| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238023688
Identifier: 238023688
GI number: 238023688
Start: 245902
End: 247434
Strand: Direct
Name: 238023688
Synonym: bglu_2g02130
Alternate gene names: NA
Gene position: 245902-247434 (Clockwise)
Preceding gene: 238023687
Following gene: 238023689
Centisome position: 8.7
GC content: 63.08
Gene sequence:
>1533_bases ATGAAGCAGAATGAATCCCGTCAGGGTGTGAACGAAACCGTCGTGCTGGAAAACGACAGCGTGTATGCCTCGCTCTGCAG CAAGATCAACCTCACGCCGGTCGCCGAGGCGCGTCCGCTCGAGGCCTTCCGCGACAACGACATGCTCTCCGAAGCGTCAG CCGACGAGCGTATCGCGCGCGGCATGAGCGCCTTCCTGGATCTGATCGCGCAGTCGAGCCAGCCGGTCGAGCGCCTCGAC AAATCGCTGCTGGACTTCCATATCGGCCAGCTCGACCGCCAGATCAGCCGCCAGCTCGACGCCGTGATGCACACGCCGGC GTTCCAGGCGCTCGAGGGGCGCTGGCGCGGTCTCAAGTTGCTCGTCGCGCGCACGGACTTTCGCAAGAACGCGAAGATCG AGGTGCTCGACGTGTCGAAGGAGGCGCTGCAGCGCGACTTCGAGGACACGCCGGAACTGATCCAGAGCGGCCTGTATCGC CTCACCTACATCGAGGAGTACGACACGCCGGGCGGCCAGCCGATCAGCGCGATGATCAGCGACTTCGAGTTCACGAACTC GCCGATGGACGTGGCGCTGCTGCGTAACATCTCGAAGGTGGCGGCGGCGGCCCACATGCCGTTCATCGGCTCGGTGGGCG CAGCATTCTTCGGCAAGCAGTCGATGGAAGAGGTGGCGGCCATTCAGGACATCGGCAACTACTTCGACCGCGCCGAGTAC ATCAAATGGAAGAGCTTCCGTGAAACCGATGACGCCCGTTATGTCGGCCTGACGATGCCGCGCGTGCTCGGCCGCCTGCC GTATGGCAAGGACACCACGCCGGTGCGTGCCTTCAATTACGAGGAGGCGGTGAAGGGCCCGGACCACGACCGGTACCTGT GGGTCAACGCGTCGTTCGCGTTCGCGGCCAATATGGTGCGCAGCTTCGTGAACAACGGCTGGTGCGTGCAGATTCGCGGC CCGCAGGCGGGCGGCAAGGTGGAGGACCTGCCGGTGCATCTGTATGACCTGGGCACCGGCGTGCAGCCGAAGATCCCGAC CGAGGTGCTGATCCCCGAGACACGCGAGTTCGAGTTCGCGAATCTCGGCTTCATCCCGCTGTCGTTCTACAAGAACCACG ACTTCGCGTGCTTCTTCTCGGCCAGCTCGACGCAGAAGCCGGCGTTGTACGAGACCAAGGAGGCGACGGCCAACAGCCGC ATCAACGCGCGCCTGCCTTACATCTTCCTGCTGTCGCGCATCGCGCATTACCTGAAGCTGATCCAGCGCGAGAACATCGG CACGACCAAGGACCGGCGTCTGCTCGAGCTCGAGCTGAACAACTGGATCAAGGGGCTCGTGACCGAGATGAAGGATCCGG ACGACGAACTGCAGGCCTCGCATCCGCTGCGCGACGCGAAGGTCACGGTCGAGGACATCGATGACAACCCGGGCTTCTTC CGCATCAAGCTCTTCATCATTCCGCACTTCCAGGTGGAGGGGATGGACATCGGCCTGTCGCTGGTTTCGCAGATGCCCAA GGCCAAGAGTTAA
Upstream 100 bases:
>100_bases GCGCAGCGAGCTCGCGCAGGTCGCCACCGCAGCCACCCAACCGGAAGGTCAGGCCTGAACGTGGTCCCAGGTATCCATAC GAACGCAGACAGGACAAGCA
Downstream 100 bases:
>100_bases GCCGCGCTGATCCGCCCAGTTCAGTGCATCAGCCGCCGGGGCCATGAAGGCTCCGGCGGTGCGGTTCGTATTTGTGCCTG CTCAACGGAGTTTCCGCATG
Product: EvpB family type VI secretion protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 510; Mature: 510
Protein sequence:
>510_residues MKQNESRQGVNETVVLENDSVYASLCSKINLTPVAEARPLEAFRDNDMLSEASADERIARGMSAFLDLIAQSSQPVERLD KSLLDFHIGQLDRQISRQLDAVMHTPAFQALEGRWRGLKLLVARTDFRKNAKIEVLDVSKEALQRDFEDTPELIQSGLYR LTYIEEYDTPGGQPISAMISDFEFTNSPMDVALLRNISKVAAAAHMPFIGSVGAAFFGKQSMEEVAAIQDIGNYFDRAEY IKWKSFRETDDARYVGLTMPRVLGRLPYGKDTTPVRAFNYEEAVKGPDHDRYLWVNASFAFAANMVRSFVNNGWCVQIRG PQAGGKVEDLPVHLYDLGTGVQPKIPTEVLIPETREFEFANLGFIPLSFYKNHDFACFFSASSTQKPALYETKEATANSR INARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNNWIKGLVTEMKDPDDELQASHPLRDAKVTVEDIDDNPGFF RIKLFIIPHFQVEGMDIGLSLVSQMPKAKS
Sequences:
>Translated_510_residues MKQNESRQGVNETVVLENDSVYASLCSKINLTPVAEARPLEAFRDNDMLSEASADERIARGMSAFLDLIAQSSQPVERLD KSLLDFHIGQLDRQISRQLDAVMHTPAFQALEGRWRGLKLLVARTDFRKNAKIEVLDVSKEALQRDFEDTPELIQSGLYR LTYIEEYDTPGGQPISAMISDFEFTNSPMDVALLRNISKVAAAAHMPFIGSVGAAFFGKQSMEEVAAIQDIGNYFDRAEY IKWKSFRETDDARYVGLTMPRVLGRLPYGKDTTPVRAFNYEEAVKGPDHDRYLWVNASFAFAANMVRSFVNNGWCVQIRG PQAGGKVEDLPVHLYDLGTGVQPKIPTEVLIPETREFEFANLGFIPLSFYKNHDFACFFSASSTQKPALYETKEATANSR INARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNNWIKGLVTEMKDPDDELQASHPLRDAKVTVEDIDDNPGFF RIKLFIIPHFQVEGMDIGLSLVSQMPKAKS >Mature_510_residues MKQNESRQGVNETVVLENDSVYASLCSKINLTPVAEARPLEAFRDNDMLSEASADERIARGMSAFLDLIAQSSQPVERLD KSLLDFHIGQLDRQISRQLDAVMHTPAFQALEGRWRGLKLLVARTDFRKNAKIEVLDVSKEALQRDFEDTPELIQSGLYR LTYIEEYDTPGGQPISAMISDFEFTNSPMDVALLRNISKVAAAAHMPFIGSVGAAFFGKQSMEEVAAIQDIGNYFDRAEY IKWKSFRETDDARYVGLTMPRVLGRLPYGKDTTPVRAFNYEEAVKGPDHDRYLWVNASFAFAANMVRSFVNNGWCVQIRG PQAGGKVEDLPVHLYDLGTGVQPKIPTEVLIPETREFEFANLGFIPLSFYKNHDFACFFSASSTQKPALYETKEATANSR INARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNNWIKGLVTEMKDPDDELQASHPLRDAKVTVEDIDDNPGFF RIKLFIIPHFQVEGMDIGLSLVSQMPKAKS
Specific function: Unknown
COG id: COG3517
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57623; Mature: 57623
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQNESRQGVNETVVLENDSVYASLCSKINLTPVAEARPLEAFRDNDMLSEASADERIAR CCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHCCHHHHHHH GMSAFLDLIAQSSQPVERLDKSLLDFHIGQLDRQISRQLDAVMHTPAFQALEGRWRGLKL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEE LVARTDFRKNAKIEVLDVSKEALQRDFEDTPELIQSGLYRLTYIEEYDTPGGQPISAMIS EEEECCCCCCCEEEEEECCHHHHHCCCCCCHHHHHCCCEEEEEEEECCCCCCCHHHHHHH DFEFTNSPMDVALLRNISKVAAAAHMPFIGSVGAAFFGKQSMEEVAAIQDIGNYFDRAEY HHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH IKWKSFRETDDARYVGLTMPRVLGRLPYGKDTTPVRAFNYEEAVKGPDHDRYLWVNASFA HHHCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCEEEECHHHHCCCCCCCCEEEEECHHH FAANMVRSFVNNGWCVQIRGPQAGGKVEDLPVHLYDLGTGVQPKIPTEVLIPETREFEFA HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCEE NLGFIPLSFYKNHDFACFFSASSTQKPALYETKEATANSRINARLPYIFLLSRIAHYLKL CCCCEEEEEECCCCEEEEEECCCCCCCCCEECHHHCCCCCCCCCCHHHHHHHHHHHHHHH IQRENIGTTKDRRLLELELNNWIKGLVTEMKDPDDELQASHPLRDAKVTVEDIDDNPGFF HHHCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEECCCCCCEE RIKLFIIPHFQVEGMDIGLSLVSQMPKAKS EEEEEEEECEEECCCHHHHHHHHCCCCCCC >Mature Secondary Structure MKQNESRQGVNETVVLENDSVYASLCSKINLTPVAEARPLEAFRDNDMLSEASADERIAR CCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHCCHHHHHHH GMSAFLDLIAQSSQPVERLDKSLLDFHIGQLDRQISRQLDAVMHTPAFQALEGRWRGLKL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEE LVARTDFRKNAKIEVLDVSKEALQRDFEDTPELIQSGLYRLTYIEEYDTPGGQPISAMIS EEEECCCCCCCEEEEEECCHHHHHCCCCCCHHHHHCCCEEEEEEEECCCCCCCHHHHHHH DFEFTNSPMDVALLRNISKVAAAAHMPFIGSVGAAFFGKQSMEEVAAIQDIGNYFDRAEY HHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH IKWKSFRETDDARYVGLTMPRVLGRLPYGKDTTPVRAFNYEEAVKGPDHDRYLWVNASFA HHHCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCEEEECHHHHCCCCCCCCEEEEECHHH FAANMVRSFVNNGWCVQIRGPQAGGKVEDLPVHLYDLGTGVQPKIPTEVLIPETREFEFA HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCEE NLGFIPLSFYKNHDFACFFSASSTQKPALYETKEATANSRINARLPYIFLLSRIAHYLKL CCCCEEEEEECCCCEEEEEECCCCCCCCCEECHHHCCCCCCCCCCHHHHHHHHHHHHHHH IQRENIGTTKDRRLLELELNNWIKGLVTEMKDPDDELQASHPLRDAKVTVEDIDDNPGFF HHHCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEECCCCCCEE RIKLFIIPHFQVEGMDIGLSLVSQMPKAKS EEEEEEEECEEECCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA