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The map label for this gene is yhcS [C]

Identifier: 237813181

GI number: 237813181

Start: 2868736

End: 2869644

Strand: Direct

Name: yhcS [C]

Synonym: GBP346_A2943

Alternate gene names: 237813181

Gene position: 2868736-2869644 (Clockwise)

Preceding gene: 237813178

Following gene: 237813182

Centisome position: 69.99

GC content: 71.95

Gene sequence:

>909_bases
ATGCGGGACCTGAACGATCTCTATTACTTCGTGCAAGTCGTCGATCACGGCGGCTTCGCGCCGGCCGGGCGCGCGCTGAA
CCTGCCGAAGTCGAAGCTGAGTCGGCGCATCGCGCGCCTCGAGGAGCGGATCGGCATGCGCCTCATCCAGCGCTCGACGC
GGCGCTTCGCCGTCACCGATATCGGCCAGACCTACTACGCGCATTGCCGCGCGATGCTCGTCGAAGCGGACGCGGCCGAC
GAAGCGGTCGCGCTGGTGCGCACCGAGCCGCGCGGCATCGTCCGGATGACCTGCCCCGTCGCGCTCCTCGACGCGCTCGT
CGGCGACATGATCGCGGCGTTCATGGCCGAATGCCCGCTCGTCGAGATCCATCTGGAGGAAACCAACCGGCGCGTCGACG
TCGTCGGCGAGGGAATCGACATCGCGCTGCGCGTGCGGCCGCCGCCGCTCGAGGACAGCGATCTCGCGCTGCGCGTGCTC
GCCGAGCGCGGGCAATGCCTCGTTGCGAGCCCGCGGCTCGTCGAGCGCGCCGGCGCCGCGCCACGCGTGCCCGCCGATCT
CGCCGCGCTACCGAGCATCGCGCTCGGCCTGCCGCAGGACGAACATGTCTGGAATCTGCGCGGCCCGGACGGCGCGCATG
CGGCGATCCATCATCGCCCGCGGCTCGTCACGCGCGGGATGCTCGCGCTGCGCGCGGCGGCCGTCGCGGGCGTCGGCGTC
GTTCAGTTGCCGACGATGATGGTCCGCGAGCAGATCGCGCGCGGCGAGCTGCGGCAACTGCTGCCCGGCTGGGCGCCGCG
CCGCGAGATCGTGCATGCGGTGTTCGCGTCGCGCCGCGGGCTGCTGCCGTCCGTGCGCGCGCTGCTCGACTTTCTCGCAC
AGCGTTTCGCCGCGCTCGAGCCGGATTAG

Upstream 100 bases:

>100_bases
AGCGAACGCTTCGATCGATGGATAGAAGATATAATCGGAACGATAGATTCAGTAGACCGCGAAAATCACACTCAGTGTTC
CATTTAAAGAACGATCGACC

Downstream 100 bases:

>100_bases
ACGAACGCTCGGGCATCCGGCCGATATCGCGCGCGCAGTCGACCGAGCGCCGATCGAATCCGGCTCGCCCATGCGGCGAC
GCCGCGCGCGACGGCGAATT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRDLNDLYYFVQVVDHGGFAPAGRALNLPKSKLSRRIARLEERIGMRLIQRSTRRFAVTDIGQTYYAHCRAMLVEADAAD
EAVALVRTEPRGIVRMTCPVALLDALVGDMIAAFMAECPLVEIHLEETNRRVDVVGEGIDIALRVRPPPLEDSDLALRVL
AERGQCLVASPRLVERAGAAPRVPADLAALPSIALGLPQDEHVWNLRGPDGAHAAIHHRPRLVTRGMLALRAAAVAGVGV
VQLPTMMVREQIARGELRQLLPGWAPRREIVHAVFASRRGLLPSVRALLDFLAQRFAALEPD

Sequences:

>Translated_302_residues
MRDLNDLYYFVQVVDHGGFAPAGRALNLPKSKLSRRIARLEERIGMRLIQRSTRRFAVTDIGQTYYAHCRAMLVEADAAD
EAVALVRTEPRGIVRMTCPVALLDALVGDMIAAFMAECPLVEIHLEETNRRVDVVGEGIDIALRVRPPPLEDSDLALRVL
AERGQCLVASPRLVERAGAAPRVPADLAALPSIALGLPQDEHVWNLRGPDGAHAAIHHRPRLVTRGMLALRAAAVAGVGV
VQLPTMMVREQIARGELRQLLPGWAPRREIVHAVFASRRGLLPSVRALLDFLAQRFAALEPD
>Mature_302_residues
MRDLNDLYYFVQVVDHGGFAPAGRALNLPKSKLSRRIARLEERIGMRLIQRSTRRFAVTDIGQTYYAHCRAMLVEADAAD
EAVALVRTEPRGIVRMTCPVALLDALVGDMIAAFMAECPLVEIHLEETNRRVDVVGEGIDIALRVRPPPLEDSDLALRVL
AERGQCLVASPRLVERAGAAPRVPADLAALPSIALGLPQDEHVWNLRGPDGAHAAIHHRPRLVTRGMLALRAAAVAGVGV
VQLPTMMVREQIARGELRQLLPGWAPRREIVHAVFASRRGLLPSVRALLDFLAQRFAALEPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=28.0405405405405, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=27.5862068965517, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=30.9210526315789, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=28.3333333333333, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=23.0240549828179, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=24.1379310344828, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787589, Length=298, Percent_Identity=25.503355704698, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI157672245, Length=124, Percent_Identity=30.6451612903226, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788297, Length=267, Percent_Identity=26.9662921348315, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786448, Length=259, Percent_Identity=27.027027027027, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33165; Mature: 33165

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS50931 HTH_LYSR ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLNDLYYFVQVVDHGGFAPAGRALNLPKSKLSRRIARLEERIGMRLIQRSTRRFAVTD
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH
IGQTYYAHCRAMLVEADAADEAVALVRTEPRGIVRMTCPVALLDALVGDMIAAFMAECPL
HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCE
VEIHLEETNRRVDVVGEGIDIALRVRPPPLEDSDLALRVLAERGQCLVASPRLVERAGAA
EEEEECCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCHHHHHCCCC
PRVPADLAALPSIALGLPQDEHVWNLRGPDGAHAAIHHRPRLVTRGMLALRAAAVAGVGV
CCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCH
VQLPTMMVREQIARGELRQLLPGWAPRREIVHAVFASRRGLLPSVRALLDFLAQRFAALE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
PD
CC
>Mature Secondary Structure
MRDLNDLYYFVQVVDHGGFAPAGRALNLPKSKLSRRIARLEERIGMRLIQRSTRRFAVTD
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH
IGQTYYAHCRAMLVEADAADEAVALVRTEPRGIVRMTCPVALLDALVGDMIAAFMAECPL
HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCE
VEIHLEETNRRVDVVGEGIDIALRVRPPPLEDSDLALRVLAERGQCLVASPRLVERAGAA
EEEEECCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCHHHHHCCCC
PRVPADLAALPSIALGLPQDEHVWNLRGPDGAHAAIHHRPRLVTRGMLALRAAAVAGVGV
CCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCH
VQLPTMMVREQIARGELRQLLPGWAPRREIVHAVFASRRGLLPSVRALLDFLAQRFAALE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
PD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]