| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is yeiH [C]
Identifier: 237812482
GI number: 237812482
Start: 2190829
End: 2191899
Strand: Direct
Name: yeiH [C]
Synonym: GBP346_A2231
Alternate gene names: 237812482
Gene position: 2190829-2191899 (Clockwise)
Preceding gene: 237812480
Following gene: 237812483
Centisome position: 53.45
GC content: 72.18
Gene sequence:
>1071_bases ATGTCCACGCTCACCTCCCCCCCGCTCAGCGTCGCCGCGCCTTCGATGCGCGGGCGGCTCAACGGCGTTCTGTTCGTCGG CCTCTTCGCGCTCGCCGTCACGAGCGTCGCGCAACTGCCCGCCGTCGCGCATCTCGGCCTGAGCCCGCTCATCGTCGGCA TCGTCGCGGGCGCGCTGTACGGCAATCTGCTGCGCGAAGGCATGCCCGCGAGCTGGGCGGCCGGCGTCGATTTCTCCGCG CGCAAGCTGCTGCGCATCGCGGTGGCGTTCTTCGGGCTGCGCGTGAGCCTGCAGGAAATCGCGCAGGTCGGCGTGCCGGG GCTCGCGGTGTCGGCGCTCGTCGTTGCGAGCACGCTCGCCGTCGGCACCTGGGCCGGCATCAGGCTGATGAAGCTCGACC GCGACACCGCGCTGCTGACCGCCGCCGGCAGCGCGATCTGCGGCGCGGCCGCGGTGCTCGCGTTCGAATCGGCGCTGCGC TCGAAGCCGCACCAGAGCGCGATGGCGGTCGGCAGCGTCGTGCTGTTCGGCACGCTGTCGATGTTCGCGTATCCGCTCGC GTACCGCGCCGGCTGGCTGCATCTCGATGCGACGGGCCTCGGCCTCTTCTTCGGCGGCACGATCCACGAGGTCGCGCAGG TGGTGGGCGCGGCGAGCGACGTCGGCCCGGAAGTCGCGCGCGTCGCGACGATCGTCAAGATGACCCGCGTGATGCTGCTC GTGCCGGTGCTGCTCGTGCTCGGCGCGTGGCTCGCCCGCTCGGCGCGGCGCTCGACGGCGGCCGGCCGCGGCGCGCCGCG CAAGCTCGCGGTGCCGTGGTTCGCGCTCGGCTTTCTCGGCTTCGTCATCGTGAATTCGCTGCAGATGCTGCCCGCCGCCG CGATCGGCACGCTCAACGCGCTCGACACGTTCGCGCTGACGATGGCGATGACGGCGCTCGGCATCGAGACGCGGATGTCG CAGATCCGCGCGGCCGGCCCCCGCGCGCTGATGACGGGCCTCATCCTGTATGCGTGGCTCGTCTTCGGCGGCTATGCGAT CGTCTGGGCGACGCAGCGCTGGCTGGGCTGA
Upstream 100 bases:
>100_bases TATCGGATTTCCGGATATTTTACGCGACAAATGACGATTTTTCATATCGATATATTCATTTTAGGATTAGGCCCATCGTC ACCCGAAAAAGAACGAAGCC
Downstream 100 bases:
>100_bases ACCGCCGCCCGCCTTGCCGCGCCGCCGCGCCGCGTATGCCGGGTCCGCCCCGCGCCCGCGGCGCAATGCTATTCTTCCGC TCGATTTCATCCGCCGAACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MSTLTSPPLSVAAPSMRGRLNGVLFVGLFALAVTSVAQLPAVAHLGLSPLIVGIVAGALYGNLLREGMPASWAAGVDFSA RKLLRIAVAFFGLRVSLQEIAQVGVPGLAVSALVVASTLAVGTWAGIRLMKLDRDTALLTAAGSAICGAAAVLAFESALR SKPHQSAMAVGSVVLFGTLSMFAYPLAYRAGWLHLDATGLGLFFGGTIHEVAQVVGAASDVGPEVARVATIVKMTRVMLL VPVLLVLGAWLARSARRSTAAGRGAPRKLAVPWFALGFLGFVIVNSLQMLPAAAIGTLNALDTFALTMAMTALGIETRMS QIRAAGPRALMTGLILYAWLVFGGYAIVWATQRWLG
Sequences:
