| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is xylX [H]
Identifier: 238023596
GI number: 238023596
Start: 102702
End: 103979
Strand: Reverse
Name: xylX [H]
Synonym: bglu_2g00990
Alternate gene names: 238023596
Gene position: 103979-102702 (Counterclockwise)
Preceding gene: 238023598
Following gene: 238023595
Centisome position: 3.68
GC content: 66.2
Gene sequence:
>1278_bases ATGAGTGAAACCTGGCAAAGCATCGATACGCGTGCACTGCGCGGCCGCGCGGAAGCCGACCGTATCGCCCCGTCGCTCTA CTACGATCCGCAGATCTTCGAGGCCGAGCTCGAGCGCATCTTCTACAAGACCTGGATCTGGGTCGCGCACGAAAGCGAGC TGCCGCAGCCCGGCGACTTCCGCACCACCACGATCGGCCGCCAGCCGGTGATCGTGGTGCGCGACAGGACGGGCACCGTC AACGTGCTGCAGAACCGCTGCCGCCACCGCGGCGCGACGGTCTGCGAGGAGCACCAGGGCAACGCAAAGGGCTTCACCTG CCCGTACCACAGCTGGTCCTACGCGCTCGACGGCGCGCTGCGCGCGCTGCCATACGGCGACGGCTACGAGGGCGTGTGCG AGAAGGGCGACCTGCCGCTCGAAAAGCTGCGCGTCGGCATCTATCAAGGCCTGATCTTCGCGAGCTTCAATCAGGAAATC GAACCGCTCGAGGATTTCCTCGGCGGCGCCAAGCCCTGGATCGACCTGTTCATGAAGCAGGGCGCCGGCTACCCGATCAA GTCGAACGGCGAGCACAAGTTCCGCTTCAAGGGCAACTGGAAGATCCAGCTCGAGAACACCACCGACCTGTATCACTTCC CGGTGGTGCACAAGTCGTGGATGAAATCGATCGACGAACAGACGGCCGAGGTGATCACCCGCTTCATGACCAGCGACAAG GCATTCTGCCGGTCGCTGGGCAACGGCCACAGCCTGGCCGTGCTGGTGCCCGAAATCGTCGACCTCGACGTGGACGACGG CGCGCCGCTGCCCGAGCGATACGACGCGCTGGTCGCGCAACTGTCCGCAAGGCACGCGCCGGAGGAGGTGCGCCGGATCG TGCGCTCGCTGATGGGCGTCGGCTTCAACCTGAACCTGTTCCCGAACCTCGCGCTGTCGATGGCGTTCTTCCGCGTGCTG CGTCCGATCTCCGCCGAGGAAACCGAGATCCGTCACGTCGCGCTGGCGATGGACGGCGGCCCCGAGGAAGCGAACCGCGT GCGCCTGCGGATCCACGAGCATTTCCAGGGCCCGCTCGGTTTCGGCAGCCCCGACGATGCTGAAGCCTGGGAGCGCGTGC AGCGCGGCGCGCATGCCGGCCCGCACACGCCGATCCTGGTGAACCGCGGCCTGAACCGCGAGACCAGCGCACCGAACGGT GAGAAGACCGCGCATGCGACCGACGAGACGGGCATGCGCGAGGCATACGCGCAATGGCGCAGGATGATGGAGGCATGA
Upstream 100 bases:
>100_bases GACGCATGACACCCCCCGCTCGACACTATCGCCAAGCGCCGGCCAGCTCCGGCGATCGACAACCCCGCGTTCCATCGCGA TCACCACGATACCTCCGACC
Downstream 100 bases:
>100_bases TGAACCAGCACAACACGCCGGGGTCCGACGACACCTTCGCGCGCGCCCAGCGCTTCATCTGGCGCGAGGCCGAGATGCTC GACCGCCGCGAGTATCGCGA
Product: Benzoate 1,2-dioxygenase subunit alpha
Products: NAD; cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol [C]
Alternate protein names: NA
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MSETWQSIDTRALRGRAEADRIAPSLYYDPQIFEAELERIFYKTWIWVAHESELPQPGDFRTTTIGRQPVIVVRDRTGTV NVLQNRCRHRGATVCEEHQGNAKGFTCPYHSWSYALDGALRALPYGDGYEGVCEKGDLPLEKLRVGIYQGLIFASFNQEI EPLEDFLGGAKPWIDLFMKQGAGYPIKSNGEHKFRFKGNWKIQLENTTDLYHFPVVHKSWMKSIDEQTAEVITRFMTSDK AFCRSLGNGHSLAVLVPEIVDLDVDDGAPLPERYDALVAQLSARHAPEEVRRIVRSLMGVGFNLNLFPNLALSMAFFRVL RPISAEETEIRHVALAMDGGPEEANRVRLRIHEHFQGPLGFGSPDDAEAWERVQRGAHAGPHTPILVNRGLNRETSAPNG EKTAHATDETGMREAYAQWRRMMEA
Sequences:
>Translated_425_residues MSETWQSIDTRALRGRAEADRIAPSLYYDPQIFEAELERIFYKTWIWVAHESELPQPGDFRTTTIGRQPVIVVRDRTGTV NVLQNRCRHRGATVCEEHQGNAKGFTCPYHSWSYALDGALRALPYGDGYEGVCEKGDLPLEKLRVGIYQGLIFASFNQEI EPLEDFLGGAKPWIDLFMKQGAGYPIKSNGEHKFRFKGNWKIQLENTTDLYHFPVVHKSWMKSIDEQTAEVITRFMTSDK AFCRSLGNGHSLAVLVPEIVDLDVDDGAPLPERYDALVAQLSARHAPEEVRRIVRSLMGVGFNLNLFPNLALSMAFFRVL RPISAEETEIRHVALAMDGGPEEANRVRLRIHEHFQGPLGFGSPDDAEAWERVQRGAHAGPHTPILVNRGLNRETSAPNG EKTAHATDETGMREAYAQWRRMMEA >Mature_424_residues SETWQSIDTRALRGRAEADRIAPSLYYDPQIFEAELERIFYKTWIWVAHESELPQPGDFRTTTIGRQPVIVVRDRTGTVN VLQNRCRHRGATVCEEHQGNAKGFTCPYHSWSYALDGALRALPYGDGYEGVCEKGDLPLEKLRVGIYQGLIFASFNQEIE PLEDFLGGAKPWIDLFMKQGAGYPIKSNGEHKFRFKGNWKIQLENTTDLYHFPVVHKSWMKSIDEQTAEVITRFMTSDKA FCRSLGNGHSLAVLVPEIVDLDVDDGAPLPERYDALVAQLSARHAPEEVRRIVRSLMGVGFNLNLFPNLALSMAFFRVLR PISAEETEIRHVALAMDGGPEEANRVRLRIHEHFQGPLGFGSPDDAEAWERVQRGAHAGPHTPILVNRGLNRETSAPNGE KTAHATDETGMREAYAQWRRMMEA
