| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812742
Identifier: 237812742
GI number: 237812742
Start: 2434657
End: 2435859
Strand: Direct
Name: 237812742
Synonym: GBP346_A2495
Alternate gene names: NA
Gene position: 2434657-2435859 (Clockwise)
Preceding gene: 237812741
Following gene: 237812743
Centisome position: 59.4
GC content: 65.67
Gene sequence:
>1203_bases ATGGAAGGCTTCATCACCGATTGGCTGAACCTCGCGATCCGCTGGCTGCACGTCGTCGCCGCGATCGCGTGGATCGGCGA GTCGTTCTACTTCGTCGCGCTCGACAACAGTCTCAAGCCGCCGCAGGACGCGCAACTGAAGTCGCGCGGCGTGTTCGGCG AGCTGTGGCACGTGCACGGCGGCGGCTTCTACAACATGCAGAAGTACCTCGTCGCGCCGCCCGAGATGCCCGAGGACCTG CATTGGTCGAAGTGGCCGTCGTACACGACGTGGATGTCCGGCTTCGGCCTGTTCTTCGTGCTGTACCTGCTCGCGCCGAA CACGTATCTGATCGACCGCAACGTGCTCGACATGGGGCCCGTCGTCGCGGTCGCGTCCGCGCTCGGCTTTCTGCTCGCCG GCTGGATCGTCTACGACTGCGCATGCCGCCTGCTCGGCGGCCGCGACAAGCTGCTCGGCGTGTTCGTCGGCCTCTACGTG ATCGCCGCGGCGTACATCGCGTGCCACGTGTTCTCCGGCCGCGCCGCATATCTGATCGTCGGCGCGATGCTCGCGACGAT CATGACGGCCAACGTGTTCTTCGTGATCATCCCCGGCCAGCGCAAGATGGTCGACAAGCTGCTCAAGGGCGAAACGCCCG ATCCGATCTACGGCAAGCGCGGCAAGCAGCGCTCGGTGCACAACACGTACTTCACGCTGCCCGTGGTGTTCGCGATGCTG TCGAATCACTACGCGATGACGTACGCGAACCGGTACAACTGGATCGTGCTCGTCGTCATCATGCTCGCCGGCGCGCTGAT TCGCCAGTTCTTCGTGATGCGGCACCGCGGCCAGCAGCTCTGGTATCTGCCGCTCGGCGGCGTCGCGCTGATGCTGCTCG CGCTCGTGACGACGATGCCCCGGCCGATCGCGCCCGAAGCGCGGGCGGCGAACGCGCCGAACGTGCCGAAGCTCGCGATC AACGACATCGCGCCGATCCTGCAGCAGCGCTGCGTCGCGTGCCACTCGGCCAAGCCGACGCTGATGGGCAGCGCGCCGGC CGGCGTGATGTTCGACACGCCCGACGAGATCGCGCGCAACGCGCCGCGAATCTATCAGCAGGCGGTGCAGTTGAAGGCGA TGCCGATCGGCAACGTCACGCACATGACAGATGACGAGCGCACGAAGATCGCCGCGTGGTTCGAAGGCGGCGCGACGAAA TAA
Upstream 100 bases:
>100_bases GTGCCGCTTCTCGTGTCGCCGTGGTCGTACAGCACCTATCGCGGCAGCTGAGCACGCATCGCTGCCCGCCTACGACAACG ATCGACTCAGGAGGAGTTTC
Downstream 100 bases:
>100_bases CGGCGCACCTCGCGTGTCGACGGGCCCGCTTCGGCGGGCCTGTTTTTTTGTCGATCGATGCCTGCCGAGACGCGCGGCGC GTCCCCGGCACGCGTCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Cytochrome C Subfamily; Cytochrome C Region
Number of amino acids: Translated: 400; Mature: 400
Protein sequence:
>400_residues MEGFITDWLNLAIRWLHVVAAIAWIGESFYFVALDNSLKPPQDAQLKSRGVFGELWHVHGGGFYNMQKYLVAPPEMPEDL HWSKWPSYTTWMSGFGLFFVLYLLAPNTYLIDRNVLDMGPVVAVASALGFLLAGWIVYDCACRLLGGRDKLLGVFVGLYV IAAAYIACHVFSGRAAYLIVGAMLATIMTANVFFVIIPGQRKMVDKLLKGETPDPIYGKRGKQRSVHNTYFTLPVVFAML SNHYAMTYANRYNWIVLVVIMLAGALIRQFFVMRHRGQQLWYLPLGGVALMLLALVTTMPRPIAPEARAANAPNVPKLAI NDIAPILQQRCVACHSAKPTLMGSAPAGVMFDTPDEIARNAPRIYQQAVQLKAMPIGNVTHMTDDERTKIAAWFEGGATK
Sequences:
>Translated_400_residues MEGFITDWLNLAIRWLHVVAAIAWIGESFYFVALDNSLKPPQDAQLKSRGVFGELWHVHGGGFYNMQKYLVAPPEMPEDL HWSKWPSYTTWMSGFGLFFVLYLLAPNTYLIDRNVLDMGPVVAVASALGFLLAGWIVYDCACRLLGGRDKLLGVFVGLYV IAAAYIACHVFSGRAAYLIVGAMLATIMTANVFFVIIPGQRKMVDKLLKGETPDPIYGKRGKQRSVHNTYFTLPVVFAML SNHYAMTYANRYNWIVLVVIMLAGALIRQFFVMRHRGQQLWYLPLGGVALMLLALVTTMPRPIAPEARAANAPNVPKLAI NDIAPILQQRCVACHSAKPTLMGSAPAGVMFDTPDEIARNAPRIYQQAVQLKAMPIGNVTHMTDDERTKIAAWFEGGATK >Mature_400_residues MEGFITDWLNLAIRWLHVVAAIAWIGESFYFVALDNSLKPPQDAQLKSRGVFGELWHVHGGGFYNMQKYLVAPPEMPEDL HWSKWPSYTTWMSGFGLFFVLYLLAPNTYLIDRNVLDMGPVVAVASALGFLLAGWIVYDCACRLLGGRDKLLGVFVGLYV IAAAYIACHVFSGRAAYLIVGAMLATIMTANVFFVIIPGQRKMVDKLLKGETPDPIYGKRGKQRSVHNTYFTLPVVFAML SNHYAMTYANRYNWIVLVVIMLAGALIRQFFVMRHRGQQLWYLPLGGVALMLLALVTTMPRPIAPEARAANAPNVPKLAI NDIAPILQQRCVACHSAKPTLMGSAPAGVMFDTPDEIARNAPRIYQQAVQLKAMPIGNVTHMTDDERTKIAAWFEGGATK
Specific function: Unknown
COG id: COG3748
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44428; Mature: 44428
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEGFITDWLNLAIRWLHVVAAIAWIGESFYFVALDNSLKPPQDAQLKSRGVFGELWHVHG CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHCCCCHHEEEECC GGFYNMQKYLVAPPEMPEDLHWSKWPSYTTWMSGFGLFFVLYLLAPNTYLIDRNVLDMGP CCEECCHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH VVAVASALGFLLAGWIVYDCACRLLGGRDKLLGVFVGLYVIAAAYIACHVFSGRAAYLIV HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GAMLATIMTANVFFVIIPGQRKMVDKLLKGETPDPIYGKRGKQRSVHNTYFTLPVVFAML HHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH SNHYAMTYANRYNWIVLVVIMLAGALIRQFFVMRHRGQQLWYLPLGGVALMLLALVTTMP HCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCC RPIAPEARAANAPNVPKLAINDIAPILQQRCVACHSAKPTLMGSAPAGVMFDTPDEIARN CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEECCHHHHHCC APRIYQQAVQLKAMPIGNVTHMTDDERTKIAAWFEGGATK CHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCC >Mature Secondary Structure MEGFITDWLNLAIRWLHVVAAIAWIGESFYFVALDNSLKPPQDAQLKSRGVFGELWHVHG CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHCCCCHHEEEECC GGFYNMQKYLVAPPEMPEDLHWSKWPSYTTWMSGFGLFFVLYLLAPNTYLIDRNVLDMGP CCEECCHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH VVAVASALGFLLAGWIVYDCACRLLGGRDKLLGVFVGLYVIAAAYIACHVFSGRAAYLIV HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GAMLATIMTANVFFVIIPGQRKMVDKLLKGETPDPIYGKRGKQRSVHNTYFTLPVVFAML HHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH SNHYAMTYANRYNWIVLVVIMLAGALIRQFFVMRHRGQQLWYLPLGGVALMLLALVTTMP HCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCC RPIAPEARAANAPNVPKLAINDIAPILQQRCVACHSAKPTLMGSAPAGVMFDTPDEIARN CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEECCHHHHHCC APRIYQQAVQLKAMPIGNVTHMTDDERTKIAAWFEGGATK CHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA