| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is yheS [H]
Identifier: 237812826
GI number: 237812826
Start: 2517136
End: 2519076
Strand: Direct
Name: yheS [H]
Synonym: GBP346_A2580
Alternate gene names: 237812826
Gene position: 2517136-2519076 (Clockwise)
Preceding gene: 237812824
Following gene: 237812830
Centisome position: 61.41
GC content: 68.68
Gene sequence:
>1941_bases GTGATCCGTTTCAATCAGTTCAGCCTCGCCCGCGGCACGAAGCCGCTCTTCGACGCGACCTCGTTCACGCTGAATCCCGG CGAGAAGGCGGGCCTCGTCGGCGCGAACGGCGCCGGCAAATCCACGCTCTTCGCGGTGCTGCGCGGCGAGCTGCACGCGG ACGCGGGCGACTTCTCGATGCCGCCGGCGTGGCGCATCGCGCACGTGTCGCAGGAAACGCCCGCCGTCGAGCGCAGCGCG CTCGACTACACATTGGACGGCGACGCCGCGTTGCGCGCGATCGAGGCGCGCATCGCGCAGGCGTCCGCCGCGCACGACGG CGCAGCCGAGGCCGACGCGCACGCGGCGTTCGCGGACGCCGACGGCTACACCGCGCCCGCGCGCGCCGAGGCGCTGCTGC TCGGGCTCGGCTTCACGCTCGCGCAGACGCGCGAGCCCGTCGCGAGCTTCTCGGGCGGCTGGCGCATGCGCCTGAATCTC GCGCAGGCGCTGATGTGCCGCTCGGATCTGCTGCTGCTCGACGAGCCGACGAACCACCTGGATCTCGACGCGATCGTCTG GCTCGAAGACTGGCTGCATCGCTATTCGGGCACGCTCGTCATCATCTCGCACGATCGCGAATTCCTCGACGCCGTCTGCG ACGTGACGCTGCATCTCGAGAATCGCCAGGTGAAGCGTTACGGCGGCAACTACTCGCAGTTCGAAGTGCTGCGCGCGCAG CAGCTCGAATTGCAGCAAAGCGCATACGAAAAGCAGCAGAAGACGATTGCGCATCTGCAGAGCTTCGTCGACCGCTTCAA GGCGAAGGCGTCGAAGGCGAAACAGGCGCAAAGCCGGGTGAAGGCGCTCGAGAAGATGGAGCGGATCGCGCCCGCGCACA TCGCTTCGCCATTCACGTTCGAATTCCGCACGCCCGATTCCGCGCCGAACCCGATGCTCGTGATGGAAAACGTGCGCTGC GGCTACCGCGCGGACGACGGCGGCGAGATCCCGATCGTCGAGCGCGTCGCGCTGTCGATCCAGAACGGCCAGCGCATCGG CCTGCTCGGCGCGAACGGCCAGGGCAAGTCGACGCTCATCAAGACGCTCGCGGGCACGCTCGCGCCGCTGTCGGGCGAGC TGCGCACCGGCCGCGGGCTCACGATCGGCTATTTCGCCCAGCACCAGCTCGAGACGCTGCGCGAGGACGATTCGGCGCTC GCGCATCTCGCGCGCCTCGCCCCGGACACGCGCGAGCAGGAACTGCGCGACTTTCTCGGCGGCTTCAACTTCTCCGGCGA GATGGCGACCGCGCCGATCGCGCCGTTCTCCGGCGGCGAGAAAGCGCGGCTCGCGCTCGCGCTGATCATCTGGCGGAAGC CGAACCTGCTGCTGCTCGACGAGCCGACGAACCACCTCGATCTGGAAACGCGCCACGCGCTCACGATGGCGCTCGCGCAA TTCGAGGGCACGCTGATCCTCGTGTCGCACGACCGTCACCTGCTGCGCGCGACGACCGACCAGTTCATGCTGGTCGCGAA GCACCGGCTGCAGCCGTTCGACGGCGATCTCGACGACTACCGCGACTGGCTGCTGCAGCACGCGGCCGAACAGCGCGCGG CGGCGAAGGCAGCCTGCGGCCCGGCGGGCGACGCCGACGGCGGCGCGCCCGCCGTGAATCGCAAGGACCAGAAACGGCAG GAAGCCGAAGCGCGCCAGCGTCTGTCGCAGCTGAAGAAACCGCTGCAGGCGCGGATCACGAAGATCGAGAAGGAAATGGA GCGGCTGCACGCGCAGAAGGCGGAGCTCGACGCGTTCGTCGCCGATCCGGCGAGCTATGCGGCGGACCAGAAGGCGCGGC TCACCGATGCGATCCGCAAGCTCGGCGACGTCAACGGCCAGCTCGAAACGCTCGAGGCGGACTGGCTCGGCGCGCAGGAC GAGCTGGAAAAAATCGGGTGA
Upstream 100 bases:
>100_bases GTCTAGGCGAATTCGGCGCGGCGCGCACATTCCGCCATCCGGACGATCCCCCGAATGCGGCGCGCGGCTAGAATAACGGT TTTCCCCAGCATTTCTCGCC
Downstream 100 bases:
>100_bases CGAGCGCCGCACGGCAGCGGCATCGCAGCGCTGTCACGCGGCGTTCAGCGCCCGGGCGCCCGGGGCCGGGTTCTCGAGGC TTGAAACTCAGCGCCGCGGC
Product: ABC transporter, ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 646; Mature: 646
Protein sequence:
>646_residues MIRFNQFSLARGTKPLFDATSFTLNPGEKAGLVGANGAGKSTLFAVLRGELHADAGDFSMPPAWRIAHVSQETPAVERSA LDYTLDGDAALRAIEARIAQASAAHDGAAEADAHAAFADADGYTAPARAEALLLGLGFTLAQTREPVASFSGGWRMRLNL AQALMCRSDLLLLDEPTNHLDLDAIVWLEDWLHRYSGTLVIISHDREFLDAVCDVTLHLENRQVKRYGGNYSQFEVLRAQ QLELQQSAYEKQQKTIAHLQSFVDRFKAKASKAKQAQSRVKALEKMERIAPAHIASPFTFEFRTPDSAPNPMLVMENVRC GYRADDGGEIPIVERVALSIQNGQRIGLLGANGQGKSTLIKTLAGTLAPLSGELRTGRGLTIGYFAQHQLETLREDDSAL AHLARLAPDTREQELRDFLGGFNFSGEMATAPIAPFSGGEKARLALALIIWRKPNLLLLDEPTNHLDLETRHALTMALAQ FEGTLILVSHDRHLLRATTDQFMLVAKHRLQPFDGDLDDYRDWLLQHAAEQRAAAKAACGPAGDADGGAPAVNRKDQKRQ EAEARQRLSQLKKPLQARITKIEKEMERLHAQKAELDAFVADPASYAADQKARLTDAIRKLGDVNGQLETLEADWLGAQD ELEKIG
Sequences:
>Translated_646_residues MIRFNQFSLARGTKPLFDATSFTLNPGEKAGLVGANGAGKSTLFAVLRGELHADAGDFSMPPAWRIAHVSQETPAVERSA LDYTLDGDAALRAIEARIAQASAAHDGAAEADAHAAFADADGYTAPARAEALLLGLGFTLAQTREPVASFSGGWRMRLNL AQALMCRSDLLLLDEPTNHLDLDAIVWLEDWLHRYSGTLVIISHDREFLDAVCDVTLHLENRQVKRYGGNYSQFEVLRAQ QLELQQSAYEKQQKTIAHLQSFVDRFKAKASKAKQAQSRVKALEKMERIAPAHIASPFTFEFRTPDSAPNPMLVMENVRC GYRADDGGEIPIVERVALSIQNGQRIGLLGANGQGKSTLIKTLAGTLAPLSGELRTGRGLTIGYFAQHQLETLREDDSAL AHLARLAPDTREQELRDFLGGFNFSGEMATAPIAPFSGGEKARLALALIIWRKPNLLLLDEPTNHLDLETRHALTMALAQ FEGTLILVSHDRHLLRATTDQFMLVAKHRLQPFDGDLDDYRDWLLQHAAEQRAAAKAACGPAGDADGGAPAVNRKDQKRQ EAEARQRLSQLKKPLQARITKIEKEMERLHAQKAELDAFVADPASYAADQKARLTDAIRKLGDVNGQLETLEADWLGAQD ELEKIG >Mature_646_residues MIRFNQFSLARGTKPLFDATSFTLNPGEKAGLVGANGAGKSTLFAVLRGELHADAGDFSMPPAWRIAHVSQETPAVERSA LDYTLDGDAALRAIEARIAQASAAHDGAAEADAHAAFADADGYTAPARAEALLLGLGFTLAQTREPVASFSGGWRMRLNL AQALMCRSDLLLLDEPTNHLDLDAIVWLEDWLHRYSGTLVIISHDREFLDAVCDVTLHLENRQVKRYGGNYSQFEVLRAQ QLELQQSAYEKQQKTIAHLQSFVDRFKAKASKAKQAQSRVKALEKMERIAPAHIASPFTFEFRTPDSAPNPMLVMENVRC GYRADDGGEIPIVERVALSIQNGQRIGLLGANGQGKSTLIKTLAGTLAPLSGELRTGRGLTIGYFAQHQLETLREDDSAL AHLARLAPDTREQELRDFLGGFNFSGEMATAPIAPFSGGEKARLALALIIWRKPNLLLLDEPTNHLDLETRHALTMALAQ FEGTLILVSHDRHLLRATTDQFMLVAKHRLQPFDGDLDDYRDWLLQHAAEQRAAAKAACGPAGDADGGAPAVNRKDQKRQ EAEARQRLSQLKKPLQARITKIEKEMERLHAQKAELDAFVADPASYAADQKARLTDAIRKLGDVNGQLETLEADWLGAQD ELEKIG
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=534, Percent_Identity=39.1385767790262, Blast_Score=355, Evalue=1e-97, Organism=Homo sapiens, GI10947137, Length=533, Percent_Identity=36.0225140712946, Blast_Score=324, Evalue=2e-88, Organism=Homo sapiens, GI27881506, Length=533, Percent_Identity=36.0225140712946, Blast_Score=324, Evalue=2e-88, Organism=Homo sapiens, GI10947135, Length=545, Percent_Identity=34.3119266055046, Blast_Score=265, Evalue=1e-70, Organism=Homo sapiens, GI69354671, Length=545, Percent_Identity=34.3119266055046, Blast_Score=265, Evalue=1e-70, Organism=Homo sapiens, GI153792144, Length=231, Percent_Identity=28.1385281385281, Blast_Score=70, Evalue=9e-12, Organism=Homo