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The map label for this gene is rhaR [C]

Identifier: 237814460

GI number: 237814460

Start: 4078038

End: 4079225

Strand: Reverse

Name: rhaR [C]

Synonym: GBP346_A4258

Alternate gene names: 237814460

Gene position: 4079225-4078038 (Counterclockwise)

Preceding gene: 237814462

Following gene: 237814459

Centisome position: 99.53

GC content: 71.55

Gene sequence:

>1188_bases
ATGGCGTCTCCAGGAGATGAATCGCGCGGCGCGTCGGTGCCGACGGCGGGCTGTTTGCGGTATTTGAGCAAGTCCGGGAC
AATCTGCGTTGATCCGAAACGCCATTTTCTTGTTATGAAAAAACCGCTGCGCGGCACCGGCCGGCCCGGGGTCGCCATCC
TGCTGCCGCCTCGGCTGTTGGGCGGCTATGTGTTTCTCACGCAAGAGCTGCTGCTGCTCGCCGGCACGATGAAGGCGCGC
AGCCTCGACGTCGTGAACAGCCGGCTGTTCGACATCGCGATCCTGTCGCACGACGGGCGGCCGGTGCCGACGATCGGCGG
CCTCGACGTGCCGGCGACGGCCGCGCTGAGCGATGCCGACGCGCACGAAGTGGTGATCGTGCCCGCGCAGTTCATGCCGG
ACGCGCAGATCGGCGCGCTCGAGCGCGTGTTCATCGATTGGCTCGAGCGCCGCTACGCGGCGGGCGCGCTCGTCGTCGGG
CTCAACGCGGCGCCGCTCCTCGCGAAGGCCGGCCTGCTCGACGGCCGCGGCGCGACCGGGCTGCCGAGCGAGCGCACGCT
GTTCGCGCGGCATTTTCCGGCGGTGCGCTACACGCCGTCGAAGCCGCTCGTCGTCGACGGGCGGCTCATCACGGTGAGCG
GGATCAACCCGGCCGTCGACGCGTGCGCGTACGTGATCGATTACTGCTTCGGCGCGGGCGTGTCGCAGCGGCTGCTGCGG
GTCGCGCTCACGCAATCGCTGCCGTCGTACGAGCACATGGCCGTGTGGGCCGCGCAGTACAAGCGGCACGGCGACGCGCC
GGTGCTCGCGGTGCAGGACAGCGTCGAGCGCGCGCTCGCGCACCCGCCGACACTCGCCGAGCTCGCCGCGCGCGCGGCGA
TGAGTGAGCGCACGCTGTCGCGCCGTTTCGCGGCCGCGACCGGGCTCACGCTGCGGCGCTACGTCGCCGCGCTGCGCGTC
GAGCTCGCCGCGTTCCTGCTGCGCACGAGCCGGATGACGCTCGAGCACATCGCCGACGAATGCGGCTTCGCGAGCGCGAG
CGCGCTAAGCCATGCGTTTCTCGCGGGGCAGGGATGCAGCCCGATTCAGTACCGGAATCGGCATCGGCCCGATGCGCGGC
GCGAGCCGGCAAGCGGCGGCGGCACGGGCGGCACGGCGGCGGGGTCGGGCGAAGGCGCGGCGAGCTAG

Upstream 100 bases:

>100_bases
CTCCCAGCGCTCGTGGTGCGGCATCACCTCGGATTCGATGAAGCGGCGGACGGACTCGCGGAACTGCTCGTGTTCTTCGG
CGAAGATGGTGCGGGGAATC

Downstream 100 bases:

>100_bases
GGGACGAGCCGGGAAATGAGGGGGGAGGCCGGATGGCCCACGGTCGCACGGCCCCGTATCGCTTGGCCGCATGGCCGGAT
AGGCGACGCGGCCGCGACGG

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator AraC Family; AraC-Family Transcriptional Regulator; AraC Family Transcription Regulator; Transcriptional Activator FtrA; ThiJ/PfpI Domain-Containing Protein; ADPA Family Transcriptional Regulator; AraC Family Regulatory Protein; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Arac Family; AraC Family Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC-Family Protein; DJ-1/PfpI Family; ADPA-Family Transcriptional Regulator; AraC Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain-Containing Protein AraC Type; HTH-Type Transcriptional Regulator GlxA; HTH-Type Transcriptional Regulator Glxa; DJ-1/PfpI Family Protein; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MASPGDESRGASVPTAGCLRYLSKSGTICVDPKRHFLVMKKPLRGTGRPGVAILLPPRLLGGYVFLTQELLLLAGTMKAR
SLDVVNSRLFDIAILSHDGRPVPTIGGLDVPATAALSDADAHEVVIVPAQFMPDAQIGALERVFIDWLERRYAAGALVVG
LNAAPLLAKAGLLDGRGATGLPSERTLFARHFPAVRYTPSKPLVVDGRLITVSGINPAVDACAYVIDYCFGAGVSQRLLR
VALTQSLPSYEHMAVWAAQYKRHGDAPVLAVQDSVERALAHPPTLAELAARAAMSERTLSRRFAAATGLTLRRYVAALRV
ELAAFLLRTSRMTLEHIADECGFASASALSHAFLAGQGCSPIQYRNRHRPDARREPASGGGTGGTAAGSGEGAAS

