Click here to switch to the map view.

The map label for this gene is ybfB [H]

Identifier: 237813991

GI number: 237813991

Start: 3639035

End: 3640318

Strand: Reverse

Name: ybfB [H]

Synonym: GBP346_A3774

Alternate gene names: 237813991

Gene position: 3640318-3639035 (Counterclockwise)

Preceding gene: 237813994

Following gene: 237813989

Centisome position: 88.82

GC content: 70.25

Gene sequence:

>1284_bases
ATGAACTGGGCGGCAAGGCGGATAGGCGGGCGTTTCCATTACGGTTGGCTCGCGGCGGCGGTGGTGTTCCTGATTCTTCT
CGCGGCGGCGGGCACCCGCGCGACGCCGAGCGTGCTGATGGTGCCGCTCGAGCATGAGTTCGGCTGGAGCCGCGCGTCGA
TCTCGCTCGCGATTTCGGTGAACATCGCGCTCTATGGCCTGACCGGGCCGTTCGCGGCCGCGGCGATGCAGCGTTTCGGC
GTGCGGCCGACAGTGCTCGCCGCGCTCGGCGTGATGGGGATGGGCGTCGCGTTGTCGTCGATGATGACGGCGACATGGCA
GATGGTGCTCGTCTGGGGCGTGATGGTCGGCGGCGCGACGGGCGTCGCGGCGCTCACGCTGTCGGCGACGTTCGTCACGC
GCTGGTTCGTCGCGCGGCGCGGCCTCGTGATGGGGCTGCTGACCGCGAGTTCCGCGACGGGCCAGCTCGTGTTCCTGCCG
ATGCTCGCGGCGATCGCGCAGCGCCACGGCTGGCGGCCCGTCGTGCTGACGGTCGCGGTGGCGGCGGCGATCGCGGTGCC
GCTCGTCGCGCTGCTGCTGCCGGAGCGGCCGTCGGACGTCGGGCTGCGCCCGTACGGCGAGCCCGCGAACGCGCCGCGCG
CGGACGACGGCGCGAAGCGCAACCCGATCGCGGTCGCGTTCGGCATGCTCGCGACCGCATCGAAGACGCGCGACTTCTGG
CTACTGTTCTTCAGTTTCTTCATCTGCGGCGCGAGCACGAACGGCTACGTCGGCACGCATTTGATCGCGATGTGCAGCGA
CTACGGGATGACGCAGGTGCAGGGCGCGTCGCTGCTCGCGGCGATGGGCGTGTTCGACCTGATCGGCACGACGATGTCCG
GCTGGCTGTCCGACCGCTACGACAGCCGCGTGCTGCTGTTCTGGTACTACGGGCTGCGCGGGCTGTCGCTGATCTATCTG
CCGCATGCGTTCGGCATCGATTTCTTCGGGCTGCCGCTTTTCGCGGTGTTCTACGGGCTCGACTGGATCGCGACCGTGCC
GCCCACCGTGCGCCTCGCCACCGACGTGTACGGCAAGGACGCGGCGCCCGTCGTGTTCGGCTGGATCGTCGCGGGCCACC
AGCTCGGCGCGGCGTTCGCGGCGCTCGGCGCCGGCATGCTGCGCGCGAGCCTCGGCACGTATACGGTTGCGTCGATGATT
TCGGGCGGGCTGTGCATCGTCGGCGCGCTGATCGTGCTGCGGATCAACCGGGGGACGGCGCGGGTATCGGCGAGCGCGGC
TTGA

Upstream 100 bases:

>100_bases
GCAACAACTTGTGACCGATCGGTAACAAAGATCGGCGCATGTCCCTCAACCACCGGCGCGCCGACGGCGCTCGGCGCGGC
CGGCGTCAGGAGCAAAACGA

Downstream 100 bases:

>100_bases
ACGGCGGGGCGATGGCCGCGCCTCGGGTACGGGCGGCGCGGCCGACGCAGCGATCGTGGCGGCGGCCGATTTCGCCGCGG
GCGCCGATGCGGGAAGGTCG

Product: transporter, major facilitator family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MNWAARRIGGRFHYGWLAAAVVFLILLAAAGTRATPSVLMVPLEHEFGWSRASISLAISVNIALYGLTGPFAAAAMQRFG
VRPTVLAALGVMGMGVALSSMMTATWQMVLVWGVMVGGATGVAALTLSATFVTRWFVARRGLVMGLLTASSATGQLVFLP
MLAAIAQRHGWRPVVLTVAVAAAIAVPLVALLLPERPSDVGLRPYGEPANAPRADDGAKRNPIAVAFGMLATASKTRDFW
LLFFSFFICGASTNGYVGTHLIAMCSDYGMTQVQGASLLAAMGVFDLIGTTMSGWLSDRYDSRVLLFWYYGLRGLSLIYL
PHAFGIDFFGLPLFAVFYGLDWIATVPPTVRLATDVYGKDAAPVVFGWIVAGHQLGAAFAALGAGMLRASLGTYTVASMI
SGGLCIVGALIVLRINRGTARVSASAA