sapiens, GI47078218, Length=223, Percent_Identity=27.8026905829596, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI45446740, Length=223, Percent_Identity=27.8026905829596, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI150417984, Length=217, Percent_Identity=29.4930875576037, Blast_Score=67, Evalue=5e-11, Organism=Escherichia coli, GI1789751, Length=645, Percent_Identity=53.6434108527132, Blast_Score=700, Evalue=0.0, Organism=Escherichia coli, GI1787041, Length=529, Percent_Identity=36.6729678638941, Blast_Score=340, Evalue=1e-94, Organism=Escherichia coli, GI1787182, Length=643, Percent_Identity=29.0824261275272, Blast_Score=211, Evalue=9e-56, Organism=Escherichia coli, GI2367384, Length=545, Percent_Identity=30.8256880733945, Blast_Score=209, Evalue=5e-55, Organism=Escherichia coli, GI87081782, Length=529, Percent_Identity=25.3308128544423, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI1788165, Length=204, Percent_Identity=31.8627450980392, Blast_Score=93, Evalue=5e-20, Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=31.6582914572864, Blast_Score=67, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17553372, Length=532, Percent_Identity=36.0902255639098, Blast_Score=333, Evalue=2e-91, Organism=Caenorhabditis elegans, GI17555318, Length=513, Percent_Identity=36.0623781676413, Blast_Score=322, Evalue=3e-88, Organism=Caenorhabditis elegans, GI17559834, Length=564, Percent_Identity=32.8014184397163, Blast_Score=300, Evalue=1e-81, Organism=Caenorhabditis elegans, GI17565586, Length=203, Percent_Identity=29.064039408867, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992285, Length=207, Percent_Identity=25.1207729468599, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=556, Percent_Identity=34.1726618705036, Blast_Score=320, Evalue=5e-88, Organism=Saccharomyces cerevisiae, GI6320874, Length=537, Percent_Identity=32.7746741154562, Blast_Score=287, Evalue=3e-78, Organism=Saccharomyces cerevisiae, GI6324314, Length=386, Percent_Identity=30.8290155440415, Blast_Score=162, Evalue=2e-40, Organism=Saccharomyces cerevisiae, GI6325030, Length=391, Percent_Identity=30.9462915601023, Blast_Score=157, Evalue=4e-39, Organism=Saccharomyces cerevisiae, GI6323278, Length=385, Percent_Identity=29.3506493506493, Blast_Score=154, Evalue=5e-38, Organism=Drosophila melanogaster, GI24666836, Length=528, Percent_Identity=38.4469696969697, Blast_Score=375, Evalue=1e-104, Organism=Drosophila melanogaster, GI24642252, Length=551, Percent_Identity=37.7495462794918, Blast_Score=349, Evalue=3e-96, Organism=Drosophila melanogaster, GI18859989, Length=551, Percent_Identity=37.7495462794918, Blast_Score=349, Evalue=3e-96, Organism=Drosophila melanogaster, GI24641342, Length=548, Percent_Identity=34.6715328467153, Blast_Score=310, Evalue=2e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 70903; Mature: 70903
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRFNQFSLARGTKPLFDATSFTLNPGEKAGLVGANGAGKSTLFAVLRGELHADAGDFSM CCEECCCHHCCCCCCCCCCCCEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCC PPAWRIAHVSQETPAVERSALDYTLDGDAALRAIEARIAQASAAHDGAAEADAHAAFADA CCCCEEEECCCCCCCHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC DGYTAPARAEALLLGLGFTLAQTREPVASFSGGWRMRLNLAQALMCRSDLLLLDEPTNHL CCCCCCHHHHEEEEECCHHHHHHHCHHHHCCCCEEEEHHHHHHHHHHCCEEEEECCCCCC DLDAIVWLEDWLHRYSGTLVIISHDREFLDAVCDVTLHLENRQVKRYGGNYSQFEVLRAQ CCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHCEEEEECCCHHHHHCCCHHHHHHHHHH QLELQQSAYEKQQKTIAHLQSFVDRFKAKASKAKQAQSRVKALEKMERIAPAHIASPFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCEEE EFRTPDSAPNPMLVMENVRCGYRADDGGEIPIVERVALSIQNGQRIGLLGANGQGKSTLI EEECCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHEECCCCEEEEEECCCCCHHHHH KTLAGTLAPLSGELRTGRGLTIGYFAQHQLETLREDDSALAHLARLAPDTREQELRDFLG HHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHC GFNFSGEMATAPIAPFSGGEKARLALALIIWRKPNLLLLDEPTNHLDLETRHALTMALAQ CCCCCCCCCCCCCCCCCCCCHHEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHH FEGTLILVSHDRHLLRATTDQFMLVAKHRLQPFDGDLDDYRDWLLQHAAEQRAAAKAACG HCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC PAGDADGGAPAVNRKDQKRQEAEARQRLSQLKKPLQARITKIEKEMERLHAQKAELDAFV CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADPASYAADQKARLTDAIRKLGDVNGQLETLEADWLGAQDELEKIG CCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHCC >Mature Secondary Structure MIRFNQFSLARGTKPLFDATSFTLNPGEKAGLVGANGAGKSTLFAVLRGELHADAGDFSM CCEECCCHHCCCCCCCCCCCCEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCC PPAWRIAHVSQETPAVERSALDYTLDGDAALRAIEARIAQASAAHDGAAEADAHAAFADA CCCCEEEECCCCCCCHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC DGYTAPARAEALLLGLGFTLAQTREPVASFSGGWRMRLNLAQALMCRSDLLLLDEPTNHL CCCCCCHHHHEEEEECCHHHHHHHCHHHHCCCCEEEEHHHHHHHHHHCCEEEEECCCCCC DLDAIVWLEDWLHRYSGTLVIISHDREFLDAVCDVTLHLENRQVKRYGGNYSQFEVLRAQ CCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHCEEEEECCCHHHHHCCCHHHHHHHHHH QLELQQSAYEKQQKTIAHLQSFVDRFKAKASKAKQAQSRVKALEKMERIAPAHIASPFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCEEE EFRTPDSAPNPMLVMENVRCGYRADDGGEIPIVERVALSIQNGQRIGLLGANGQGKSTLI EEECCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHEECCCCEEEEEECCCCCHHHHH KTLAGTLAPLSGELRTGRGLTIGYFAQHQLETLREDDSALAHLARLAPDTREQELRDFLG HHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHC GFNFSGEMATAPIAPFSGGEKARLALALIIWRKPNLLLLDEPTNHLDLETRHALTMALAQ CCCCCCCCCCCCCCCCCCCCHHEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHH FEGTLILVSHDRHLLRATTDQFMLVAKHRLQPFDGDLDDYRDWLLQHAAEQRAAAKAACG HCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC PAGDADGGAPAVNRKDQKRQEAEARQRLSQLKKPLQARITKIEKEMERLHAQKAELDAFV CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADPASYAADQKARLTDAIRKLGDVNGQLETLEADWLGAQDELEKIG CCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]