| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812957
Identifier: 237812957
GI number: 237812957
Start: 2646911
End: 2648404
Strand: Reverse
Name: 237812957
Synonym: GBP346_A2717
Alternate gene names: NA
Gene position: 2648404-2646911 (Counterclockwise)
Preceding gene: 237812958
Following gene: 237812956
Centisome position: 64.62
GC content: 67.6
Gene sequence:
>1494_bases ATGAGCCGGGCGTATCCGATGCTCGCGCGACGCGGGTTCGTGGTACCGACGCGGCTGAAGGCGGCGGCGTACGAATCGGC GAGCACGGGCGGCGCTCGCGCACGGTCGTGGAAGGCGTCGAGTGCCGGACCGAACGCGGCGGCCGCGCAAAACCTGCCGC TGATGCGGCATCGGGCGCGCGACGCGATCCGAAACGACCCGTGGGCGAAAGCCGCGATCACGCGGCTCGTGTCGAACACG ATCGGTTCCGGCATACAGGCGCATCCGCGACATCCCGACGAGGCGATGCGAAACGCGCAAAAGCAGCTTTGGGAAGACAG CACCGAGGAGATCGACGCGGACGGGCTGTTCGACATGGCGGGTTTGCAGACGCTCGCTGCTCGCGCGTTCTTCAGCGACG GCGAGGTGCTCGTGCGGCGGCGTCTGCGCAGCTGGCACGATGGCTTGGCCGTGCCGTTGCAGGTGCAGTTGCTCGAAGCC GATCATCTGCCGGTGAGCAAGAACGAACGCCTGCCGCGCGGGGAGATCGTCAACGGCGTCGAGTTCGACGACGATGGACG GCGCATTGCCTATCACCTGCTGACGCGGCATCCCGGCGAGTACGGTCGACAGGCCGGCGACAGCACGCGGACGGTGCGCG TGCCGGCCGACGAGATCGCGCACGTGTTCCTTGCGCTGCGGCCGGGGCAGGTGCGCGGCGTGCCCGAACTGTCGACGGTG CTGCTGCGGCTGCATTCGCTCGACAACTTCGACGACGCGGTGCTGTTCCGGCAAGAGGTCAGCAACCTGTTCGCGGGCTT CATCACGAAGCCGCACGCGGAGCTTGGGCCGATGGGCGATCCCGTTTCGGGCGCGCCGATGCGATACGACGACGACGGGT TTTCGCCGGTCGTGTCGCTCGAACCCGGCGGCATGCAGGAGCTTGCGCCCGGTGAGGAGGTGAGATTTTCGGAGCCGCCG GGCGCGGGCAACGACTATGTGCCGTTCATGCGCCAGCAACTGATGGCGTCGGCCGCGTCGGTCGGCATGCCTTACGAGGT GCTCACGGGCGATCTGCGCGACGTGAGCGATCGCGTGCTGCGCGTGATTCTCAACGAGTTCCGGCGCAGCGTCGAACAGA TTCAGTGGAATGTGTTCATTCACCAGTTCTGCCGCAAGGTGTGGCGCTGGTGGGTCGACGCATGCGCGCTGTCGGGCGCG CTGCCGATGCCGAACTACTTCCGCCGGCGTCGCGACTATCTGCGCGTGCGATGGGTGCCGCAGGGCTGGCCGTATATCCA TCCGGTGCAGGACGTCACCGCGAAGCGCATGGAGATCCGCGCGGGCCTCGCGAGCCGCACGGGCGCGGTGCTCGCGCGCG GCGACGATCCGGAGCAGGTCGACGCGGAGAACGCGGCGGATCTCGCGCGCGAGCAGCGGCTCGGCCTGCGATACGACACG CAGCTCGCGATTGAAGACGGAAACGGCAGTGTTTTGAAAGAGGACGGTGAATGA
Upstream 100 bases:
>100_bases TGGAGCTTCGCGAGGCGCAAACCGAGATCATTCGTGCGCTCGACGGCGCGAGCGGGCGCTCGCGCATCGTTCGGCTGCGG CACGCCGGCAAGGGGGTTCG
Downstream 100 bases:
>100_bases AACGAAACCGCAAGTGGTGGGACATCCGCGCGCAGGCGCAGGCGGGCGGCGGCAAGGTCGCCGAGATCCGGATCTATAGC GACATCGGATTCTGGGGCAC
Product: phage portal protein, lambda family
Products: NA
Alternate protein names: Lambda Family Phage Portal Protein; Phage Portal Protein; Phage Portal Protein Lambda; Portal Protein; Bacteriophage Capsid Protein; Portal Protein Lambda Family; Phage-Related Portal Protein; Phage Portal Protein Of Lambda Family; Portal Protein B; Portal Protein Putative Prophage; Bacteriophage-Related Protein; Prophage; Head-Tail Preconnector Protein Phage Origin; Portal Protein GPB Of Phage Lambda; Phage Protein Gp; Phage Portal Protein Lambda Family Protein
Number of amino acids: Translated: 497; Mature: 496
Protein sequence:
>497_residues MSRAYPMLARRGFVVPTRLKAAAYESASTGGARARSWKASSAGPNAAAAQNLPLMRHRARDAIRNDPWAKAAITRLVSNT IGSGIQAHPRHPDEAMRNAQKQLWEDSTEEIDADGLFDMAGLQTLAARAFFSDGEVLVRRRLRSWHDGLAVPLQVQLLEA DHLPVSKNERLPRGEIVNGVEFDDDGRRIAYHLLTRHPGEYGRQAGDSTRTVRVPADEIAHVFLALRPGQVRGVPELSTV LLRLHSLDNFDDAVLFRQEVSNLFAGFITKPHAELGPMGDPVSGAPMRYDDDGFSPVVSLEPGGMQELAPGEEVRFSEPP GAGNDYVPFMRQQLMASAASVGMPYEVLTGDLRDVSDRVLRVILNEFRRSVEQIQWNVFIHQFCRKVWRWWVDACALSGA LPMPNYFRRRRDYLRVRWVPQGWPYIHPVQDVTAKRMEIRAGLASRTGAVLARGDDPEQVDAENAADLAREQRLGLRYDT QLAIEDGNGSVLKEDGE
Sequences:
>Translated_497_residues MSRAYPMLARRGFVVPTRLKAAAYESASTGGARARSWKASSAGPNAAAAQNLPLMRHRARDAIRNDPWAKAAITRLVSNT IGSGIQAHPRHPDEAMRNAQKQLWEDSTEEIDADGLFDMAGLQTLAARAFFSDGEVLVRRRLRSWHDGLAVPLQVQLLEA DHLPVSKNERLPRGEIVNGVEFDDDGRRIAYHLLTRHPGEYGRQAGDSTRTVRVPADEIAHVFLALRPGQVRGVPELSTV LLRLHSLDNFDDAVLFRQEVSNLFAGFITKPHAELGPMGDPVSGAPMRYDDDGFSPVVSLEPGGMQELAPGEEVRFSEPP GAGNDYVPFMRQQLMASAASVGMPYEVLTGDLRDVSDRVLRVILNEFRRSVEQIQWNVFIHQFCRKVWRWWVDACALSGA LPMPNYFRRRRDYLRVRWVPQGWPYIHPVQDVTAKRMEIRAGLASRTGAVLARGDDPEQVDAENAADLAREQRLGLRYDT QLAIEDGNGSVLKEDGE >Mature_496_residues SRAYPMLARRGFVVPTRLKAAAYESASTGGARARSWKASSAGPNAAAAQNLPLMRHRARDAIRNDPWAKAAITRLVSNTI GSGIQAHPRHPDEAMRNAQKQLWEDSTEEIDADGLFDMAGLQTLAARAFFSDGEVLVRRRLRSWHDGLAVPLQVQLLEAD HLPVSKNERLPRGEIVNGVEFDDDGRRIAYHLLTRHPGEYGRQAGDSTRTVRVPADEIAHVFLALRPGQVRGVPELSTVL LRLHSLDNFDDAVLFRQEVSNLFAGFITKPHAELGPMGDPVSGAPMRYDDDGFSPVVSLEPGGMQELAPGEEVRFSEPPG AGNDYVPFMRQQLMASAASVGMPYEVLTGDLRDVSDRVLRVILNEFRRSVEQIQWNVFIHQFCRKVWRWWVDACALSGAL PMPNYFRRRRDYLRVRWVPQGWPYIHPVQDVTAKRMEIRAGLASRTGAVLARGDDPEQVDAENAADLAREQRLGLRYDTQ LAIEDGNGSVLKEDGE
Specific function: Unknown
COG id: COG5511
COG function: function code R; Bacteriophage capsid protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55438; Mature: 55307