>Translated_356_residues MSTLTSPPLSVAAPSMRGRLNGVLFVGLFALAVTSVAQLPAVAHLGLSPLIVGIVAGALYGNLLREGMPASWAAGVDFSA RKLLRIAVAFFGLRVSLQEIAQVGVPGLAVSALVVASTLAVGTWAGIRLMKLDRDTALLTAAGSAICGAAAVLAFESALR SKPHQSAMAVGSVVLFGTLSMFAYPLAYRAGWLHLDATGLGLFFGGTIHEVAQVVGAASDVGPEVARVATIVKMTRVMLL VPVLLVLGAWLARSARRSTAAGRGAPRKLAVPWFALGFLGFVIVNSLQMLPAAAIGTLNALDTFALTMAMTALGIETRMS QIRAAGPRALMTGLILYAWLVFGGYAIVWATQRWLG >Mature_355_residues STLTSPPLSVAAPSMRGRLNGVLFVGLFALAVTSVAQLPAVAHLGLSPLIVGIVAGALYGNLLREGMPASWAAGVDFSAR KLLRIAVAFFGLRVSLQEIAQVGVPGLAVSALVVASTLAVGTWAGIRLMKLDRDTALLTAAGSAICGAAAVLAFESALRS KPHQSAMAVGSVVLFGTLSMFAYPLAYRAGWLHLDATGLGLFFGGTIHEVAQVVGAASDVGPEVARVATIVKMTRVMLLV PVLLVLGAWLARSARRSTAAGRGAPRKLAVPWFALGFLGFVIVNSLQMLPAAAIGTLNALDTFALTMAMTALGIETRMSQ IRAAGPRALMTGLILYAWLVFGGYAIVWATQRWLG
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=317, Percent_Identity=38.4858044164038, Blast_Score=215, Evalue=4e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004630 - InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 36918; Mature: 36787
Theoretical pI: Translated: 11.67; Mature: 11.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLTSPPLSVAAPSMRGRLNGVLFVGLFALAVTSVAQLPAVAHLGLSPLIVGIVAGALY CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH GNLLREGMPASWAAGVDFSARKLLRIAVAFFGLRVSLQEIAQVGVPGLAVSALVVASTLA HHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH VGTWAGIRLMKLDRDTALLTAAGSAICGAAAVLAFESALRSKPHQSAMAVGSVVLFGTLS HHHHHCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH MFAYPLAYRAGWLHLDATGLGLFFGGTIHEVAQVVGAASDVGPEVARVATIVKMTRVMLL HHHHHHHHHCCEEEEECCCHHHHHCCHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHH VPVLLVLGAWLARSARRSTAAGRGAPRKLAVPWFALGFLGFVIVNSLQMLPAAAIGTLNA HHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDTFALTMAMTALGIETRMSQIRAAGPRALMTGLILYAWLVFGGYAIVWATQRWLG HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHEEHHHHHCC >Mature Secondary Structure STLTSPPLSVAAPSMRGRLNGVLFVGLFALAVTSVAQLPAVAHLGLSPLIVGIVAGALY CCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH GNLLREGMPASWAAGVDFSARKLLRIAVAFFGLRVSLQEIAQVGVPGLAVSALVVASTLA HHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH VGTWAGIRLMKLDRDTALLTAAGSAICGAAAVLAFESALRSKPHQSAMAVGSVVLFGTLS HHHHHCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH MFAYPLAYRAGWLHLDATGLGLFFGGTIHEVAQVVGAASDVGPEVARVATIVKMTRVMLL HHHHHHHHHCCEEEEECCCHHHHHCCHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHH VPVLLVLGAWLARSARRSTAAGRGAPRKLAVPWFALGFLGFVIVNSLQMLPAAAIGTLNA HHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDTFALTMAMTALGIETRMSQIRAAGPRALMTGLILYAWLVFGGYAIVWATQRWLG HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]