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The map label for this gene is traC [H]

Identifier: 237813308

GI number: 237813308

Start: 2991850

End: 2994699

Strand: Reverse

Name: traC [H]

Synonym: GBP346_A3077

Alternate gene names: 237813308

Gene position: 2994699-2991850 (Counterclockwise)

Preceding gene: 237813309

Following gene: 237813301

Centisome position: 73.07

GC content: 64.98

Gene sequence:

>2850_bases
ATGTCCGAATTCGAGCGGGCGAGAGTCGCGCTCGGTTATGTCCCGCCTGACGACCGCGATACGTGGCGTCAGGTCGGGAT
GGCGGTCAAGGCCGAATTTGGCGAAGAGGGCTTCTCCCTCTGGAGCGAATGGAGCCAAGGCGCGCAAAGCTACAACGCAA
AAGACGCCCGCGACGTGTGGAAGTCATTCAAGGGCGGCAAGATCACGATCAATACGCTCTATCACCTTGCGAAGCGAGGC
GGCTTCGATCCGCGCGCGTATCGTGCAAAGCCGATCAAGCCAGCGGAGCGCGAACGGCAGTTGGCCGAACGCGCCGCCCG
TGAGGCGGCCGAGCTGACCGCGCTCGCGGAGAAACAGCAAGAGGCGGCAGCGCTTGCAGAGTCGATCTGGTCGGAGGCCA
AGCCCGCGCTGGCCGATCATCCCTATCTCGTTCGCAAGCGCATTCCGGCCGGTGATCTGCGCATCTATCGCGGCAATCTG
CGCATCGGCACGGCAGCGTGTGACGGTGCTTTGATCATCCCGGCGCGTGATGTGGACGGCAAGCTGTGGACCCTGGAATT
CATTCTGGAAGACGGGCAGAAACGCTATCTGCCGAACGGTCGCAAGTCGGGTTGCCTCTCGATGATCGGCGGCGCGGTGT
CGTCCACGCTGCTGATTGGCGAGGGGTATGCGACGTGCGCGACGCTCGCGGCCGCGACGAGCCATTCGGTCGCCGTCGCG
TTCGACGCAGGGAACTTGATGGCCGTCGCGACCGCGCTGCACGGCCGCTATCCGGATGCACGCATCGTCGTGTGCGCCGA
CGACGATCACACGACGAAGGGCAATCCGGGCGTGACGAAGGCGCGTGCGACGGCCAGCGCGGTAGGTGGCGCGGTTGTCG
TCCCCGACTTCGGGGCGGCTCGTCCCGCATCCAGCACAGACTTCAACGACTTGTCTGCGCACCGTGGCCCGGACGCCGTG
GCTGCTGCGGTGCGTGCTGCGCTTGCCGTGGGCGGCTCGTCGGTCGCTGACAATGGCAAGGCTGCCACGTCCGCGCCGAA
GCCCGCCAAACGCCCGAAAACCACGCAGACGGGCGACGGGCGGGCACGGTTTCGCGTCGATGGCCGGGGCGTCTGGTATG
AGGGCTACGACCGCGACGGAAACGACCTGCCGCCGCAATGGATCTGTGACCCGCTGGAGGTTGCGGCCGAGACACGTAAC
GAGGCGAATACGGAATGGGGCGTGTTGCTCCAGTTCGCGGACCGCGACGGCAACCCGAAGCGGTGGGCGATGCCCCGCCG
TATGCTGGCGGGCGACGGCGCGGAATATCGTGCGACCCTGCTGGATATGGGTCTGAACATCGATCCGTCATCGTCCGCGA
AACAGCGGCTCACGAGCTACATTCAGACAGCGCGCAGCGATCTACGCGCACGCTGTACGAGCCGAATCGGTTGGCATGGC
AACGCCTTCGTCTTGCCGGATCGGACCATCGGCGCGGGCGATGACCTGACGATTTTTCAGACGGACGGCAGTATCGAGAG
TCACTTCAAGCAAAGCGGAACGCTGGATGACTGGCGGCGCGAGTTGGCCGCGCTCTGCGTCGGCAATAGCCGCCTGATGT
TTTGCGTGTCGAGCGCCTTCGCTGGAACGTTGCTGCGGTTTTCCGGGCAGGCGTCGGGCGGTTTTCACCTGATGGGTAAC
AGCACGGTCGGCAAGACAACGGCATTGCGCGCCGCCGCATCGGTGTTCGGCGGGCGCGACTATATGCGGAGTTGGCGTGC
CACGTCGAACGCAATGGAATCGACAGCCGCGCAGCATAGCGACGGTCTGCTGATTCTCGATGAAATCGGGCAGGTCGAGC
CGAAAGAGGTGGGCGATATTGTCTACATGATCGGCAACGAGGCCGGTAAGGGGCGGGCGACCCGCAACGCGACGGCCAAG
CCGGTTTTGGTGTGGCGGCTGCTGTTTCTGTCGAGCGGGGAAAAGACGCTCGCGTCGATCATGGGCGAGGCTAGCAAGAC
GGCGAACGCCGGGCAGGATGTGCGTCTTGCGACGATTCCAGCGGACGCGGGGCGCGGCTACGGCATCTTCGAAGAGTTGC
ACGGCTTCGAGACCCCGAAGGATCTGGCGGACCATGTTGCCCGCGCCTCCGGTCAGTATTACGGCGTAGCCGCGATGGAG
TTTATCCGGCACGCGGCCGAGAACGCCGACCGAATGCGCGATACGGTAAGCGGCATGATCGCGGCGCTGGTGGCTGATTG
GGTGCCGCAAGGGTCGGACGGGCAGGTGTCGCGCGTTGCGCAGCGGTTCGCGCTCGTCGGCGTCGCCGGCGAGATTGCGA
GCGAGGCGGGTTGCACGGGATGGGGCGAGGGGCATGCGATCCAAGCAGCGCGCGCCTGTTTCAAGGCGTGGGTGCGGGAG
CGTGGCGGCGTGGGTAACGCTGAAGCAACAGCGATGATTCGGCAGGTTCGCGGCTTTCTGGAGGCGCACGGCGACGCGCG
CTTTACTTGGGTGCAGCGTGTCGATGATGACCATGCGGGCAAGACGATGCATCGGGCGGGGTTCAAACGGTCGCTGTCGG
CAGATCGTGCCGTGAATACGGATCGGGAATACTTGGCGGAGTACGGTGAGAAGATGACGGCTGCCGACGCCGAGCGCAGC
GCCACCGAATTTCTTGTGCTGACGGAGCCGTTTCGCAATGAGGTCTGTCGCGGCTTTGACCACCGTGCCGTTGCCCGCGT
GCTTGCTGACATGGGCGTATTGAGGCCGGAGAGCAACGGCCGGGCGGACTCCAAGGTCCGTGTCGGTGCGCACGGCCCGA
TGCGCGCGTACCGCATCCAGTCATCCATCTTCGCGCTCGATATCGGCTAG