Specific function: Part Of The Multicomponent 3-Phenylpropionate Dioxygenase. Converts 3-Phenylpropionic Acid (Pp) Into Cis-3-(3- Carboxyethyl)-3,5-Cyclohexadiene-1,2-Diol (Pp-Dihydrodiol). [C]
COG id: COG4638
COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Rieske domain [H]
Homologues:
Organism=Escherichia coli, GI1788888, Length=431, Percent_Identity=29.0023201856148, Blast_Score=175, Evalue=6e-45, Organism=Escherichia coli, GI1788103, Length=210, Percent_Identity=30.4761904761905, Blast_Score=91, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017639 - InterPro: IPR017941 - InterPro: IPR015881 - InterPro: IPR015879 - InterPro: IPR001663 [H]
Pfam domain/function: PF00355 Rieske; PF00848 Ring_hydroxyl_A [H]
EC number: 1.14.1.- [C]
Molecular weight: Translated: 48030; Mature: 47899
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS00570 RING_HYDROXYL_ALPHA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETWQSIDTRALRGRAEADRIAPSLYYDPQIFEAELERIFYKTWIWVAHESELPQPGDF CCCHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCC RTTTIGRQPVIVVRDRTGTVNVLQNRCRHRGATVCEEHQGNAKGFTCPYHSWSYALDGAL EEEECCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHCCCCCCCEECCCCCCHHHHHHHH RALPYGDGYEGVCEKGDLPLEKLRVGIYQGLIFASFNQEIEPLEDFLGGAKPWIDLFMKQ HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH GAGYPIKSNGEHKFRFKGNWKIQLENTTDLYHFPVVHKSWMKSIDEQTAEVITRFMTSDK CCCCCCCCCCCEEEEEECCEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCH AFCRSLGNGHSLAVLVPEIVDLDVDDGAPLPERYDALVAQLSARHAPEEVRRIVRSLMGV HHHHHCCCCCEEEEEECHHHEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC GFNLNLFPNLALSMAFFRVLRPISAEETEIRHVALAMDGGPEEANRVRLRIHEHFQGPLG CCCEECCHHHHHHHHHHHHHCCCCCCCHHEEEEEEEECCCCCCCCCEEEEEEHHCCCCCC FGSPDDAEAWERVQRGAHAGPHTPILVNRGLNRETSAPNGEKTAHATDETGMREAYAQWR CCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH RMMEA HHHCC >Mature Secondary Structure SETWQSIDTRALRGRAEADRIAPSLYYDPQIFEAELERIFYKTWIWVAHESELPQPGDF CCHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCC RTTTIGRQPVIVVRDRTGTVNVLQNRCRHRGATVCEEHQGNAKGFTCPYHSWSYALDGAL EEEECCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHCCCCCCCEECCCCCCHHHHHHHH RALPYGDGYEGVCEKGDLPLEKLRVGIYQGLIFASFNQEIEPLEDFLGGAKPWIDLFMKQ HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH GAGYPIKSNGEHKFRFKGNWKIQLENTTDLYHFPVVHKSWMKSIDEQTAEVITRFMTSDK CCCCCCCCCCCEEEEEECCEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCH AFCRSLGNGHSLAVLVPEIVDLDVDDGAPLPERYDALVAQLSARHAPEEVRRIVRSLMGV HHHHHCCCCCEEEEEECHHHEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC GFNLNLFPNLALSMAFFRVLRPISAEETEIRHVALAMDGGPEEANRVRLRIHEHFQGPLG CCCEECCHHHHHHHHHHHHHCCCCCCCHHEEEEEEEECCCCCCCCCEEEEEEHHCCCCCC FGSPDDAEAWERVQRGAHAGPHTPILVNRGLNRETSAPNGEKTAHATDETGMREAYAQWR CCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH RMMEA HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: 2Fe-2S. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NADH; Proton; O2; 3-phenylpropionate [C]
Specific reaction: 3-phenylpropionate + NADH + Proton + O2 = cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD 3-phenylpropionate + NADH + O2 = cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1740120; 1938949 [H]