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The map label for this gene is ompA [H]

Identifier: 237813303

GI number: 237813303

Start: 2986892

End: 2987566

Strand: Direct

Name: ompA [H]

Synonym: GBP346_A3070

Alternate gene names: 237813303

Gene position: 2986892-2987566 (Clockwise)

Preceding gene: 237813302

Following gene: 237813304

Centisome position: 72.88

GC content: 62.81

Gene sequence:

>675_bases
ATGAATAAACTTTCAAAGCTCGCGTTCATTGCAGCTACCGCAGTTATGGCTGCATCCGCTTCGGCACAGTCGGTGCCGGC
GTCGCGACAAGCCGTGAATGACAACTGGGTGAATGGCACGGGCGAATGGGTGTGGATGAACGGCACGAACGAGCTCTGCT
GGCGCGATGCGTTCTGGACGCCGGCCACCGCCAACGCCAAGTGCGATGGCGCACTGGTCGCCCAGGCACCGGCACCGGCG
CCGGTCGCACCGGTTGCTCCGGCCATCACGAGCCAGAAGATTACGTACCAAGCCGATACGCTGTTCGACTTCGACAAGGC
CGTCCTGAAGCCGGCCGGCAAGCAGAAGCTTGACGAACTGGCCGCGAAGATCCAGGGCATGAACGTCGAAGTGGTCGTGG
CCACGGGCTACACGGACCGCATCGGTTCGGACAAGTACAACGACCGTCTGTCGCTGCGCCGCGCGCAAGCCGTCAAGTCG
TACCTCGTCAGCAAGGGTGTCCCGGCGAACAAGGTCTACACGGAAGGCAAGGGCAAGCGCAACCCGGTCACGGGCAACAC
CTGCAAGCAGAAGAACCGCAAGCAGCTCATCGCCTGCCTCGCACCGGACCGCCGCGTGGAAGTCGAAGTGGTCGGCACGC
AGGAAGTGCAGAAGACGACCGTTCCGGCGCAGTAA

Upstream 100 bases:

>100_bases
TTTGTGCCGCACCAATGTTATACTTCGAGCAATGTATGACTTGTCATCGTCAACAGGCTCGCAGTAAACCTGCGGTAATC
TCAATTTCGAGAGGAGAAAT

Downstream 100 bases:

>100_bases
GCCGCGAATCGATCGCATCTGCTTCAAAAGCCCCGCTCCAGCGGGGCTTTTTCATTGATGCGGCCCGCCTTACCCGCGGC
CGCGTTCCTGGCGACCTCGC

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MNKLSKLAFIAATAVMAASASAQSVPASRQAVNDNWVNGTGEWVWMNGTNELCWRDAFWTPATANAKCDGALVAQAPAPA
PVAPVAPAITSQKITYQADTLFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTDRIGSDKYNDRLSLRRAQAVKS
YLVSKGVPANKVYTEGKGKRNPVTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQEVQKTTVPAQ

Sequences:

>Translated_224_residues
MNKLSKLAFIAATAVMAASASAQSVPASRQAVNDNWVNGTGEWVWMNGTNELCWRDAFWTPATANAKCDGALVAQAPAPA
PVAPVAPAITSQKITYQADTLFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTDRIGSDKYNDRLSLRRAQAVKS
YLVSKGVPANKVYTEGKGKRNPVTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQEVQKTTVPAQ
>Mature_224_residues
MNKLSKLAFIAATAVMAASASAQSVPASRQAVNDNWVNGTGEWVWMNGTNELCWRDAFWTPATANAKCDGALVAQAPAPA
PVAPVAPAITSQKITYQADTLFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTDRIGSDKYNDRLSLRRAQAVKS
YLVSKGVPANKVYTEGKGKRNPVTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQEVQKTTVPAQ

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=131, Percent_Identity=52.6717557251908, Blast_Score=140, Evalue=5e-35,
Organism=Escherichia coli, GI48994946, Length=109, Percent_Identity=35.7798165137615, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 24078; Mature: 24078

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLSKLAFIAATAVMAASASAQSVPASRQAVNDNWVNGTGEWVWMNGTNELCWRDAFWT
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEEECCCCC
PATANAKCDGALVAQAPAPAPVAPVAPAITSQKITYQADTLFDFDKAVLKPAGKQKLDEL
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCHHHHHHH
AAKIQGMNVEVVVATGYTDRIGSDKYNDRLSLRRAQAVKSYLVSKGVPANKVYTEGKGKR
HHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
NPVTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQEVQKTTVPAQ
CCCCCCHHHHCCHHHEEEEECCCCEEEEEEECCCHHHHCCCCCC
>Mature Secondary Structure
MNKLSKLAFIAATAVMAASASAQSVPASRQAVNDNWVNGTGEWVWMNGTNELCWRDAFWT
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEEECCCCC
PATANAKCDGALVAQAPAPAPVAPVAPAITSQKITYQADTLFDFDKAVLKPAGKQKLDEL
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCHHHHHHH
AAKIQGMNVEVVVATGYTDRIGSDKYNDRLSLRRAQAVKSYLVSKGVPANKVYTEGKGKR
HHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
NPVTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQEVQKTTVPAQ
CCCCCCHHHHCCHHHEEEEECCCCEEEEEEECCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]