| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is phnL [H]
Identifier: 237813706
GI number: 237813706
Start: 3372895
End: 3373692
Strand: Reverse
Name: phnL [H]
Synonym: GBP346_A3483
Alternate gene names: 237813706
Gene position: 3373692-3372895 (Counterclockwise)
Preceding gene: 237813707
Following gene: 237813705
Centisome position: 82.31
GC content: 72.68
Gene sequence:
>798_bases ATGCAAACCATCGAATCGTCCCGCCGCGCCTGCGATCACGATCACGCCCGCGCGTTCGCCGGCAACGCGGCGCTGATGCT GCGCGCGGTCGGCGTCGGCAAGACGTTCACGCTGCATGCGCACGGCGGCATGACGATCGACGCGCTCGAGAACGTGTCGC TCGATGTCGAAGCGGGCGAGTGCGTCGCGCTCACGGGGCCGTCCGGCGCGGGCAAGAGCACGCTGCTGCGGTGCCTGTAC GGCAACTATCTCGCGAACCGCGGCACGATCGCGGTGCGCGTCGGCACGCGCGCGGCGGAGCACGTCGTGCTGACGGCGTC CGAGCCGCACGAGGTGATCGCGCTGCGGCGCGACGTGATCGGCTACGTCAGCCAGTTCCTGCGGGCGATTCCGCGGGTGC CGGCGCTCGCGCTCGTCGCCGCGCCGCTCGTCGCGCGCGGCATGCCCGAAGGCGATGCGGCCGATCGCGCGGCGCATCTG CTCGCGCGCCTGAACGTGCCGCGCCGGCTGTGGACGCTCGCGCCCGCGACGTTTTCGGGCGGCGAGCAGCAGCGCGTGAA CATCGCGCGCGGGCTGATCGCCGAGCATCCGGTGCTGCTGCTCGACGAGCCGACGGCGTCGCTCGACGCGGAGAATCGCG ACGTCGTCGCCGAGCTGATCGGCGACGTGCGCCGGCGCGGCGCGGCGATCGTCGGCATCTTTCACGACGAAGCGACGCGC GAGCGCGTCGCGACGCGCTGTTTCCCGCTGCGCCCGCCGTCGCGCGCGCGGCTGCCCTTTGACGAAGTGAACGCTTAG
Upstream 100 bases:
>100_bases AGATCGTCGAGGCGGGGCTGACCGATCAGGTGCTCGACGATCCGCAACATCCGTACACGCAAATGCTCGTGTCGTCCGTT CTACCGGTATGAGGTTCGGC
Downstream 100 bases:
>100_bases CGGAGCGAACGATGTTGATCAGCAATGCGCGCGTCGTCACGCGCGACGACGTTTTCATCGGCACCGTGCAGATCGACGGC GAATCGATCCGCGCGGTGTC
Product: phosphonate C-P lyase system protein PhnL
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MQTIESSRRACDHDHARAFAGNAALMLRAVGVGKTFTLHAHGGMTIDALENVSLDVEAGECVALTGPSGAGKSTLLRCLY GNYLANRGTIAVRVGTRAAEHVVLTASEPHEVIALRRDVIGYVSQFLRAIPRVPALALVAAPLVARGMPEGDAADRAAHL LARLNVPRRLWTLAPATFSGGEQQRVNIARGLIAEHPVLLLDEPTASLDAENRDVVAELIGDVRRRGAAIVGIFHDEATR ERVATRCFPLRPPSRARLPFDEVNA
Sequences:
>Translated_265_residues MQTIESSRRACDHDHARAFAGNAALMLRAVGVGKTFTLHAHGGMTIDALENVSLDVEAGECVALTGPSGAGKSTLLRCLY GNYLANRGTIAVRVGTRAAEHVVLTASEPHEVIALRRDVIGYVSQFLRAIPRVPALALVAAPLVARGMPEGDAADRAAHL LARLNVPRRLWTLAPATFSGGEQQRVNIARGLIAEHPVLLLDEPTASLDAENRDVVAELIGDVRRRGAAIVGIFHDEATR ERVATRCFPLRPPSRARLPFDEVNA >Mature_265_residues MQTIESSRRACDHDHARAFAGNAALMLRAVGVGKTFTLHAHGGMTIDALENVSLDVEAGECVALTGPSGAGKSTLLRCLY GNYLANRGTIAVRVGTRAAEHVVLTASEPHEVIALRRDVIGYVSQFLRAIPRVPALALVAAPLVARGMPEGDAADRAAHL LARLNVPRRLWTLAPATFSGGEQQRVNIARGLIAEHPVLLLDEPTASLDAENRDVVAELIGDVRRRGAAIVGIFHDEATR ERVATRCFPLRPPSRARLPFDEVNA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4778
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=206, Percent_Identity=29.126213592233, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI30795238, Length=206, Percent_Identity=29.126213592233, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI105990541, Length=231, Percent_Identity=29.004329004329, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI116734710, Length=205, Percent_Identity=28.2926829268293, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI42741659, Length=205, Percent_Identity=29.7560975609756, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI150417984, Length=208, Percent_Identity=29.8076923076923, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961250, Length=206, Percent_Identity=30.0970873786408, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=206, Percent_Identity=30.0970873786408, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI21536376, Length=199, Percent_Identity=26.1306532663317, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI9961252, Length=206, Percent_Identity=30.0970873786408, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1790534, Length=225, Percent_Identity=56, Blast_Score=246, Evalue=1e-66, Organism=Escherichia coli, GI1787029, Length=209, Percent_Identity=34.9282296650718, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=34.2995169082126, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1787105, Length=225, Percent_Identity=34.2222222222222, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1789672, Length=200, Percent_Identity=34, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786398, Length=220, Percent_Identity=33.1818181818182, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1786703, Length=209, Percent_Identity=35.4066985645933, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787089, Length=202, Percent_Identity=36.1386138613861, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1788225, Length=187, Percent_Identity=35.8288770053476, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1790544, Length=242, Percent_Identity=32.2314049586777, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI145693107, Length=207, Percent_Identity=35.2657004830918, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787500, Length=208, Percent_Identity=29.3269230769231, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789962, Length=228, Percent_Identity=29.3859649122807, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788644, Length=211, Percent_Identity=32.2274881516588, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1789873, Length=203, Percent_Identity=33.0049261083744, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI48995001, Length=233, Percent_Identity=30.9012875536481, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI87081791, Length=200, Percent_Identity=32, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=30.7339449541284, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=31.6742081447964, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789991, Length=220, Percent_Identity=29.0909090909091, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786253, Length=199, Percent_Identity=32.1608040201005, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788761, Length=203, Percent_Identity=30.5418719211823, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1790739, Length=199, Percent_Identity=31.1557788944724, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789864, Length=217, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786872, Length=184, Percent_Identity=29.8913043478261, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI48994883, Length=200, Percent_Identity=29.5, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1786319, Length=193, Percent_Identity=30.0518134715026, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1788450, Length=190, Percent_Identity=32.1052631578947, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790162, Length=190, Percent_Identity=28.4210526315789, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI48994997, Length=208, Percent_Identity=30.2884615384615, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787712, Length=197, Percent_Identity=32.48730964467, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788210, Length=212, Percent_Identity=28.3018867924528, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787758, Length=221, Percent_Identity=27.1493212669683, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786803, Length=226, Percent_Identity=30.0884955752212, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87081709, Length=178, Percent_Identity=31.4606741573034, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790467, Length=202, Percent_Identity=30.1980198019802, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788165, Length=195, Percent_Identity=29.2307692307692, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787143, Length=212, Percent_Identity=28.7735849056604, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1790190, Length=193, Percent_Identity=26.9430051813472, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1787370, Length=209, Percent_Identity=28.7081339712919, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787112, Length=200, Percent_Identity=28.5, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787759, Length=214, Percent_Identity=29.4392523364486, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=26.7942583732057, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17558664, Length=194, Percent_Identity=32.4742268041237, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115533592, Length=219, Percent_Identity=32.4200913242009, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17569145, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17569143, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17541710, Length=201, Percent_Identity=28.8557213930348, Blast_Score=64, Evalue=5e-11, Organism=Drosophila melanogaster, GI19920532, Length=205, Percent_Identity=29.7560975609756, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24580930, Length=205, Percent_Identity=29.7560975609756, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI85725262, Length=186, Percent_Identity=29.0322580645161, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI21357907, Length=189, Percent_Identity=34.9206349206349, Blast_Score=70, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012701 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28404; Mature: 28404
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTIESSRRACDHDHARAFAGNAALMLRAVGVGKTFTLHAHGGMTIDALENVSLDVEAGE CCCHHHHHHHCCCHHHHHHCCCCEEEEEEECCCCEEEEEECCCEEEEHHCCCEEEECCCC CVALTGPSGAGKSTLLRCLYGNYLANRGTIAVRVGTRAAEHVVLTASEPHEVIALRRDVI EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHH GYVSQFLRAIPRVPALALVAAPLVARGMPEGDAADRAAHLLARLNVPRRLWTLAPATFSG HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHEECCCCCCC GEQQRVNIARGLIAEHPVLLLDEPTASLDAENRDVVAELIGDVRRRGAAIVGIFHDEATR CCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHH ERVATRCFPLRPPSRARLPFDEVNA HHHHHHHCCCCCCCCCCCCHHHCCC >Mature Secondary Structure MQTIESSRRACDHDHARAFAGNAALMLRAVGVGKTFTLHAHGGMTIDALENVSLDVEAGE CCCHHHHHHHCCCHHHHHHCCCCEEEEEEECCCCEEEEEECCCEEEEHHCCCEEEECCCC CVALTGPSGAGKSTLLRCLYGNYLANRGTIAVRVGTRAAEHVVLTASEPHEVIALRRDVI EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHH GYVSQFLRAIPRVPALALVAAPLVARGMPEGDAADRAAHLLARLNVPRRLWTLAPATFSG HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHEECCCCCCC GEQQRVNIARGLIAEHPVLLLDEPTASLDAENRDVVAELIGDVRRRGAAIVGIFHDEATR CCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHH ERVATRCFPLRPPSRARLPFDEVNA HHHHHHHCCCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]