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The map label for this gene is intB [H]

Identifier: 237813306

GI number: 237813306

Start: 2989759

End: 2990997

Strand: Direct

Name: intB [H]

Synonym: GBP346_A3075

Alternate gene names: 237813306

Gene position: 2989759-2990997 (Clockwise)

Preceding gene: 237813305

Following gene: 237813307

Centisome position: 72.95

GC content: 61.82

Gene sequence:

>1239_bases
ATGGCACTGACTGATATGGCGATCCGCCGCGCCAAGCCCATGGAAAAACAGCAGAAGCTATTCGACAGCGGCGGACTGTT
CCTGCTTGTCACCCCAGCAGGGGGAAAGCGATGGGTCTTGAAATATCGATTCGGCGGCAGAGAGAAAAGCTTGGCGTTTG
GCACCTATCCGGAAGTTTCTCTGGTAGAAGCGCGCAAAAAGCGGGATGCCGCACGCGAAAAACTGGCGGCGAACATTGAT
CCAGGCGAAGCCAAGAAAGCCGAGAAGCGCACCCAGCGCCTCAACGCAGAAAACTCGTTCGAAGCCATCGCGCGCGAGTG
GCACGCGAAATACGCGCCCACATGGTCGGACAGTCACGGAAACCGCATCTTGCGCCGCCTAGAGGTGGACGCCTTCCCGT
GGATCGGCGGCAAGCCAATGGCGAACCTGACACCGCCTGACGTACTCGACATCCTGCGCCGGGTCGAGAAACGCGGAGCG
CTTGAAACCGCCCATCGCCTGCGCGGCAATGTCGGTCAGGTCTGTCGGTACGCCGTGGCCACCGGCCGGGCTGAGCGCGA
TGTAACATCCGACCTTCGCGGCGCGTTACCGCCCCCCGAAACAGAGCACTTCGCTGCCGTCACTGCGCCGAAGGAGCTCG
GCGAGCTGCTGCGCGCTATCGACAGCTATCGTGGCACCTTCCCCGTTCTTTGCGCACTCAGGCTCGCCCCACTAGTTTTT
CAACGCCCCGGCGAGCTGCGCGCCGCCGAGTGGGAGGAATTCGACCTAGACGCCGCCACGTGGGAAATTCCAAGCGCCCG
CATGAAGCGCCGGAAGAAAGACAAGGCGTCTGGCGGCGCGCACATCGTGCCGCTCGCCTCTCAAGCGATCAGCGTCCTGC
GTGAGCTACACCTACTCACCGGAAACGGCCGCTACCTGTTTTCTGGCGCGCGCTCGAAAACCCGTCCCATGTCCGATAAC
ACGGTCAATGCCGCGTTACGCCGACTCGGATATGACAGCAGCACCATGACGGGGCATGGTTTCCGCGCGACCGCCCGCAC
AATCATGGCGGAGCAACTTGGCATCCCGAAAGAGATTATCGAAGCCCAGCTTGCACACGCCGTGAAAGACCCTCTTGGGC
GCGCCTATGACCGCACTGTGTACCTCGCGCAGCGCGGAGAGATGATGCAGAAGTGGGCAAACTACCTCGATCGACTCAAA
GCGGGCGCGACCATCGTTCCAATTGCAGCCGCGCGATAG

Upstream 100 bases:

>100_bases
GAAACAACCCCAAACCGGGGGTTTTTCTGGGGGCTCTCCAGCCCTCCATCAATCGACAACCCCCAAACCCCATTCATCCT
CAGCCAGCAAAGGAACGCGC

Downstream 100 bases:

>100_bases
TACGACATCGACGCACTCACCACTTCATGCTCTCGCGCCCGCTTGCCCGCGATGGCGGCGTGCGCGAGGCGCTTTTTCGC
GCCGCTGAAGGCCGTGGGCG

Product: integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MALTDMAIRRAKPMEKQQKLFDSGGLFLLVTPAGGKRWVLKYRFGGREKSLAFGTYPEVSLVEARKKRDAAREKLAANID
PGEAKKAEKRTQRLNAENSFEAIAREWHAKYAPTWSDSHGNRILRRLEVDAFPWIGGKPMANLTPPDVLDILRRVEKRGA
LETAHRLRGNVGQVCRYAVATGRAERDVTSDLRGALPPPETEHFAAVTAPKELGELLRAIDSYRGTFPVLCALRLAPLVF
QRPGELRAAEWEEFDLDAATWEIPSARMKRRKKDKASGGAHIVPLASQAISVLRELHLLTGNGRYLFSGARSKTRPMSDN
TVNAALRRLGYDSSTMTGHGFRATARTIMAEQLGIPKEIIEAQLAHAVKDPLGRAYDRTVYLAQRGEMMQKWANYLDRLK
AGATIVPIAAAR

Sequences:

>Translated_412_residues
MALTDMAIRRAKPMEKQQKLFDSGGLFLLVTPAGGKRWVLKYRFGGREKSLAFGTYPEVSLVEARKKRDAAREKLAANID
PGEAKKAEKRTQRLNAENSFEAIAREWHAKYAPTWSDSHGNRILRRLEVDAFPWIGGKPMANLTPPDVLDILRRVEKRGA
LETAHRLRGNVGQVCRYAVATGRAERDVTSDLRGALPPPETEHFAAVTAPKELGELLRAIDSYRGTFPVLCALRLAPLVF
QRPGELRAAEWEEFDLDAATWEIPSARMKRRKKDKASGGAHIVPLASQAISVLRELHLLTGNGRYLFSGARSKTRPMSDN
TVNAALRRLGYDSSTMTGHGFRATARTIMAEQLGIPKEIIEAQLAHAVKDPLGRAYDRTVYLAQRGEMMQKWANYLDRLK
AGATIVPIAAAR
>Mature_411_residues
ALTDMAIRRAKPMEKQQKLFDSGGLFLLVTPAGGKRWVLKYRFGGREKSLAFGTYPEVSLVEARKKRDAAREKLAANIDP
GEAKKAEKRTQRLNAENSFEAIAREWHAKYAPTWSDSHGNRILRRLEVDAFPWIGGKPMANLTPPDVLDILRRVEKRGAL
ETAHRLRGNVGQVCRYAVATGRAERDVTSDLRGALPPPETEHFAAVTAPKELGELLRAIDSYRGTFPVLCALRLAPLVFQ
RPGELRAAEWEEFDLDAATWEIPSARMKRRKKDKASGGAHIVPLASQAISVLRELHLLTGNGRYLFSGARSKTRPMSDNT
VNAALRRLGYDSSTMTGHGFRATARTIMAEQLGIPKEIIEAQLAHAVKDPLGRAYDRTVYLAQRGEMMQKWANYLDRLKA
GATIVPIAAAR

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=396, Percent_Identity=34.8484848484849, Blast_Score=231, Evalue=7e-62,
Organism=Escherichia coli, GI1788974, Length=406, Percent_Identity=32.7586206896552, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI145693166, Length=402, Percent_Identity=35.5721393034826, Blast_Score=214, Evalue=7e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45843; Mature: 45712

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTDMAIRRAKPMEKQQKLFDSGGLFLLVTPAGGKRWVLKYRFGGREKSLAFGTYPEVS
CCCHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCCCCEEECCCCCHH
LVEARKKRDAAREKLAANIDPGEAKKAEKRTQRLNAENSFEAIAREWHAKYAPTWSDSHG
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH
NRILRRLEVDAFPWIGGKPMANLTPPDVLDILRRVEKRGALETAHRLRGNVGQVCRYAVA
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH
TGRAERDVTSDLRGALPPPETEHFAAVTAPKELGELLRAIDSYRGTFPVLCALRLAPLVF
HCCCHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QRPGELRAAEWEEFDLDAATWEIPSARMKRRKKDKASGGAHIVPLASQAISVLRELHLLT
CCCCCCCCCCCCHHCCCCHHCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHC
GNGRYLFSGARSKTRPMSDNTVNAALRRLGYDSSTMTGHGFRATARTIMAEQLGIPKEII
CCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH
EAQLAHAVKDPLGRAYDRTVYLAQRGEMMQKWANYLDRLKAGATIVPIAAAR
HHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
>Mature Secondary Structure 
ALTDMAIRRAKPMEKQQKLFDSGGLFLLVTPAGGKRWVLKYRFGGREKSLAFGTYPEVS
CCHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCCCCEEECCCCCHH
LVEARKKRDAAREKLAANIDPGEAKKAEKRTQRLNAENSFEAIAREWHAKYAPTWSDSHG
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH
NRILRRLEVDAFPWIGGKPMANLTPPDVLDILRRVEKRGALETAHRLRGNVGQVCRYAVA
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH
TGRAERDVTSDLRGALPPPETEHFAAVTAPKELGELLRAIDSYRGTFPVLCALRLAPLVF
HCCCHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QRPGELRAAEWEEFDLDAATWEIPSARMKRRKKDKASGGAHIVPLASQAISVLRELHLLT
CCCCCCCCCCCCHHCCCCHHCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHC
GNGRYLFSGARSKTRPMSDNTVNAALRRLGYDSSTMTGHGFRATARTIMAEQLGIPKEII
CCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH
EAQLAHAVKDPLGRAYDRTVYLAQRGEMMQKWANYLDRLKAGATIVPIAAAR
HHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]