Sequences:

>Translated_427_residues
MNWAARRIGGRFHYGWLAAAVVFLILLAAAGTRATPSVLMVPLEHEFGWSRASISLAISVNIALYGLTGPFAAAAMQRFG
VRPTVLAALGVMGMGVALSSMMTATWQMVLVWGVMVGGATGVAALTLSATFVTRWFVARRGLVMGLLTASSATGQLVFLP
MLAAIAQRHGWRPVVLTVAVAAAIAVPLVALLLPERPSDVGLRPYGEPANAPRADDGAKRNPIAVAFGMLATASKTRDFW
LLFFSFFICGASTNGYVGTHLIAMCSDYGMTQVQGASLLAAMGVFDLIGTTMSGWLSDRYDSRVLLFWYYGLRGLSLIYL
PHAFGIDFFGLPLFAVFYGLDWIATVPPTVRLATDVYGKDAAPVVFGWIVAGHQLGAAFAALGAGMLRASLGTYTVASMI
SGGLCIVGALIVLRINRGTARVSASAA
>Mature_427_residues
MNWAARRIGGRFHYGWLAAAVVFLILLAAAGTRATPSVLMVPLEHEFGWSRASISLAISVNIALYGLTGPFAAAAMQRFG
VRPTVLAALGVMGMGVALSSMMTATWQMVLVWGVMVGGATGVAALTLSATFVTRWFVARRGLVMGLLTASSATGQLVFLP
MLAAIAQRHGWRPVVLTVAVAAAIAVPLVALLLPERPSDVGLRPYGEPANAPRADDGAKRNPIAVAFGMLATASKTRDFW
LLFFSFFICGASTNGYVGTHLIAMCSDYGMTQVQGASLLAAMGVFDLIGTTMSGWLSDRYDSRVLLFWYYGLRGLSLIYL
PHAFGIDFFGLPLFAVFYGLDWIATVPPTVRLATDVYGKDAAPVVFGWIVAGHQLGAAFAALGAGMLRASLGTYTVASMI
SGGLCIVGALIVLRINRGTARVSASAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Homo sapiens, GI42475555, Length=410, Percent_Identity=24.390243902439, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI291621700, Length=409, Percent_Identity=20.2933985330073, Blast_Score=66, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17550316, Length=189, Percent_Identity=31.7460317460317, Blast_Score=75, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 45026; Mature: 45026

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWAARRIGGRFHYGWLAAAVVFLILLAAAGTRATPSVLMVPLEHEFGWSRASISLAISV
CCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
NIALYGLTGPFAAAAMQRFGVRPTVLAALGVMGMGVALSSMMTATWQMVLVWGVMVGGAT
EEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GVAALTLSATFVTRWFVARRGLVMGLLTASSATGQLVFLPMLAAIAQRHGWRPVVLTVAV
HHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
AAAIAVPLVALLLPERPSDVGLRPYGEPANAPRADDGAKRNPIAVAFGMLATASKTRDFW
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHH
LLFFSFFICGASTNGYVGTHLIAMCSDYGMTQVQGASLLAAMGVFDLIGTTMSGWLSDRY
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
DSRVLLFWYYGLRGLSLIYLPHAFGIDFFGLPLFAVFYGLDWIATVPPTVRLATDVYGKD
CCEEEEEEEHHHHCCEEEEECHHHCCCHHHHHHHHHHHCCHHHCCCCCCEEEEHHHCCCC
AAPVVFGWIVAGHQLGAAFAALGAGMLRASLGTYTVASMISGGLCIVGALIVLRINRGTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCCC
RVSASAA
CEECCCC
>Mature Secondary Structure
MNWAARRIGGRFHYGWLAAAVVFLILLAAAGTRATPSVLMVPLEHEFGWSRASISLAISV
CCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
NIALYGLTGPFAAAAMQRFGVRPTVLAALGVMGMGVALSSMMTATWQMVLVWGVMVGGAT
EEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GVAALTLSATFVTRWFVARRGLVMGLLTASSATGQLVFLPMLAAIAQRHGWRPVVLTVAV
HHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
AAAIAVPLVALLLPERPSDVGLRPYGEPANAPRADDGAKRNPIAVAFGMLATASKTRDFW
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHH
LLFFSFFICGASTNGYVGTHLIAMCSDYGMTQVQGASLLAAMGVFDLIGTTMSGWLSDRY
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
DSRVLLFWYYGLRGLSLIYLPHAFGIDFFGLPLFAVFYGLDWIATVPPTVRLATDVYGKD
CCEEEEEEEHHHHCCEEEEECHHHCCCHHHHHHHHHHHCCHHHCCCCCCEEEEHHHCCCC
AAPVVFGWIVAGHQLGAAFAALGAGMLRASLGTYTVASMISGGLCIVGALIVLRINRGTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCCC
RVSASAA
CEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]