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The map label for this gene is exbD1 [H]

Identifier: 237813818

GI number: 237813818

Start: 3474435

End: 3474965

Strand: Reverse

Name: exbD1 [H]

Synonym: GBP346_A3596

Alternate gene names: 237813818

Gene position: 3474965-3474435 (Counterclockwise)

Preceding gene: 237813819

Following gene: 237813817

Centisome position: 84.78

GC content: 74.01

Gene sequence:

>531_bases
ATGGCATTCGGCGGACTCGATCATCAGCACACGTCGCAGCCGATGGCGGACATCAACATGACGCCGCTCATCGACGTGAT
GCTCGTGCTGCTCGTCATCTTCATCATCACCGCGCCGCTCTTGACGCATGCGATCCGGCTCGATTTGCCGAAGGTCGCGG
CCGCGCCCGCGCGCGAGACGCCGGAGACGATCACGGTGTCGATCGACGCGGCGGGCAAGCTGTACTGGAACGACGCGCCC
GTCGCGCCCGACGCGCTCGCCGCGCGGTTGCGCGACGCGGCGGCGGCAGGCCAGGACCCGGAGCTGCATCTGCGCGCCGC
GCGCGACACCCGCTACGACACGATCGCGCAGGTGATGGGCGCCGCGCAGCAGGCGGGCGTCGCGCGGATCGGCTTCGTCA
CCGACGCGCCCGCGCCGCCGGCCCGGCCGTCGCCGCCGCGCGGCGCACCGCCTTCGCTTTCGCCGCCGGCGTCGCCCCAG
GCGCAGCCGCAGCCACCGTCGCCGCCGCCGTCGCCCGCCGCGTCGCGTTGA

Upstream 100 bases:

>100_bases
GTGTTCGTCTGCGGCGAGCCGGCCGCCGCCGCGGCCGACGATGCGGCCACCGCGGCCTAGCCGGCCGCGTCGATCCGATA
CACCCGGCGAGGAGGGCGGC

Downstream 100 bases:

>100_bases
TCGGCGGTTCGCGGCCGCCCGGACGGCGTGGCCGGCCGGCGCGGACGGTATAATCGACGTTTTCCCCGCGCCGCCCCCGG
CCGCCGGGGAAGCGCGACTT

Product: transport energizing protein, ExbD/TolR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAP
VAPDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLSPPASPQ
AQPQPPSPPPSPAASR

Sequences:

>Translated_176_residues
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAP
VAPDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLSPPASPQ
AQPQPPSPPPSPAASR
>Mature_175_residues
AFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAPV
APDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLSPPASPQA
QPQPPSPPPSPAASR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=124, Percent_Identity=33.8709677419355, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 18312; Mature: 18181

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARET
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
PETITVSIDAAGKLYWNDAPVAPDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMG
CCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
AAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLSPPASPQAQPQPPSPPPSPAASR
HHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARET
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
PETITVSIDAAGKLYWNDAPVAPDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMG
CCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
AAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLSPPASPQAQPQPPSPPPSPAASR
HHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]