Upstream 100 bases:

>100_bases
GCGCGGCATTCGATTCTGTACCTTGAGACGCGATTCGTAGTGCTAATCGGGTGTCCATCGATGCCGCGCGCCGAAACGGG
AAATTATGAGTAACACACAT

Downstream 100 bases:

>100_bases
TCGCCGCGCCCGTGCCGAGGTGTCGGCGCGGGCGTTCTTTTGCGCGGCAATTGCGAACCTGCGGCACTCAAAGTGACTTT
GGCGCGAGGTTCCAGAACAG

Product: primase C 2 (PriCT-2) family

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 949; Mature: 948

Protein sequence:

>949_residues
MSEFERARVALGYVPPDDRDTWRQVGMAVKAEFGEEGFSLWSEWSQGAQSYNAKDARDVWKSFKGGKITINTLYHLAKRG
GFDPRAYRAKPIKPAERERQLAERAAREAAELTALAEKQQEAAALAESIWSEAKPALADHPYLVRKRIPAGDLRIYRGNL
RIGTAACDGALIIPARDVDGKLWTLEFILEDGQKRYLPNGRKSGCLSMIGGAVSSTLLIGEGYATCATLAAATSHSVAVA
FDAGNLMAVATALHGRYPDARIVVCADDDHTTKGNPGVTKARATASAVGGAVVVPDFGAARPASSTDFNDLSAHRGPDAV
AAAVRAALAVGGSSVADNGKAATSAPKPAKRPKTTQTGDGRARFRVDGRGVWYEGYDRDGNDLPPQWICDPLEVAAETRN
EANTEWGVLLQFADRDGNPKRWAMPRRMLAGDGAEYRATLLDMGLNIDPSSSAKQRLTSYIQTARSDLRARCTSRIGWHG
NAFVLPDRTIGAGDDLTIFQTDGSIESHFKQSGTLDDWRRELAALCVGNSRLMFCVSSAFAGTLLRFSGQASGGFHLMGN
STVGKTTALRAAASVFGGRDYMRSWRATSNAMESTAAQHSDGLLILDEIGQVEPKEVGDIVYMIGNEAGKGRATRNATAK
PVLVWRLLFLSSGEKTLASIMGEASKTANAGQDVRLATIPADAGRGYGIFEELHGFETPKDLADHVARASGQYYGVAAME
FIRHAAENADRMRDTVSGMIAALVADWVPQGSDGQVSRVAQRFALVGVAGEIASEAGCTGWGEGHAIQAARACFKAWVRE
RGGVGNAEATAMIRQVRGFLEAHGDARFTWVQRVDDDHAGKTMHRAGFKRSLSADRAVNTDREYLAEYGEKMTAADAERS
ATEFLVLTEPFRNEVCRGFDHRAVARVLADMGVLRPESNGRADSKVRVGAHGPMRAYRIQSSIFALDIG

Sequences:

>Translated_949_residues
MSEFERARVALGYVPPDDRDTWRQVGMAVKAEFGEEGFSLWSEWSQGAQSYNAKDARDVWKSFKGGKITINTLYHLAKRG
GFDPRAYRAKPIKPAERERQLAERAAREAAELTALAEKQQEAAALAESIWSEAKPALADHPYLVRKRIPAGDLRIYRGNL
RIGTAACDGALIIPARDVDGKLWTLEFILEDGQKRYLPNGRKSGCLSMIGGAVSSTLLIGEGYATCATLAAATSHSVAVA
FDAGNLMAVATALHGRYPDARIVVCADDDHTTKGNPGVTKARATASAVGGAVVVPDFGAARPASSTDFNDLSAHRGPDAV
AAAVRAALAVGGSSVADNGKAATSAPKPAKRPKTTQTGDGRARFRVDGRGVWYEGYDRDGNDLPPQWICDPLEVAAETRN
EANTEWGVLLQFADRDGNPKRWAMPRRMLAGDGAEYRATLLDMGLNIDPSSSAKQRLTSYIQTARSDLRARCTSRIGWHG
NAFVLPDRTIGAGDDLTIFQTDGSIESHFKQSGTLDDWRRELAALCVGNSRLMFCVSSAFAGTLLRFSGQASGGFHLMGN
STVGKTTALRAAASVFGGRDYMRSWRATSNAMESTAAQHSDGLLILDEIGQVEPKEVGDIVYMIGNEAGKGRATRNATAK
PVLVWRLLFLSSGEKTLASIMGEASKTANAGQDVRLATIPADAGRGYGIFEELHGFETPKDLADHVARASGQYYGVAAME
FIRHAAENADRMRDTVSGMIAALVADWVPQGSDGQVSRVAQRFALVGVAGEIASEAGCTGWGEGHAIQAARACFKAWVRE
RGGVGNAEATAMIRQVRGFLEAHGDARFTWVQRVDDDHAGKTMHRAGFKRSLSADRAVNTDREYLAEYGEKMTAADAERS
ATEFLVLTEPFRNEVCRGFDHRAVARVLADMGVLRPESNGRADSKVRVGAHGPMRAYRIQSSIFALDIG
>Mature_948_residues
SEFERARVALGYVPPDDRDTWRQVGMAVKAEFGEEGFSLWSEWSQGAQSYNAKDARDVWKSFKGGKITINTLYHLAKRGG
FDPRAYRAKPIKPAERERQLAERAAREAAELTALAEKQQEAAALAESIWSEAKPALADHPYLVRKRIPAGDLRIYRGNLR
IGTAACDGALIIPARDVDGKLWTLEFILEDGQKRYLPNGRKSGCLSMIGGAVSSTLLIGEGYATCATLAAATSHSVAVAF
DAGNLMAVATALHGRYPDARIVVCADDDHTTKGNPGVTKARATASAVGGAVVVPDFGAARPASSTDFNDLSAHRGPDAVA
AAVRAALAVGGSSVADNGKAATSAPKPAKRPKTTQTGDGRARFRVDGRGVWYEGYDRDGNDLPPQWICDPLEVAAETRNE
ANTEWGVLLQFADRDGNPKRWAMPRRMLAGDGAEYRATLLDMGLNIDPSSSAKQRLTSYIQTARSDLRARCTSRIGWHGN
AFVLPDRTIGAGDDLTIFQTDGSIESHFKQSGTLDDWRRELAALCVGNSRLMFCVSSAFAGTLLRFSGQASGGFHLMGNS
TVGKTTALRAAASVFGGRDYMRSWRATSNAMESTAAQHSDGLLILDEIGQVEPKEVGDIVYMIGNEAGKGRATRNATAKP
VLVWRLLFLSSGEKTLASIMGEASKTANAGQDVRLATIPADAGRGYGIFEELHGFETPKDLADHVARASGQYYGVAAMEF
IRHAAENADRMRDTVSGMIAALVADWVPQGSDGQVSRVAQRFALVGVAGEIASEAGCTGWGEGHAIQAARACFKAWVRER
GGVGNAEATAMIRQVRGFLEAHGDARFTWVQRVDDDHAGKTMHRAGFKRSLSADRAVNTDREYLAEYGEKMTAADAERSA
TEFLVLTEPFRNEVCRGFDHRAVARVLADMGVLRPESNGRADSKVRVGAHGPMRAYRIQSSIFALDIG

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG5519

COG function: function code L; Superfamily II helicase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 102143; Mature: 102012