Sequences:

>Translated_395_residues
MASPGDESRGASVPTAGCLRYLSKSGTICVDPKRHFLVMKKPLRGTGRPGVAILLPPRLLGGYVFLTQELLLLAGTMKAR
SLDVVNSRLFDIAILSHDGRPVPTIGGLDVPATAALSDADAHEVVIVPAQFMPDAQIGALERVFIDWLERRYAAGALVVG
LNAAPLLAKAGLLDGRGATGLPSERTLFARHFPAVRYTPSKPLVVDGRLITVSGINPAVDACAYVIDYCFGAGVSQRLLR
VALTQSLPSYEHMAVWAAQYKRHGDAPVLAVQDSVERALAHPPTLAELAARAAMSERTLSRRFAAATGLTLRRYVAALRV
ELAAFLLRTSRMTLEHIADECGFASASALSHAFLAGQGCSPIQYRNRHRPDARREPASGGGTGGTAAGSGEGAAS
>Mature_394_residues
ASPGDESRGASVPTAGCLRYLSKSGTICVDPKRHFLVMKKPLRGTGRPGVAILLPPRLLGGYVFLTQELLLLAGTMKARS
LDVVNSRLFDIAILSHDGRPVPTIGGLDVPATAALSDADAHEVVIVPAQFMPDAQIGALERVFIDWLERRYAAGALVVGL
NAAPLLAKAGLLDGRGATGLPSERTLFARHFPAVRYTPSKPLVVDGRLITVSGINPAVDACAYVIDYCFGAGVSQRLLRV
ALTQSLPSYEHMAVWAAQYKRHGDAPVLAVQDSVERALAHPPTLAELAARAAMSERTLSRRFAAATGLTLRRYVAALRVE
LAAFLLRTSRMTLEHIADECGFASASALSHAFLAGQGCSPIQYRNRHRPDARREPASGGGTGGTAAGSGEGAAS

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41746; Mature: 41614

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPGDESRGASVPTAGCLRYLSKSGTICVDPKRHFLVMKKPLRGTGRPGVAILLPPRLL
CCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCCCCCEEEEECHHHH
GGYVFLTQELLLLAGTMKARSLDVVNSRLFDIAILSHDGRPVPTIGGLDVPATAALSDAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCC
AHEVVIVPAQFMPDAQIGALERVFIDWLERRYAAGALVVGLNAAPLLAKAGLLDGRGATG
CCEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCCCCCC
LPSERTLFARHFPAVRYTPSKPLVVDGRLITVSGINPAVDACAYVIDYCFGAGVSQRLLR
CCCCCCHHHHHCCCEEECCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHH
VALTQSLPSYEHMAVWAAQYKRHGDAPVLAVQDSVERALAHPPTLAELAARAAMSERTLS
HHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RRFAAATGLTLRRYVAALRVELAAFLLRTSRMTLEHIADECGFASASALSHAFLAGQGCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
PIQYRNRHRPDARREPASGGGTGGTAAGSGEGAAS
CHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASPGDESRGASVPTAGCLRYLSKSGTICVDPKRHFLVMKKPLRGTGRPGVAILLPPRLL
CCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCCCCCEEEEECHHHH
GGYVFLTQELLLLAGTMKARSLDVVNSRLFDIAILSHDGRPVPTIGGLDVPATAALSDAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCC
AHEVVIVPAQFMPDAQIGALERVFIDWLERRYAAGALVVGLNAAPLLAKAGLLDGRGATG
CCEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCCCCCC
LPSERTLFARHFPAVRYTPSKPLVVDGRLITVSGINPAVDACAYVIDYCFGAGVSQRLLR
CCCCCCHHHHHCCCEEECCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHH
VALTQSLPSYEHMAVWAAQYKRHGDAPVLAVQDSVERALAHPPTLAELAARAAMSERTLS
HHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RRFAAATGLTLRRYVAALRVELAAFLLRTSRMTLEHIADECGFASASALSHAFLAGQGCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
PIQYRNRHRPDARREPASGGGTGGTAAGSGEGAAS
CHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA