6319699, Length=489, Percent_Identity=22.4948875255624, Blast_Score=90, Evalue=8e-19, Organism=Drosophila melanogaster, GI24648676, Length=499, Percent_Identity=27.2545090180361, Blast_Score=119, Evalue=4e-27, Organism=Drosophila melanogaster, GI24581924, Length=523, Percent_Identity=23.9005736137667, Blast_Score=103, Evalue=4e-22, Organism=Drosophila melanogaster, GI19922652, Length=523, Percent_Identity=24.282982791587, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24648260, Length=519, Percent_Identity=21.9653179190751, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI18859661, Length=414, Percent_Identity=26.0869565217391, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24582852, Length=387, Percent_Identity=23.5142118863049, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24653035, Length=490, Percent_Identity=22.8571428571429, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI21356441, Length=415, Percent_Identity=21.4457831325301, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI24648253, Length=522, Percent_Identity=22.9885057471264, Blast_Score=76, Evalue=7e-14, Organism=Drosophila melanogaster, GI21356947, Length=504, Percent_Identity=21.6269841269841, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI161076582, Length=496, Percent_Identity=21.5725806451613, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI281365686, Length=508, Percent_Identity=21.4566929133858, Blast_Score=69, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010071 - InterPro: IPR009081 - InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR001242 - InterPro: IPR010060 - InterPro: IPR006163 - InterPro: IPR006162 [H]
Pfam domain/function: PF00501 AMP-binding; PF00668 Condensation; PF00550 PP-binding [H]
EC number: 2.7.7.- [C]
Molecular weight: Translated: 58274; Mature: 58142
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGHIVYAIQTHAQATPYRAALSDSRGDFSYADLDIFSTRFALRLQSYGCVPGDRVVMVA CCCCEEEEEECCCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCEEEEE SRSALMLACVIGTFKAGCIHVPLDPKMPAERLRYILADIAPALVIADGELAERVREALPE CCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCC AAPVLRVSDVERLRDDDDSALRDACVRALPLPDLDASATAYCIYTSGSTGRPKGVLIAHR CCCEEEHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCEEEEHH AIIDFFDGTRRVYEVTAQSRCASFSPLHFDVFLMDMLFPLAQGAHLYVHDDVVVPDIMLD HHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEECHHHHHH ALCAHEVTHFSAWGMMLGLLAQAERFGSAPLPHLKQILTGTDVPDIKTVQRWMRKTPGVQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCEE VINAYGPTEATCAATAHVIREIEPERRTLYPIGVPLEHVKVLLVGDDGRAIDTPDTPGEL EEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHEEEEEECCCCCEECCCCCCCCE MVGGTQVMQGYWHLPEETAARLTQVGGVPFYRTGDLCRWLDDGSLFYMGRRDNEVKLGGY EECHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCHHHEECCCCEEEEECCCCEEEECEE RIHLNEVRRVIDSVPQVHASEVVVLDTRIGEPVLAAAVLFEQAHAADTEPRLAAIRRRLA EEEHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GELPAYMVPRYLTALDEFPMLSSGKTDRKALLSILQQRINTSHQEEVNS CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCC >Mature Secondary Structure SGHIVYAIQTHAQATPYRAALSDSRGDFSYADLDIFSTRFALRLQSYGCVPGDRVVMVA CCCEEEEEECCCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCEEEEE SRSALMLACVIGTFKAGCIHVPLDPKMPAERLRYILADIAPALVIADGELAERVREALPE CCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCC AAPVLRVSDVERLRDDDDSALRDACVRALPLPDLDASATAYCIYTSGSTGRPKGVLIAHR CCCEEEHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCEEEEHH AIIDFFDGTRRVYEVTAQSRCASFSPLHFDVFLMDMLFPLAQGAHLYVHDDVVVPDIMLD HHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEECHHHHHH ALCAHEVTHFSAWGMMLGLLAQAERFGSAPLPHLKQILTGTDVPDIKTVQRWMRKTPGVQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCEE VINAYGPTEATCAATAHVIREIEPERRTLYPIGVPLEHVKVLLVGDDGRAIDTPDTPGEL EEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHEEEEEECCCCCEECCCCCCCCE MVGGTQVMQGYWHLPEETAARLTQVGGVPFYRTGDLCRWLDDGSLFYMGRRDNEVKLGGY EECHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCHHHEECCCCEEEEECCCCEEEECEE RIHLNEVRRVIDSVPQVHASEVVVLDTRIGEPVLAAAVLFEQAHAADTEPRLAAIRRRLA EEEHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GELPAYMVPRYLTALDEFPMLSSGKTDRKALLSILQQRINTSHQEEVNS CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: Phosphopantetheine. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 6 ATP; L-serine; 2,3-dihydroxybenzoate [C]
Specific reaction: 6 ATP + 3 L-serine + 3 2,3-dihydroxybenzoate = 6 pyrophosphate + 6 AMP + enterobactin ATP + L-serine = pyrophosphate + L-Seryl-AMP 6 ATP + 3 L-serine + 3 2,3-dihydroxybenzoate = 6 pyrophosphate + 6 AMP + enterobactin ATP + L-serine = pyrophosphate + L-Ser
General reaction: Transferases; Acyltransferases; Transferring groups other than amino-acyl groups [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10557314 [H]