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFERARVALGYVPPDDRDTWRQVGMAVKAEFGEEGFSLWSEWSQGAQSYNAKDARDVW
CCCHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHH
KSFKGGKITINTLYHLAKRGGFDPRAYRAKPIKPAERERQLAERAAREAAELTALAEKQQ
HHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EAAALAESIWSEAKPALADHPYLVRKRIPAGDLRIYRGNLRIGTAACDGALIIPARDVDG
HHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEECCEEEEEEECCCEEEEECCCCCC
KLWTLEFILEDGQKRYLPNGRKSGCLSMIGGAVSSTLLIGEGYATCATLAAATSHSVAVA
CEEEEEEEHHCCCHHCCCCCCCCHHHHHHHHHHHCEEEEECCHHHHHHHHHHCCCCEEEE
FDAGNLMAVATALHGRYPDARIVVCADDDHTTKGNPGVTKARATASAVGGAVVVPDFGAA
ECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCC
RPASSTDFNDLSAHRGPDAVAAAVRAALAVGGSSVADNGKAATSAPKPAKRPKTTQTGDG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RARFRVDGRGVWYEGYDRDGNDLPPQWICDPLEVAAETRNEANTEWGVLLQFADRDGNPK
CEEEEECCCEEEEECCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
RWAMPRRMLAGDGAEYRATLLDMGLNIDPSSSAKQRLTSYIQTARSDLRARCTSRIGWHG
HHHCCHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NAFVLPDRTIGAGDDLTIFQTDGSIESHFKQSGTLDDWRRELAALCVGNSRLMFCVSSAF
CEEECCCCCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEHHHH
AGTLLRFSGQASGGFHLMGNSTVGKTTALRAAASVFGGRDYMRSWRATSNAMESTAAQHS
HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
DGLLILDEIGQVEPKEVGDIVYMIGNEAGKGRATRNATAKPVLVWRLLFLSSGEKTLASI
CCEEEECCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
MGEASKTANAGQDVRLATIPADAGRGYGIFEELHGFETPKDLADHVARASGQYYGVAAME
HHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCEEHHHHHH
FIRHAAENADRMRDTVSGMIAALVADWVPQGSDGQVSRVAQRFALVGVAGEIASEAGCTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
WGEGHAIQAARACFKAWVRERGGVGNAEATAMIRQVRGFLEAHGDARFTWVQRVDDDHAG
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
KTMHRAGFKRSLSADRAVNTDREYLAEYGEKMTAADAERSATEFLVLTEPFRNEVCRGFD
HHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCEEEEEECHHHHHHHCCCC
HRAVARVLADMGVLRPESNGRADSKVRVGAHGPMRAYRIQSSIFALDIG
HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHEEECCCEEEEECC
>Mature Secondary Structure 
SEFERARVALGYVPPDDRDTWRQVGMAVKAEFGEEGFSLWSEWSQGAQSYNAKDARDVW
CCHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHH
KSFKGGKITINTLYHLAKRGGFDPRAYRAKPIKPAERERQLAERAAREAAELTALAEKQQ
HHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EAAALAESIWSEAKPALADHPYLVRKRIPAGDLRIYRGNLRIGTAACDGALIIPARDVDG
HHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEECCEEEEEEECCCEEEEECCCCCC
KLWTLEFILEDGQKRYLPNGRKSGCLSMIGGAVSSTLLIGEGYATCATLAAATSHSVAVA
CEEEEEEEHHCCCHHCCCCCCCCHHHHHHHHHHHCEEEEECCHHHHHHHHHHCCCCEEEE
FDAGNLMAVATALHGRYPDARIVVCADDDHTTKGNPGVTKARATASAVGGAVVVPDFGAA
ECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCC
RPASSTDFNDLSAHRGPDAVAAAVRAALAVGGSSVADNGKAATSAPKPAKRPKTTQTGDG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RARFRVDGRGVWYEGYDRDGNDLPPQWICDPLEVAAETRNEANTEWGVLLQFADRDGNPK
CEEEEECCCEEEEECCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
RWAMPRRMLAGDGAEYRATLLDMGLNIDPSSSAKQRLTSYIQTARSDLRARCTSRIGWHG
HHHCCHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NAFVLPDRTIGAGDDLTIFQTDGSIESHFKQSGTLDDWRRELAALCVGNSRLMFCVSSAF
CEEECCCCCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEHHHH
AGTLLRFSGQASGGFHLMGNSTVGKTTALRAAASVFGGRDYMRSWRATSNAMESTAAQHS
HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
DGLLILDEIGQVEPKEVGDIVYMIGNEAGKGRATRNATAKPVLVWRLLFLSSGEKTLASI
CCEEEECCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
MGEASKTANAGQDVRLATIPADAGRGYGIFEELHGFETPKDLADHVARASGQYYGVAAME
HHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCEEHHHHHH
FIRHAAENADRMRDTVSGMIAALVADWVPQGSDGQVSRVAQRFALVGVAGEIASEAGCTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
WGEGHAIQAARACFKAWVRERGGVGNAEATAMIRQVRGFLEAHGDARFTWVQRVDDDHAG
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
KTMHRAGFKRSLSADRAVNTDREYLAEYGEKMTAADAERSATEFLVLTEPFRNEVCRGFD
HHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCEEEEEECHHHHHHHCCCC
HRAVARVLADMGVLRPESNGRADSKVRVGAHGPMRAYRIQSSIFALDIG
HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]