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAYPMLARRGFVVPTRLKAAAYESASTGGARARSWKASSAGPNAAAAQNLPLMRHRAR CCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHH DAIRNDPWAKAAITRLVSNTIGSGIQAHPRHPDEAMRNAQKQLWEDSTEEIDADGLFDMA HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHH GLQTLAARAFFSDGEVLVRRRLRSWHDGLAVPLQVQLLEADHLPVSKNERLPRGEIVNGV HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC EFDDDGRRIAYHLLTRHPGEYGRQAGDSTRTVRVPADEIAHVFLALRPGQVRGVPELSTV CCCCCCHHHHHHHHHCCCHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCHHHHHH LLRLHSLDNFDDAVLFRQEVSNLFAGFITKPHAELGPMGDPVSGAPMRYDDDGFSPVVSL HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEE EPGGMQELAPGEEVRFSEPPGAGNDYVPFMRQQLMASAASVGMPYEVLTGDLRDVSDRVL CCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHH RVILNEFRRSVEQIQWNVFIHQFCRKVWRWWVDACALSGALPMPNYFRRRRDYLRVRWVP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCEEEEEEC QGWPYIHPVQDVTAKRMEIRAGLASRTGAVLARGDDPEQVDAENAADLAREQRLGLRYDT CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHCCCHHHHHHHHHHHCCCEECC QLAIEDGNGSVLKEDGE EEEEECCCCCEECCCCC >Mature Secondary Structure SRAYPMLARRGFVVPTRLKAAAYESASTGGARARSWKASSAGPNAAAAQNLPLMRHRAR CCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHH DAIRNDPWAKAAITRLVSNTIGSGIQAHPRHPDEAMRNAQKQLWEDSTEEIDADGLFDMA HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHH GLQTLAARAFFSDGEVLVRRRLRSWHDGLAVPLQVQLLEADHLPVSKNERLPRGEIVNGV HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC EFDDDGRRIAYHLLTRHPGEYGRQAGDSTRTVRVPADEIAHVFLALRPGQVRGVPELSTV CCCCCCHHHHHHHHHCCCHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCHHHHHH LLRLHSLDNFDDAVLFRQEVSNLFAGFITKPHAELGPMGDPVSGAPMRYDDDGFSPVVSL HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEE EPGGMQELAPGEEVRFSEPPGAGNDYVPFMRQQLMASAASVGMPYEVLTGDLRDVSDRVL CCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHH RVILNEFRRSVEQIQWNVFIHQFCRKVWRWWVDACALSGALPMPNYFRRRRDYLRVRWVP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCEEEEEEC QGWPYIHPVQDVTAKRMEIRAGLASRTGAVLARGDDPEQVDAENAADLAREQRLGLRYDT CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHCCCHHHHHHHHHHHCCCEECC QLAIEDGNGSVLKEDGE EEEEECCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA