| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is yhjG [H]
Identifier: 237812510
GI number: 237812510
Start: 2223574
End: 2226066
Strand: Reverse
Name: yhjG [H]
Synonym: GBP346_A2259
Alternate gene names: 237812510
Gene position: 2226066-2223574 (Counterclockwise)
Preceding gene: 237812514
Following gene: 237812509
Centisome position: 54.31
GC content: 70.12
Gene sequence:
>2493_bases ATGGCGCTCACCCGTACTCTTGGCAAAACGGCGGCGTGGATCGTCGGCATCTTCGCGGTCTTGACCGCGGCGGTCGGCGT GTTCATCTTCACGTTCGACTGGAATCGCGCGAAACCGTGGATCAACGAGCAGGCAAGCGCGTCGATCGGCCGGCCGTTCG AGATCCGCGGCGACATCAAGGTCGGCTGGCGGCGGCCCGACGGCGAGACCGGCTGGCGCGCATGGGTGCCGTGGCCGGTG TTCTCGGCGAGCCGGATCGTGATCGGCAACCCGCCGTGGGCGAAAGCGCCCAATTTCGCGACGCTCGACGAAGCGCGCTT CGAGCTCGCCGTCCTGCCGCTGCTCGCGCACGAGGTCGTGATCCCGACGATCGAACTCGTCAACCCGGCGCTCGACATCG AGCGCCTCGCCGACGGCCGCAACAACTGGACCTTCGAATTCAAGCAGTCTGCCGGCCCGTCGCCCTGGAAGGTGCAGTTG CGCGACTTCGGCTTCGCGAAGGGCACGGTCGTCTATCGCGACGCGATCACGAAAGCCGATCTGAGCGTCGCGGTCGATAC GCTCGGCCAGCCGATTCCGCTCGGCGACGTGCTCCGGCAGCAGGAGGAGACGTCTCGGGCGGCGTCGGCGCAGCGGGTCG GCAAACGCGGCGCGGCGCAATTGGCCGCCAAGGCGCAAGCCCAGATCGCGTCCGACGCGTCGGCGGCGTCGGCCGCCGGG GCGCCGAACGCGAGCGGCGCTGCCGCGGCGAGCGGCGCGTCGGGCGTGAATGCCGCGGCGTCGGCCGCCAAGGTTTCCGG CAATGACCGGTCACGGGCGGCTCGGGCCACGGCGGGCGCGAGCGCTGCGTCGAAGCCGGCCGCCGCGGCCTCCGGCGGGA GCGCCGCGGCGGTTGCCGCCGGCAAGGCTCCCGCAGCGGGCGCGGGCGGGGCGGTTGCTTCCGCCTCCGCGTCGGCCGCA TCTTCCGCTTCGGCCGTCTCGACGAGCGCGGCCGTTTCGGGCGCGAGCGGCGCAAGGGGCGCGAGCGGCGCAAGCGCGGC CTTCGCCGCCGAGCAGCGGTCGGCCGGCCCGACCTACGCGTTCGGCCTGACCGTGAAGGGCCGCTACAAGGGCGTGCCGA TCGACGGCACGGGCAAGGTGGGCGGCGTGCTGTCGCTTCGGGACGCTTCGCGGCCATTCCCGCTGCAGGCCGACGTGAAG GCGGGCGACACGCGCCTCGCGATCGTCGGGACGCTCACCGATCCGGTCCATCTCGCCGCGATCGACCTGCGGCTGTGGCT GCAGGGCTCGAGCATGTCGCACCTGTATCCGCTCACGGGCGTGACCTTGCCCGACACGCCGCCGTACGCGACCGAAGGCC GGCTCATCGGTCGTTTCAAGCGCGCCGCGAGCACGTTCCGTTACGAGAACTTCAACGGCCGCGTCGGCGGCAGCGATCTG CGCGGCACGCTCGTGTACCAGCAGCGCGCGCCGCGGCCGCTCCTGTCCGGCGAGCTCGTGTCGAATCTGCTGCAGTTCTC CGATCTCGCGCCGATCATCGGGGCGGACACGGCCGCGAGCAAGGCGCGGCGCGGCGACACGACGAAGCAGCCGCCCGGCC GCGTGCTGCCCGTCGAGACATTCCGCACCGACCGCTGGCGCGCGCTCGACGCCGACGTCAAGTTCACGGGCCGCAAGCTG ATCAAGAGCGCCGCGCTGCCGATCAGCGATCTGTACACGCACATCGTGATGACGGACGGCGTGCTGTCGCTCGAGCCGCT GAAGTTCGGCGTCGCGGGCGGCTCGCTCGCGACCACCGCGCATCTCGACGGCAGCGCCGCGCCGCTGAAGGGCCGCTTCT CGGTCGCCGCGCGGCATCTGAAGCTCAAGCAGCTGTTCCCGACGCAGAAGGTCATGCAGTCCGCGCTCGGCGAGATCAAC GGCGATGCGGCGCTGTCCGCGACGGGCAATTCGCCCGCCGCGCTCGCGGCGACGTCGAACGGCGAAGTGAAGATGCTGAT GACCGATGGCGCGATCAGCCGCCTGTTGATGGAAGCGGCGGGCCTGAACGTCGCCAACGTCCTGTACGAAAAGATGTTCG GCAGCCACGACGTGAAGATCAATTGCGCGGCCGTCGATTTCGTGGCGACCAACGGCTTGCTCGACACGAAGCTGTTCGCG TTCGATACCGACGACGCGCTCATCAACATCGACGGCCCGATCGATCTGCGCAACGAGTCGATGAACCTGAAGGTCCATCC GCATACGAAGGGATTCCGCGTGTTCTCGCTGCGCTCGCCGCTGTACGTGAAGGGGACGTTCAAGAATCCGGACGTCGGGG TCGACGCGGCCGCGCTCGCGTTGCGCGCGGGCGCGATGGTCGGCCTCGGGCTCGTGAATCCGTTCGCGGCGCTGATTCCG CTGATCGCGCCGAGCAATAACCGGGACGTGCCGTGCTCGGAGCTCTTCGCGCAGTTGAAGGCGCCGCAGAAGGCCGCGAA CGCGCGCAAGTGA
Upstream 100 bases:
>100_bases GCGGGTGGCGCAGCATCGTGCGCCATAATAACTGCCAGCGGCAGCGTCGCGCACGCTGCGCGGCACGGCCGATTCAGGAA GAACAACGACGGAATCTGGC
Downstream 100 bases:
>100_bases CCGGTTCGCGGGCTTGCCGGGCGGTTCGAAAGCGTGATTCGCGGGCTGCGGCGAAGGGCGGGGCCGCCCCCGGGGCGGGA GAGCGGTCCCATCGTTGCCG
Product: AsmA family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 830; Mature: 829
Protein sequence:
>830_residues MALTRTLGKTAAWIVGIFAVLTAAVGVFIFTFDWNRAKPWINEQASASIGRPFEIRGDIKVGWRRPDGETGWRAWVPWPV FSASRIVIGNPPWAKAPNFATLDEARFELAVLPLLAHEVVIPTIELVNPALDIERLADGRNNWTFEFKQSAGPSPWKVQL RDFGFAKGTVVYRDAITKADLSVAVDTLGQPIPLGDVLRQQEETSRAASAQRVGKRGAAQLAAKAQAQIASDASAASAAG APNASGAAAASGASGVNAAASAAKVSGNDRSRAARATAGASAASKPAAAASGGSAAAVAAGKAPAAGAGGAVASASASAA SSASAVSTSAAVSGASGARGASGASAAFAAEQRSAGPTYAFGLTVKGRYKGVPIDGTGKVGGVLSLRDASRPFPLQADVK AGDTRLAIVGTLTDPVHLAAIDLRLWLQGSSMSHLYPLTGVTLPDTPPYATEGRLIGRFKRAASTFRYENFNGRVGGSDL RGTLVYQQRAPRPLLSGELVSNLLQFSDLAPIIGADTAASKARRGDTTKQPPGRVLPVETFRTDRWRALDADVKFTGRKL IKSAALPISDLYTHIVMTDGVLSLEPLKFGVAGGSLATTAHLDGSAAPLKGRFSVAARHLKLKQLFPTQKVMQSALGEIN GDAALSATGNSPAALAATSNGEVKMLMTDGAISRLLMEAAGLNVANVLYEKMFGSHDVKINCAAVDFVATNGLLDTKLFA FDTDDALINIDGPIDLRNESMNLKVHPHTKGFRVFSLRSPLYVKGTFKNPDVGVDAAALALRAGAMVGLGLVNPFAALIP LIAPSNNRDVPCSELFAQLKAPQKAANARK
Sequences:
>Translated_830_residues MALTRTLGKTAAWIVGIFAVLTAAVGVFIFTFDWNRAKPWINEQASASIGRPFEIRGDIKVGWRRPDGETGWRAWVPWPV FSASRIVIGNPPWAKAPNFATLDEARFELAVLPLLAHEVVIPTIELVNPALDIERLADGRNNWTFEFKQSAGPSPWKVQL RDFGFAKGTVVYRDAITKADLSVAVDTLGQPIPLGDVLRQQEETSRAASAQRVGKRGAAQLAAKAQAQIASDASAASAAG APNASGAAAASGASGVNAAASAAKVSGNDRSRAARATAGASAASKPAAAASGGSAAAVAAGKAPAAGAGGAVASASASAA SSASAVSTSAAVSGASGARGASGASAAFAAEQRSAGPTYAFGLTVKGRYKGVPIDGTGKVGGVLSLRDASRPFPLQADVK AGDTRLAIVGTLTDPVHLAAIDLRLWLQGSSMSHLYPLTGVTLPDTPPYATEGRLIGRFKRAASTFRYENFNGRVGGSDL RGTLVYQQRAPRPLLSGELVSNLLQFSDLAPIIGADTAASKARRGDTTKQPPGRVLPVETFRTDRWRALDADVKFTGRKL IKSAALPISDLYTHIVMTDGVLSLEPLKFGVAGGSLATTAHLDGSAAPLKGRFSVAARHLKLKQLFPTQKVMQSALGEIN GDAALSATGNSPAALAATSNGEVKMLMTDGAISRLLMEAAGLNVANVLYEKMFGSHDVKINCAAVDFVATNGLLDTKLFA FDTDDALINIDGPIDLRNESMNLKVHPHTKGFRVFSLRSPLYVKGTFKNPDVGVDAAALALRAGAMVGLGLVNPFAALIP LIAPSNNRDVPCSELFAQLKAPQKAANARK >Mature_829_residues ALTRTLGKTAAWIVGIFAVLTAAVGVFIFTFDWNRAKPWINEQASASIGRPFEIRGDIKVGWRRPDGETGWRAWVPWPVF SASRIVIGNPPWAKAPNFATLDEARFELAVLPLLAHEVVIPTIELVNPALDIERLADGRNNWTFEFKQSAGPSPWKVQLR DFGFAKGTVVYRDAITKADLSVAVDTLGQPIPLGDVLRQQEETSRAASAQRVGKRGAAQLAAKAQAQIASDASAASAAGA PNASGAAAASGASGVNAAASAAKVSGNDRSRAARATAGASAASKPAAAASGGSAAAVAAGKAPAAGAGGAVASASASAAS SASAVSTSAAVSGASGARGASGASAAFAAEQRSAGPTYAFGLTVKGRYKGVPIDGTGKVGGVLSLRDASRPFPLQADVKA GDTRLAIVGTLTDPVHLAAIDLRLWLQGSSMSHLYPLTGVTLPDTPPYATEGRLIGRFKRAASTFRYENFNGRVGGSDLR GTLVYQQRAPRPLLSGELVSNLLQFSDLAPIIGADTAASKARRGDTTKQPPGRVLPVETFRTDRWRALDADVKFTGRKLI KSAALPISDLYTHIVMTDGVLSLEPLKFGVAGGSLATTAHLDGSAAPLKGRFSVAARHLKLKQLFPTQKVMQSALGEING DAALSATGNSPAALAATSNGEVKMLMTDGAISRLLMEAAGLNVANVLYEKMFGSHDVKINCAAVDFVATNGLLDTKLFAF DTDDALINIDGPIDLRNESMNLKVHPHTKGFRVFSLRSPLYVKGTFKNPDVGVDAAALALRAGAMVGLGLVNPFAALIPL IAPSNNRDVPCSELFAQLKAPQKAANARK
Specific function: Unknown
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI226510981, Length=471, Percent_Identity=47.9830148619958, Blast_Score=460, Evalue=1e-130,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007844 [H]
Pfam domain/function: PF05170 AsmA [H]
EC number: NA
Molecular weight: Translated: 86089; Mature: 85958
Theoretical pI: Translated: 10.51; Mature: 10.51
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALTRTLGKTAAWIVGIFAVLTAAVGVFIFTFDWNRAKPWINEQASASIGRPFEIRGDIK CCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCEE VGWRRPDGETGWRAWVPWPVFSASRIVIGNPPWAKAPNFATLDEARFELAVLPLLAHEVV EEEECCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHEEHHHHHHHHHH IPTIELVNPALDIERLADGRNNWTFEFKQSAGPSPWKVQLRDFGFAKGTVVYRDAITKAD HHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCHHH LSVAVDTLGQPIPLGDVLRQQEETSRAASAQRVGKRGAAQLAAKAQAQIASDASAASAAG HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC APNASGAAAASGASGVNAAASAAKVSGNDRSRAARATAGASAASKPAAAASGGSAAAVAA CCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC GKAPAAGAGGAVASASASAASSASAVSTSAAVSGASGARGASGASAAFAAEQRSAGPTYA CCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEE FGLTVKGRYKGVPIDGTGKVGGVLSLRDASRPFPLQADVKAGDTRLAIVGTLTDPVHLAA EEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCEEEEEEEECCCCEEEEE IDLRLWLQGSSMSHLYPLTGVTLPDTPPYATEGRLIGRFKRAASTFRYENFNGRVGGSDL EEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCC RGTLVYQQRAPRPLLSGELVSNLLQFSDLAPIIGADTAASKARRGDTTKQPPGRVLPVET CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHCCCHHHHHHHCCCCCCCCCCCEEEHHH FRTDRWRALDADVKFTGRKLIKSAALPISDLYTHIVMTDGVLSLEPLKFGVAGGSLATTA CCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHEECCCEEECCEEEEECCCCEEEEE HLDGSAAPLKGRFSVAARHLKLKQLFPTQKVMQSALGEINGDAALSATGNSPAALAATSN ECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECC GEVKMLMTDGAISRLLMEAAGLNVANVLYEKMFGSHDVKINCAAVDFVATNGLLDTKLFA CCEEEEEECHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEEEEEECCCEECEEEE FDTDDALINIDGPIDLRNESMNLKVHPHTKGFRVFSLRSPLYVKGTFKNPDVGVDAAALA EECCCEEEEECCCEEECCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHH LRAGAMVGLGLVNPFAALIPLIAPSNNRDVPCSELFAQLKAPQKAANARK HHHHHHEEHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHCCCHHHHCCCC >Mature Secondary Structure ALTRTLGKTAAWIVGIFAVLTAAVGVFIFTFDWNRAKPWINEQASASIGRPFEIRGDIK CCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCEE VGWRRPDGETGWRAWVPWPVFSASRIVIGNPPWAKAPNFATLDEARFELAVLPLLAHEVV EEEECCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHEEHHHHHHHHHH IPTIELVNPALDIERLADGRNNWTFEFKQSAGPSPWKVQLRDFGFAKGTVVYRDAITKAD HHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCHHH LSVAVDTLGQPIPLGDVLRQQEETSRAASAQRVGKRGAAQLAAKAQAQIASDASAASAAG HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC APNASGAAAASGASGVNAAASAAKVSGNDRSRAARATAGASAASKPAAAASGGSAAAVAA CCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC GKAPAAGAGGAVASASASAASSASAVSTSAAVSGASGARGASGASAAFAAEQRSAGPTYA CCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEE FGLTVKGRYKGVPIDGTGKVGGVLSLRDASRPFPLQADVKAGDTRLAIVGTLTDPVHLAA EEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCEEEEEEEECCCCEEEEE IDLRLWLQGSSMSHLYPLTGVTLPDTPPYATEGRLIGRFKRAASTFRYENFNGRVGGSDL EEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCC RGTLVYQQRAPRPLLSGELVSNLLQFSDLAPIIGADTAASKARRGDTTKQPPGRVLPVET CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHCCCHHHHHHHCCCCCCCCCCCEEEHHH FRTDRWRALDADVKFTGRKLIKSAALPISDLYTHIVMTDGVLSLEPLKFGVAGGSLATTA CCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHEECCCEEECCEEEEECCCCEEEEE HLDGSAAPLKGRFSVAARHLKLKQLFPTQKVMQSALGEINGDAALSATGNSPAALAATSN ECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECC GEVKMLMTDGAISRLLMEAAGLNVANVLYEKMFGSHDVKINCAAVDFVATNGLLDTKLFA CCEEEEEECHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEEEEEECCCEECEEEE FDTDDALINIDGPIDLRNESMNLKVHPHTKGFRVFSLRSPLYVKGTFKNPDVGVDAAALA EECCCEEEEECCCEEECCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHH LRAGAMVGLGLVNPFAALIPLIAPSNNRDVPCSELFAQLKAPQKAANARK HHHHHHEEHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]