| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237814017
Identifier: 237814017
GI number: 237814017
Start: 3663059
End: 3664048
Strand: Direct
Name: 237814017
Synonym: GBP346_A3801
Alternate gene names: NA
Gene position: 3663059-3664048 (Clockwise)
Preceding gene: 237814016
Following gene: 237814018
Centisome position: 89.37
GC content: 66.77
Gene sequence:
>990_bases ATGACGCAAACGGTCCAGGCCCAGATCGCCTACTTCGGCAAGATCCCGTCGCGCGGCGACTTCGTGAAGAGCGCGCACAA CCCGCAGTTGCTGCAAACGCTCGACCACTGGATCGCGCGCGCGATGGAGCTCCTCGCCGACGACCCGCGCTGGAAGATCG TCTACGAAAGCGCGAAACCGATGCACTTCGCGTTTCTCGGCTCGAAGAGCCGGCTGGCGATCGCGGGCCACATGATCGCG AGCCACGACGCGTCGAACCGGCGCTTCCCGTTCCTCGCCGCGACGGCGCTCGAAGTCGATCGCCCGCTCACGTTCCTCGC GCGCAGCCCGCTTGCGTTCGCGCGGCTCTGGTCGCGCGCCGCCGCGCAGATGCAGTCGCTCCTCGGCCCGCAGGAGCCGC CCGGCGCGCTGCAGGCGCTCGGCGACACGCAAGTGCCGATCGACACGGGCGGCCCGGGCAGCGCGCACGACGGCACGTTC AACGATTTCGTCGAACACCAGACCCTGTTCGGCCTCGAGCAGATGCTGCTCGCGAGCGGCCATCCGGTGAAGCTGCGCGG CGCGATGCTCGCGCTCGGCTCGCTGCTGCGCCCGGTGATGCAAAGCGGCACGTCGCACATCGAGCGCGGCCTCACGCTGC CGCTGCCGACCGATCCGTTCTACCGGAGCCTCGTCGCCGCATTCTGGCTCGAACTCGTCGCGCCGTTCGTGTCGCGCGCC GATTTCGAGCTCGCGATCTTCATCGGCACGATCGCCGAGCGCGAGCGGCTCATCATCGGCTTCAACGGCGCGTCCGCGAA AACCCTGCACAGCGTGGTCGATCCGCAGACTTACGCCGAACACAACATCGACATCGACGATCCGGAATGGATCGACGCAC ATGCGCAAAACGACCATGGGATCAGCAAGCTCGTCAGTTATCTCGATCAACCGCAACTGTCGCTTCGCGTGTGCATCGAC ACGTTCCGCGAAGCATTCGCCGGAGCGTGA
Upstream 100 bases:
>100_bases CGGGCGGCGCGGCCAATGCGACGGCGCAACCCGGCTCGGGCGCCGCGGCCCCGCAGGTCGCCGCCACGGCCGCTTCCGCA TCGAACGCACAGGGGGCGCA
Downstream 100 bases:
>100_bases CGAGATGACGAAGCCCCGCCTGCCCCTGCTGCGCGCCTGCCGCTTCGCGCTCGCGCTCGCCGCGCTCGCGCTCGGCGGCG CCGCGCGCGCCGACAACGTC
Product: type VI secretion-associated protein, family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDHWIARAMELLADDPRWKIVYESAKPMHFAFLGSKSRLAIAGHMIA SHDASNRRFPFLAATALEVDRPLTFLARSPLAFARLWSRAAAQMQSLLGPQEPPGALQALGDTQVPIDTGGPGSAHDGTF NDFVEHQTLFGLEQMLLASGHPVKLRGAMLALGSLLRPVMQSGTSHIERGLTLPLPTDPFYRSLVAAFWLELVAPFVSRA DFELAIFIGTIAERERLIIGFNGASAKTLHSVVDPQTYAEHNIDIDDPEWIDAHAQNDHGISKLVSYLDQPQLSLRVCID TFREAFAGA
Sequences:
>Translated_329_residues MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDHWIARAMELLADDPRWKIVYESAKPMHFAFLGSKSRLAIAGHMIA SHDASNRRFPFLAATALEVDRPLTFLARSPLAFARLWSRAAAQMQSLLGPQEPPGALQALGDTQVPIDTGGPGSAHDGTF NDFVEHQTLFGLEQMLLASGHPVKLRGAMLALGSLLRPVMQSGTSHIERGLTLPLPTDPFYRSLVAAFWLELVAPFVSRA DFELAIFIGTIAERERLIIGFNGASAKTLHSVVDPQTYAEHNIDIDDPEWIDAHAQNDHGISKLVSYLDQPQLSLRVCID TFREAFAGA >Mature_328_residues TQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDHWIARAMELLADDPRWKIVYESAKPMHFAFLGSKSRLAIAGHMIAS HDASNRRFPFLAATALEVDRPLTFLARSPLAFARLWSRAAAQMQSLLGPQEPPGALQALGDTQVPIDTGGPGSAHDGTFN DFVEHQTLFGLEQMLLASGHPVKLRGAMLALGSLLRPVMQSGTSHIERGLTLPLPTDPFYRSLVAAFWLELVAPFVSRAD FELAIFIGTIAERERLIIGFNGASAKTLHSVVDPQTYAEHNIDIDDPEWIDAHAQNDHGISKLVSYLDQPQLSLRVCIDT FREAFAGA
Specific function: Unknown
COG id: COG3913
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36142; Mature: 36010
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDHWIARAMELLADDPRWKIVYESAKP CCCCHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC MHFAFLGSKSRLAIAGHMIASHDASNRRFPFLAATALEVDRPLTFLARSPLAFARLWSRA EEEEEECCCCCEEEEHHHHHCCCCCCCCCCEEEHHHHHHCCCHHHHHCCHHHHHHHHHHH AAQMQSLLGPQEPPGALQALGDTQVPIDTGGPGSAHDGTFNDFVEHQTLFGLEQMLLASG HHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC HPVKLRGAMLALGSLLRPVMQSGTSHIERGLTLPLPTDPFYRSLVAAFWLELVAPFVSRA CCEEHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC DFELAIFIGTIAERERLIIGFNGASAKTLHSVVDPQTYAEHNIDIDDPEWIDAHAQNDHG CCEEEEEEEHHCCCCEEEEEECCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCC ISKLVSYLDQPQLSLRVCIDTFREAFAGA HHHHHHHHCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure TQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDHWIARAMELLADDPRWKIVYESAKP CCCHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC MHFAFLGSKSRLAIAGHMIASHDASNRRFPFLAATALEVDRPLTFLARSPLAFARLWSRA EEEEEECCCCCEEEEHHHHHCCCCCCCCCCEEEHHHHHHCCCHHHHHCCHHHHHHHHHHH AAQMQSLLGPQEPPGALQALGDTQVPIDTGGPGSAHDGTFNDFVEHQTLFGLEQMLLASG HHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC HPVKLRGAMLALGSLLRPVMQSGTSHIERGLTLPLPTDPFYRSLVAAFWLELVAPFVSRA CCEEHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC DFELAIFIGTIAERERLIIGFNGASAKTLHSVVDPQTYAEHNIDIDDPEWIDAHAQNDHG CCEEEEEEEHHCCCCEEEEEECCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCC ISKLVSYLDQPQLSLRVCIDTFREAFAGA HHHHHHHHCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA