| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is phnK [H]
Identifier: 237813707
GI number: 237813707
Start: 3373701
End: 3374471
Strand: Reverse
Name: phnK [H]
Synonym: GBP346_A3484
Alternate gene names: 237813707
Gene position: 3374471-3373701 (Counterclockwise)
Preceding gene: 237813708
Following gene: 237813706
Centisome position: 82.33
GC content: 68.48
Gene sequence:
>771_bases ATGACGCCGCTTCTGAGCGCGCGCGGGCTGACGAAGCGTTTCGGCGGACGCAACGGTTTCGCGAACGCGAGCTTCGATCT GTATCCGGGGGAAGTGCTGTGCATCGTCGGCGAATCGGGCTCCGGCAAGACGACGTTGCTGAACGTGCTGTCGCTGCAAA CGCAGGCGGACGCGGGCGCGCTGCGCTACACGGGCGGCGGCGGCGAGCGTATCGATCTGTTCGCGCTCGACGAGCCGCAG CGGCGCGCGTTGATGCGCACCGAGTGGGGCTTCGTCACGCAGAATCCGCGCGACGGGCTGCGCGGCGGCGTATCGGCGGG CGCGAACATCGGGGAGCCGCTGATGGCCGTCGGCGCGCGCCATTACGGGCGGCTGCGCGAGACGGCCGTCGACTGGATGG CGCGCGTCGAGCTCGATCCCGCGCGGATCGACGATCTGCCGTCGACGTTCTCGGGCGGCATGCAGCAGCGGCTGCAGATC GCGCGCAATCTGGTGATCGGGCCGCGCCTCGTATTCATGGACGAGCCGACCGCCGGCCTCGACGTATCGGTGCAGGCGCG CCTGCTCGACCTGTTGCGCGCGCTCACGTCGACGCTCGCGCTGTCGATGCTGATCGTCACGCACGATATCGGTGTGGCGC GGCTGCTCGCGCATCGGCTGATGGTGATGCAGCGCGGCGAGATCGTCGAGGCGGGGCTGACCGATCAGGTGCTCGACGAT CCGCAACATCCGTACACGCAAATGCTCGTGTCGTCCGTTCTACCGGTATGA
Upstream 100 bases:
>100_bases GCGCGCAGGCGCGCGCCGACGGCGGCGATGAGGGCAACGGCGGCGGCGACGGGGAGATGCCCGCGCCGCTCGCGGCCGAA CAGCCGCTGGGAGAGACGAC
Downstream 100 bases:
>100_bases GGTTCGGCATGCAAACCATCGAATCGTCCCGCCGCGCCTGCGATCACGATCACGCCCGCGCGTTCGCCGGCAACGCGGCG CTGATGCTGCGCGCGGTCGG
Product: phosphonate C-P lyase system protein PhnK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MTPLLSARGLTKRFGGRNGFANASFDLYPGEVLCIVGESGSGKTTLLNVLSLQTQADAGALRYTGGGGERIDLFALDEPQ RRALMRTEWGFVTQNPRDGLRGGVSAGANIGEPLMAVGARHYGRLRETAVDWMARVELDPARIDDLPSTFSGGMQQRLQI ARNLVIGPRLVFMDEPTAGLDVSVQARLLDLLRALTSTLALSMLIVTHDIGVARLLAHRLMVMQRGEIVEAGLTDQVLDD PQHPYTQMLVSSVLPV
Sequences:
>Translated_256_residues MTPLLSARGLTKRFGGRNGFANASFDLYPGEVLCIVGESGSGKTTLLNVLSLQTQADAGALRYTGGGGERIDLFALDEPQ RRALMRTEWGFVTQNPRDGLRGGVSAGANIGEPLMAVGARHYGRLRETAVDWMARVELDPARIDDLPSTFSGGMQQRLQI ARNLVIGPRLVFMDEPTAGLDVSVQARLLDLLRALTSTLALSMLIVTHDIGVARLLAHRLMVMQRGEIVEAGLTDQVLDD PQHPYTQMLVSSVLPV >Mature_255_residues TPLLSARGLTKRFGGRNGFANASFDLYPGEVLCIVGESGSGKTTLLNVLSLQTQADAGALRYTGGGGERIDLFALDEPQR RALMRTEWGFVTQNPRDGLRGGVSAGANIGEPLMAVGARHYGRLRETAVDWMARVELDPARIDDLPSTFSGGMQQRLQIA RNLVIGPRLVFMDEPTAGLDVSVQARLLDLLRALTSTLALSMLIVTHDIGVARLLAHRLMVMQRGEIVEAGLTDQVLDDP QHPYTQMLVSSVLPV
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4107
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=241, Percent_Identity=26.1410788381743, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI48994997, Length=252, Percent_Identity=65.0793650793651, Blast_Score=320, Evalue=4e-89, Organism=Escherichia coli, GI1789962, Length=261, Percent_Identity=38.6973180076628, Blast_Score=164, Evalue=6e-42, Organism=Escherichia coli, GI145693107, Length=263, Percent_Identity=35.7414448669202, Blast_Score=150, Evalue=8e-38, Organism=Escherichia coli, GI1787500, Length=231, Percent_Identity=35.4978354978355, Blast_Score=140, Evalue=7e-35, Organism=Escherichia coli, GI1789963, Length=260, Percent_Identity=32.6923076923077, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI1788506, Length=249, Percent_Identity=33.3333333333333, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1787758, Length=224, Percent_Identity=36.6071428571429, Blast_Score=129, Evalue=1e-31, Organism=Escherichia coli, GI1788225, Length=259, Percent_Identity=33.976833976834, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI48994883, Length=260, Percent_Identity=31.9230769230769, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787029, Length=252, Percent_Identity=30.952380952381, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789672, Length=252, Percent_Identity=28.968253968254, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=29.9242424242424, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787759, Length=257, Percent_Identity=31.9066147859922, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787089, Length=226, Percent_Identity=32.3008849557522, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787105, Length=233, Percent_Identity=33.9055793991416, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1789032, Length=249, Percent_Identity=27.710843373494, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1789890, Length=237, Percent_Identity=35.0210970464135, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1786872, Length=251, Percent_Identity=29.4820717131474, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1789891, Length=255, Percent_Identity=30.5882352941176, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI87081791, Length=264, Percent_Identity=27.2727272727273, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1787548, Length=266, Percent_Identity=27.4436090225564, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI87081834, Length=221, Percent_Identity=32.579185520362, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1788761, Length=236, Percent_Identity=30.0847457627119, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1788644, Length=255, Percent_Identity=29.8039215686275, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786398, Length=255, Percent_Identity=26.2745098039216, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI87081709, Length=244, Percent_Identity=27.0491803278689, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788450, Length=241, Percent_Identity=28.6307053941909, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787370, Length=254, Percent_Identity=24.8031496062992, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1787792, Length=249, Percent_Identity=28.1124497991968, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1790534, Length=205, Percent_Identity=34.1463414634146, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786703, Length=184, Percent_Identity=33.695652173913, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789873, Length=215, Percent_Identity=27.4418604651163, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1790162, Length=260, Percent_Identity=27.3076923076923, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786563, Length=228, Percent_Identity=29.8245614035088, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1787712, Length=252, Percent_Identity=26.1904761904762, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786319, Length=239, Percent_Identity=25.1046025104602, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48995001, Length=251, Percent_Identity=27.4900398406374, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789991, Length=234, Percent_Identity=28.2051282051282, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786803, Length=239, Percent_Identity=29.7071129707113, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790190, Length=231, Percent_Identity=25.5411255411255, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082267, Length=256, Percent_Identity=28.125, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786253, Length=224, Percent_Identity=27.2321428571429, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790544, Length=247, Percent_Identity=25.5060728744939, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786345, Length=239, Percent_Identity=26.7782426778243, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787164, Length=231, Percent_Identity=26.8398268398268, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789586, Length=257, Percent_Identity=26.0700389105058, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI87082268, Length=238, Percent_Identity=26.4705882352941, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1789593, Length=241, Percent_Identity=25.7261410788382, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1790739, Length=238, Percent_Identity=26.0504201680672, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788053, Length=211, Percent_Identity=29.3838862559242, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193211015, Length=217, Percent_Identity=29.4930875576037, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71996809, Length=217, Percent_Identity=29.4930875576037, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193211017, Length=217, Percent_Identity=29.4930875576037, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193208177, Length=238, Percent_Identity=26.0504201680672, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI25146777, Length=219, Percent_Identity=27.3972602739726, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17565938, Length=238, Percent_Identity=24.7899159663866, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71984940, Length=225, Percent_Identity=26.2222222222222, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=231, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=5e-12, Organism=Drosophila melanogaster, GI24641565, Length=228, Percent_Identity=26.7543859649123, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012700 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 27705; Mature: 27574
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLLSARGLTKRFGGRNGFANASFDLYPGEVLCIVGESGSGKTTLLNVLSLQTQADAGA CCCCCCCCCHHHHCCCCCCCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC LRYTGGGGERIDLFALDEPQRRALMRTEWGFVTQNPRDGLRGGVSAGANIGEPLMAVGAR EEEECCCCCEEEEEECCCHHHHHHHHHCCCCEECCCHHHHHCCCCCCCCCCHHHHHHHHH HYGRLRETAVDWMARVELDPARIDDLPSTFSGGMQQRLQIARNLVIGPRLVFMDEPTAGL HHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC DVSVQARLLDLLRALTSTLALSMLIVTHDIGVARLLAHRLMVMQRGEIVEAGLTDQVLDD CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCHHHHCC PQHPYTQMLVSSVLPV CCCHHHHHHHHHHCCC >Mature Secondary Structure TPLLSARGLTKRFGGRNGFANASFDLYPGEVLCIVGESGSGKTTLLNVLSLQTQADAGA CCCCCCCCHHHHCCCCCCCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC LRYTGGGGERIDLFALDEPQRRALMRTEWGFVTQNPRDGLRGGVSAGANIGEPLMAVGAR EEEECCCCCEEEEEECCCHHHHHHHHHCCCCEECCCHHHHHCCCCCCCCCCHHHHHHHHH HYGRLRETAVDWMARVELDPARIDDLPSTFSGGMQQRLQIARNLVIGPRLVFMDEPTAGL HHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC DVSVQARLLDLLRALTSTLALSMLIVTHDIGVARLLAHRLMVMQRGEIVEAGLTDQVLDD CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCHHHHCC PQHPYTQMLVSSVLPV CCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]