| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812947
Identifier: 237812947
GI number: 237812947
Start: 2640849
End: 2641742
Strand: Reverse
Name: 237812947
Synonym: GBP346_A2707
Alternate gene names: NA
Gene position: 2641742-2640849 (Counterclockwise)
Preceding gene: 237812948
Following gene: 237812946
Centisome position: 64.46
GC content: 67.11
Gene sequence:
>894_bases ATGACGATGATCGATCTGTCGCTGCTCGATCCGCCCGATCTGGTCGAGACGCTCGACTTCGAAGCGGCGTATCAGATGAA GCTCGCGTACTTCAAGCGCATCTATCCGGACTGGAGCGCCGCGCTCGAATCCGATCCGGTCGTCAAGCTGATCGAGCTGG CCGCATACGACGAGATCCGATCGGGGGCACGCCTCAACGATGCCGCGCGGGCGACCATGCTCGCGTACGCGACCGGCGCG GATCTCGAACACGTTGCCGCACTGATGGGCGTCGAGAAGGCGCTCGTCGATCCCGGCGATCCGGATGCGACGCCGCCGCG CTCGCCGATCTACGAGCGAGACGAGCGATTCCGATTGCGCACGCAACTGGCGATCGAGACGTCGACCGACGCGGGGCCGA TCGACGCCTATCGCAAGCACGCGCTCGACGTGTCGCCCGAGGTGCTCGACGTGCAAGTCGATCGTCCGGAGCCGGGCACG GTTCGCGTGACGATCATGTCGCAGTCGAATGGGGGCATCGCGAATGACGCGCTGCTCGCGAAGGTGCGCGTGGCGTTGTC CGCCGAAGACGTGCGGCCGTTGACCGACACGGTGCTTGTCGTGCCGGCCCGGCCGGTTGCATACGTGATCGAGGCGGACG TCTACGTGGGACGCGGCCCGGACCCTGCCGTCGTGCTGGCCGAGCGACGGCGCGATCTCGACGCCGCGATCGACGCGGCA CGCCGGCTCAAGCTCGGGATGGCGCGATCGGCGATCGCGGGCGCGCTTCATCCGCGCGGCAGCAGCGTCGCGCGCGTCGA TCTGAAAGCTCCGCTGGGCGACGTCACGTGCAACGGGCAGGAGTTCGCCGATTGCACGTCCGTCGTCCTGAATCTGAAGG TGCTCGATGAGTGA
Upstream 100 bases:
>100_bases GGCTCGATCGTGTCGTCGCGCTTGCGGTCGTCGACGGGCGCGTGACGTTCGAGATTCGCGGCCATGTCGACGGCAAGGCG GAGATATTCGAGGTGACGGT
Downstream 100 bases:
>100_bases ACGTCTATTGCCGTCGAATCAGACGCCGCTCGAAGCCGCGCTCGCTCGCGTGCTGCGGCCGAGCGTCGATCCGGAGATCC TGCGCACGCTGATGGACGTC
Product: hypothetical protein
Products: NA
Alternate protein names: Baseplate Assembly Protein J; Baseplate J-Like Protein; Phage Baseplate Assembly Protein; Phage-Related Baseplate Assembly Protein; Bacteriophage Baseplate Assembly Protein; Phage Baseplate Assembly Protein J; Pyocin R2_PP Baseplate/Tail Fiber Protein; Phage Protein Gp; Bacteriophage Baseplate Assembly Protein J; Phage Baseplate J-Like Protein; Prophage LambdaW5 Baseplate Assembly Protein J; Baseplate Assembly-Like Protein; Phage Baseplate Assembly; Prophage; GPJ Of Phage P2-Like; Phage P2 Baseplate Assembly Protein; Phage Tail-Like Protein; Bacteriophage Protein; Phage P2 Baseplate Assembly GpJ-Like Protein; Prophage Baseplate Assembly Protein; Bacteriophage P2 Baseplate Assembly Protein GPJ; Baseplate Assembly Protein GpJ; Baseplate Assembly Protein J Prophage; Baseplate Assembly Protein; Baseplate Protein Putative Phage Associated Protein; Prophage LambdaW1 Baseplate Assembly Protein J; Phage Tail Protein
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MTMIDLSLLDPPDLVETLDFEAAYQMKLAYFKRIYPDWSAALESDPVVKLIELAAYDEIRSGARLNDAARATMLAYATGA DLEHVAALMGVEKALVDPGDPDATPPRSPIYERDERFRLRTQLAIETSTDAGPIDAYRKHALDVSPEVLDVQVDRPEPGT VRVTIMSQSNGGIANDALLAKVRVALSAEDVRPLTDTVLVVPARPVAYVIEADVYVGRGPDPAVVLAERRRDLDAAIDAA RRLKLGMARSAIAGALHPRGSSVARVDLKAPLGDVTCNGQEFADCTSVVLNLKVLDE
Sequences:
>Translated_297_residues MTMIDLSLLDPPDLVETLDFEAAYQMKLAYFKRIYPDWSAALESDPVVKLIELAAYDEIRSGARLNDAARATMLAYATGA DLEHVAALMGVEKALVDPGDPDATPPRSPIYERDERFRLRTQLAIETSTDAGPIDAYRKHALDVSPEVLDVQVDRPEPGT VRVTIMSQSNGGIANDALLAKVRVALSAEDVRPLTDTVLVVPARPVAYVIEADVYVGRGPDPAVVLAERRRDLDAAIDAA RRLKLGMARSAIAGALHPRGSSVARVDLKAPLGDVTCNGQEFADCTSVVLNLKVLDE >Mature_296_residues TMIDLSLLDPPDLVETLDFEAAYQMKLAYFKRIYPDWSAALESDPVVKLIELAAYDEIRSGARLNDAARATMLAYATGAD LEHVAALMGVEKALVDPGDPDATPPRSPIYERDERFRLRTQLAIETSTDAGPIDAYRKHALDVSPEVLDVQVDRPEPGTV RVTIMSQSNGGIANDALLAKVRVALSAEDVRPLTDTVLVVPARPVAYVIEADVYVGRGPDPAVVLAERRRDLDAAIDAAR RLKLGMARSAIAGALHPRGSSVARVDLKAPLGDVTCNGQEFADCTSVVLNLKVLDE
Specific function: Unknown
COG id: COG3948
COG function: function code R; Phage-related baseplate assembly protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32114; Mature: 31983
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMIDLSLLDPPDLVETLDFEAAYQMKLAYFKRIYPDWSAALESDPVVKLIELAAYDEIR CEEEEEECCCCHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHH SGARLNDAARATMLAYATGADLEHVAALMGVEKALVDPGDPDATPPRSPIYERDERFRLR CCCCCCHHHHHEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHEEEE TQLAIETSTDAGPIDAYRKHALDVSPEVLDVQVDRPEPGTVRVTIMSQSNGGIANDALLA EEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCHHHHHH KVRVALSAEDVRPLTDTVLVVPARPVAYVIEADVYVGRGPDPAVVLAERRRDLDAAIDAA HHHHHHCCCCCCCCCCEEEEECCCCEEEEEEECEEECCCCCCEEEEEHHHCCHHHHHHHH RRLKLGMARSAIAGALHPRGSSVARVDLKAPLGDVTCNGQEFADCTSVVLNLKVLDE HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEECCHHHHHHHHHHEEEEEECC >Mature Secondary Structure TMIDLSLLDPPDLVETLDFEAAYQMKLAYFKRIYPDWSAALESDPVVKLIELAAYDEIR EEEEEECCCCHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHH SGARLNDAARATMLAYATGADLEHVAALMGVEKALVDPGDPDATPPRSPIYERDERFRLR CCCCCCHHHHHEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHEEEE TQLAIETSTDAGPIDAYRKHALDVSPEVLDVQVDRPEPGTVRVTIMSQSNGGIANDALLA EEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCHHHHHH KVRVALSAEDVRPLTDTVLVVPARPVAYVIEADVYVGRGPDPAVVLAERRRDLDAAIDAA HHHHHHCCCCCCCCCCEEEEECCCCEEEEEEECEEECCCCCCEEEEEHHHCCHHHHHHHH RRLKLGMARSAIAGALHPRGSSVARVDLKAPLGDVTCNGQEFADCTSVVLNLKVLDE HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEECCHHHHHHHHHHEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA