BacMap

Definition	Burkholderia pseudomallei MSHR346 chromosome I, complete genome.
Accession	NC_012695
Length	4,098,576

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The map label for this gene is urtD [H]

Identifier: 237813474

GI number: 237813474

Start: 3137685

End: 3138548

Strand: Direct

Name: urtD [H]

Synonym: GBP346_A3250

Alternate gene names: 237813474

Gene position: 3137685-3138548 (Clockwise)

Preceding gene: 237813473

Following gene: 237813475

Centisome position: 76.56

GC content: 68.29

Gene sequence:

>864_bases
ATGAACGAGAACACGATGATTCGCGAGCCCGCGCAGCCGGACGGCGCCGACCGGCTCGCCGTCAGCGGCGCGGCCGGGAT
GTCGCACGTCGTCACGCCCGGCGCGATCGACACGTCGCACGGCACGATCCTCTATCTCGACGACATCGAAGTGAGCTTCG
ACGGCTTTCGCGCGCTGAAGAAGCTGTCGCTGTCGATCGACGTCGGCGAGCTGCGCTGCGTGATCGGCCCGAACGGCGCC
GGCAAGACGACGATGATGGACGTGATCACCGGCAAGACGCGGCCCGATTCGGGCCACGCGTTCCTCGGCCAGACACTCGA
CCTCACGCGCATGAACGAGCCGCAGATCGCACGCGCGGGCATCGGCCGCAAGTTTCAGAAGCCGACCGTGTTCGAGCAGC
ATCCGGTATGGGAGAACCTCGAGCTCGCGATGGCCGCCGACAAGCGCTGGTTCGCGTCGCTGCGCGCGCGGCTCGACCGA
GCGGCGCAGGCGCGGATCGAGCAGACGCTCGCGCTGATCCGGCTCGAGGACAGCGCGTACCGGCTCGCGGGCGAGCTGTC
GCACGGGCAGAAGCAGCGGCTCGAGATCGGCATGCTGCTGATGCAGCGCCCCGCGCTCTTGCTGCTCGACGAGCCCGCGG
CCGGCATGACCGACCACGAGACGATGGAGCTCGCCGAGCTGCTGAACACGCTGCGCGGCACGTGCTCGATGATGGTCGTC
GAGCACGACATGGAATTCGTCGCGGCGCTCGCGGGCGACGCGGGACGCGTGACCGTGATGGCGGAAGGCGCGGTGCTCGC
GCAAGGCACGCTCGATCAGGTGAAGCGCGACGAAGCGGTGATCGAGTCTTATCTCGGACGATGA

Upstream 100 bases:

>100_bases
GGCTGTTCTTCCTCGGCCTCATCTTCGTGCTCGTGCCGCTCGTGCTGCCGCGCGGCATCATGGGCCTCGTCGAAACCGTC
ATGCGCAAGGCCACGTCACG

Downstream 100 bases:

>100_bases
TGCGATGCTGACAATCGAATCGCTGAACCAGTACTACGGCGGCAGCCATATCCTGCGCGACGTGAGCCTCACCGCCGAAA
CCGGCCGGCTCACCGTGCTG

Product: urea ABC transporter, ATP-binding protein UrtD

Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]

Alternate protein names: LIV-I protein G [H]

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MNENTMIREPAQPDGADRLAVSGAAGMSHVVTPGAIDTSHGTILYLDDIEVSFDGFRALKKLSLSIDVGELRCVIGPNGA
GKTTMMDVITGKTRPDSGHAFLGQTLDLTRMNEPQIARAGIGRKFQKPTVFEQHPVWENLELAMAADKRWFASLRARLDR
AAQARIEQTLALIRLEDSAYRLAGELSHGQKQRLEIGMLLMQRPALLLLDEPAAGMTDHETMELAELLNTLRGTCSMMVV
EHDMEFVAALAGDAGRVTVMAEGAVLAQGTLDQVKRDEAVIESYLGR

Sequences:

>Translated_287_residues
MNENTMIREPAQPDGADRLAVSGAAGMSHVVTPGAIDTSHGTILYLDDIEVSFDGFRALKKLSLSIDVGELRCVIGPNGA
GKTTMMDVITGKTRPDSGHAFLGQTLDLTRMNEPQIARAGIGRKFQKPTVFEQHPVWENLELAMAADKRWFASLRARLDR
AAQARIEQTLALIRLEDSAYRLAGELSHGQKQRLEIGMLLMQRPALLLLDEPAAGMTDHETMELAELLNTLRGTCSMMVV
EHDMEFVAALAGDAGRVTVMAEGAVLAQGTLDQVKRDEAVIESYLGR
>Mature_287_residues
MNENTMIREPAQPDGADRLAVSGAAGMSHVVTPGAIDTSHGTILYLDDIEVSFDGFRALKKLSLSIDVGELRCVIGPNGA
GKTTMMDVITGKTRPDSGHAFLGQTLDLTRMNEPQIARAGIGRKFQKPTVFEQHPVWENLELAMAADKRWFASLRARLDR
AAQARIEQTLALIRLEDSAYRLAGELSHGQKQRLEIGMLLMQRPALLLLDEPAAGMTDHETMELAELLNTLRGTCSMMVV
EHDMEFVAALAGDAGRVTVMAEGAVLAQGTLDQVKRDEAVIESYLGR

Specific function: Component of the leucine-specific transport system [H]

COG id: COG4674

COG function: function code R; Uncharacterized ABC-type transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI150417984, Length=245, Percent_Identity=31.8367346938775, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI31657092, Length=225, Percent_Identity=27.1111111111111, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI116734710, Length=216, Percent_Identity=28.2407407407407, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI21536376, Length=230, Percent_Identity=27.3913043478261, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI27881501, Length=220, Percent_Identity=25.9090909090909, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI30795238, Length=220, Percent_Identity=25.9090909090909, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI27436953, Length=219, Percent_Identity=26.027397260274, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI27477115, Length=213, Percent_Identity=26.7605633802817, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI45446740, Length=233, Percent_Identity=28.3261802575107, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI47078218, Length=233, Percent_Identity=28.3261802575107, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI27262624, Length=227, Percent_Identity=24.6696035242291, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27262626, Length=227, Percent_Identity=24.6696035242291, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI153792144, Length=159, Percent_Identity=28.3018867924528, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI105990541, Length=216, Percent_Identity=25.462962962963, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI11967971, Length=179, Percent_Identity=29.0502793296089, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1789864, Length=258, Percent_Identity=36.046511627907, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI87081791, Length=236, Percent_Identity=29.2372881355932, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790739, Length=235, Percent_Identity=29.7872340425532, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788761, Length=236, Percent_Identity=31.7796610169492, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790190, Length=248, Percent_Identity=30.241935483871, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082268, Length=248, Percent_Identity=31.0483870967742, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789593, Length=236, Percent_Identity=28.8135593220339, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790525, Length=233, Percent_Identity=28.3261802575107, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081782, Length=229, Percent_Identity=31.0043668122271, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787370, Length=235, Percent_Identity=28.936170212766, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790162, Length=204, Percent_Identity=28.921568627451, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=29.8701298701299, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786398, Length=222, Percent_Identity=28.8288288288288, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=28.82096069869, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789672, Length=241, Percent_Identity=26.5560165975104, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1786253, Length=231, Percent_Identity=26.8398268398268, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788897, Length=220, Percent_Identity=29.0909090909091, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787792, Length=245, Percent_Identity=25.7142857142857, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790467, Length=207, Percent_Identity=30.9178743961353, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786345, Length=252, Percent_Identity=26.984126984127, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI87081709, Length=245, Percent_Identity=24.4897959183673, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082267, Length=250, Percent_Identity=27.6, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994943, Length=240, Percent_Identity=28.3333333333333, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787029, Length=227, Percent_Identity=25.9911894273128, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788472, Length=248, Percent_Identity=26.2096774193548, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787105, Length=234, Percent_Identity=28.2051282051282, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790544, Length=245, Percent_Identity=25.7142857142857, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788210, Length=239, Percent_Identity=26.7782426778243, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789991, Length=214, Percent_Identity=25.7009345794392, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786803, Length=241, Percent_Identity=26.1410788381743, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789873, Length=197, Percent_Identity=25.8883248730964, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081834, Length=218, Percent_Identity=27.0642201834862, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787972, Length=241, Percent_Identity=27.8008298755187, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787164, Length=236, Percent_Identity=27.1186440677966, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786563, Length=225, Percent_Identity=28.8888888888889, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994997, Length=247, Percent_Identity=27.9352226720648, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786872, Length=235, Percent_Identity=26.3829787234043, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI2367384, Length=222, Percent_Identity=27.9279279279279, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693107, Length=269, Percent_Identity=25.6505576208178, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789586, Length=229, Percent_Identity=27.0742358078603, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI48995001, Length=229, Percent_Identity=25.764192139738, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787500, Length=265, Percent_Identity=24.9056603773585, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786319, Length=163, Percent_Identity=30.6748466257669, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789032, Length=229, Percent_Identity=25.764192139738, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788506, Length=255, Percent_Identity=26.6666666666667, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787758, Length=252, Percent_Identity=25, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=236, Percent_Identity=30.5084745762712, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17565586, Length=214, Percent_Identity=32.7102803738318, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI115533608, Length=277, Percent_Identity=25.2707581227437, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71983510, Length=248, Percent_Identity=26.6129032258064, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=248, Percent_Identity=26.6129032258064, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983523, Length=248, Percent_Identity=26.6129032258064, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115533592, Length=238, Percent_Identity=25.6302521008403, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=230, Percent_Identity=23.0434782608696, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=220, Percent_Identity=25.4545454545455, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221512771, Length=234, Percent_Identity=26.4957264957265, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24643674, Length=227, Percent_Identity=27.3127753303965, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28574150, Length=219, Percent_Identity=28.310502283105, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI116007328, Length=219, Percent_Identity=28.310502283105, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24666092, Length=248, Percent_Identity=23.7903225806452, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161076682, Length=261, Percent_Identity=26.4367816091954, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI161076684, Length=262, Percent_Identity=26.3358778625954, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24581617, Length=262, Percent_Identity=26.3358778625954, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24581615, Length=262, Percent_Identity=26.3358778625954, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI85724858, Length=209, Percent_Identity=28.2296650717703, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI85724856, Length=209, Percent_Identity=28.2296650717703, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24580547, Length=209, Percent_Identity=28.2296650717703, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24580551, Length=209, Percent_Identity=28.2296650717703, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24580549, Length=209, Percent_Identity=28.2296650717703, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24580545, Length=209, Percent_Identity=28.2296650717703, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 31281; Mature: 31281

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNENTMIREPAQPDGADRLAVSGAAGMSHVVTPGAIDTSHGTILYLDDIEVSFDGFRALK
CCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCEECCCCEEEEEECEEECHHHHHHHH
KLSLSIDVGELRCVIGPNGAGKTTMMDVITGKTRPDSGHAFLGQTLDLTRMNEPQIARAG
HHHEEEECCCEEEEECCCCCCCCEEEHHHCCCCCCCCCCEECCCCEEEECCCCCCHHHHC
IGRKFQKPTVFEQHPVWENLELAMAADKRWFASLRARLDRAAQARIEQTLALIRLEDSAY
CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHH
RLAGELSHGQKQRLEIGMLLMQRPALLLLDEPAAGMTDHETMELAELLNTLRGTCSMMVV
HHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEE
EHDMEFVAALAGDAGRVTVMAEGAVLAQGTLDQVKRDEAVIESYLGR
HHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNENTMIREPAQPDGADRLAVSGAAGMSHVVTPGAIDTSHGTILYLDDIEVSFDGFRALK
CCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCEECCCCEEEEEECEEECHHHHHHHH
KLSLSIDVGELRCVIGPNGAGKTTMMDVITGKTRPDSGHAFLGQTLDLTRMNEPQIARAG
HHHEEEECCCEEEEECCCCCCCCEEEHHHCCCCCCCCCCEECCCCEEEECCCCCCHHHHC
IGRKFQKPTVFEQHPVWENLELAMAADKRWFASLRARLDRAAQARIEQTLALIRLEDSAY
CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHH
RLAGELSHGQKQRLEIGMLLMQRPALLLLDEPAAGMTDHETMELAELLNTLRGTCSMMVV
HHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEE
EHDMEFVAALAGDAGRVTVMAEGAVLAQGTLDQVKRDEAVIESYLGR
HHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]

Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]