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The map label for this gene is potD-B [H]

Identifier: 237812380

GI number: 237812380

Start: 2104777

End: 2105808

Strand: Reverse

Name: potD-B [H]

Synonym: GBP346_A2128

Alternate gene names: 237812380

Gene position: 2105808-2104777 (Counterclockwise)

Preceding gene: 237812381

Following gene: 237812379

Centisome position: 51.38

GC content: 61.82

Gene sequence:

>1032_bases
ATGAACAGCAAGAGCGTTTTTCGTCAGGCGACGCTGATGGCGGTGTGCGCGACCGCGTTTGCGGCCGCCGGCGCACAAGC
GGCCGATTCGATTGTGTTCACGAGTTGGGGCGGCACGACGCAATCGTCGCAGGACAAGGATTGGGCCAAGCCCTTCACGA
AGGCGACGGGCATCAACGTGATGATGGACGGCCCGACCGACTACGGCAAGCTCAAGGCGATGGTCGATAGCGGCAACGTG
ACCTGGGACGTCGTCGACGTCGAAGGCGATTTCGCTTATGCCGCGCAAAAGGCCGGACTCGTCGAGCCGATCGATTATTC
GGTCGTCAAGAAGGACGAACTAGATCCGCGTTTCGTGTCGCCCGCGGCGGTGGGCAGCTTCTATTACGCTTTCGTGCTCG
GTTTCAACAAAGCGTCGTTCAAGGGGGCGCAGCCGTCGACCTGGGCCGACCTCTTCGACACCAAGCGCTTCCCCGGCAAG
CGCACCTTCTATAAGTGGTCGGCGCCCGGCGTGCTCGAAATCGCGCTGCTGGCCGATGGCGTGCCGGTGAACAAACTCTA
TCCGCTCGATCTCGATCGCGCGTTCAAGAAGCTCGACTCGATCAAGAGCGACATCGTCTGGTGGGGCGGCGGCGCCCAGT
CGCAGCAGTTGCTCGCATCGGGCGAGGCGCCGATCGGCATGTTCTGGAACGGACGTCTGCACGCGCTCGAACAGACGGGC
GTTCCGGTCGGCATCTCCTGGACGCAAAACCTGACGGCCGCTGACATGCTCGTGATTCCGAAGGGCGCGAAACACCGGGC
CGAAGCGATGAAGTACCTCGCCGCTGTCACCAGCGCCGATGCGCAAGCGAAATTCGCCGCCGACACGGGATACGCGCCGA
TCAATATGAAATCGCCTTCGATGATGCCTGCTGCCGTGGCCAAGACGCTGCCCGATCAGTACAAGTCGTCGCAGATCGAT
CTCGACATGAAGTACTGGGCGGATCATCGCGACGAGATCGCGAAGCGCTGGTACGCCTGGCAATCGAAGTAA

Upstream 100 bases:

>100_bases
GAGGCCGGCCGCTTTTTCGCCGCTCAAATGAAGCTACGGCAATGCAATGGGTTCGCGGACATCGTGGTTCGATGATTTAA
GAACTATTCAGGAGACAAGC

Downstream 100 bases:

>100_bases
GCCGTTCGCCAGGCGAGGGGCTGTTGGCGGTTACAACGCCGATGGCCCCGTGCCGCTCCGTCCGAATTGGGAGTCACCAT
GCCTAATGTACTGGGTTCCA

Product: ABC transporter, substrate binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: SPBP [H]

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MNSKSVFRQATLMAVCATAFAAAGAQAADSIVFTSWGGTTQSSQDKDWAKPFTKATGINVMMDGPTDYGKLKAMVDSGNV
TWDVVDVEGDFAYAAQKAGLVEPIDYSVVKKDELDPRFVSPAAVGSFYYAFVLGFNKASFKGAQPSTWADLFDTKRFPGK
RTFYKWSAPGVLEIALLADGVPVNKLYPLDLDRAFKKLDSIKSDIVWWGGGAQSQQLLASGEAPIGMFWNGRLHALEQTG
VPVGISWTQNLTAADMLVIPKGAKHRAEAMKYLAAVTSADAQAKFAADTGYAPINMKSPSMMPAAVAKTLPDQYKSSQID
LDMKYWADHRDEIAKRWYAWQSK

Sequences:

>Translated_343_residues
MNSKSVFRQATLMAVCATAFAAAGAQAADSIVFTSWGGTTQSSQDKDWAKPFTKATGINVMMDGPTDYGKLKAMVDSGNV
TWDVVDVEGDFAYAAQKAGLVEPIDYSVVKKDELDPRFVSPAAVGSFYYAFVLGFNKASFKGAQPSTWADLFDTKRFPGK
RTFYKWSAPGVLEIALLADGVPVNKLYPLDLDRAFKKLDSIKSDIVWWGGGAQSQQLLASGEAPIGMFWNGRLHALEQTG
VPVGISWTQNLTAADMLVIPKGAKHRAEAMKYLAAVTSADAQAKFAADTGYAPINMKSPSMMPAAVAKTLPDQYKSSQID
LDMKYWADHRDEIAKRWYAWQSK
>Mature_343_residues
MNSKSVFRQATLMAVCATAFAAAGAQAADSIVFTSWGGTTQSSQDKDWAKPFTKATGINVMMDGPTDYGKLKAMVDSGNV
TWDVVDVEGDFAYAAQKAGLVEPIDYSVVKKDELDPRFVSPAAVGSFYYAFVLGFNKASFKGAQPSTWADLFDTKRFPGK
RTFYKWSAPGVLEIALLADGVPVNKLYPLDLDRAFKKLDSIKSDIVWWGGGAQSQQLLASGEAPIGMFWNGRLHALEQTG
VPVGISWTQNLTAADMLVIPKGAKHRAEAMKYLAAVTSADAQAKFAADTGYAPINMKSPSMMPAAVAKTLPDQYKSSQID
LDMKYWADHRDEIAKRWYAWQSK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine. Polyamine binding protein [H]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787367, Length=322, Percent_Identity=25.1552795031056, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 37392; Mature: 37392

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKSVFRQATLMAVCATAFAAAGAQAADSIVFTSWGGTTQSSQDKDWAKPFTKATGINV
CCCHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEE
MMDGPTDYGKLKAMVDSGNVTWDVVDVEGDFAYAAQKAGLVEPIDYSVVKKDELDPRFVS
EECCCCCCCCEEEEEECCCEEEEEEEECCCHHHHHHHCCCCCCCCCCEEECCCCCCCEEC
PAAVGSFYYAFVLGFNKASFKGAQPSTWADLFDTKRFPGKRTFYKWSAPGVLEIALLADG
HHHHHHHHEEHHEECCHHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEECC
VPVNKLYPLDLDRAFKKLDSIKSDIVWWGGGAQSQQLLASGEAPIGMFWNGRLHALEQTG
CCCCCEECCCHHHHHHHHHHHHHCEEEECCCCCCHHHHHCCCCCEEEEECCEEEEEHHCC
VPVGISWTQNLTAADMLVIPKGAKHRAEAMKYLAAVTSADAQAKFAADTGYAPINMKSPS
CEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC
MMPAAVAKTLPDQYKSSQIDLDMKYWADHRDEIAKRWYAWQSK
CCHHHHHHHCHHHHCCCCCCEEHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNSKSVFRQATLMAVCATAFAAAGAQAADSIVFTSWGGTTQSSQDKDWAKPFTKATGINV
CCCHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEE
MMDGPTDYGKLKAMVDSGNVTWDVVDVEGDFAYAAQKAGLVEPIDYSVVKKDELDPRFVS
EECCCCCCCCEEEEEECCCEEEEEEEECCCHHHHHHHCCCCCCCCCCEEECCCCCCCEEC
PAAVGSFYYAFVLGFNKASFKGAQPSTWADLFDTKRFPGKRTFYKWSAPGVLEIALLADG
HHHHHHHHEEHHEECCHHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEECC
VPVNKLYPLDLDRAFKKLDSIKSDIVWWGGGAQSQQLLASGEAPIGMFWNGRLHALEQTG
CCCCCEECCCHHHHHHHHHHHHHCEEEECCCCCCHHHHHCCCCCEEEEECCEEEEEHHCC
VPVGISWTQNLTAADMLVIPKGAKHRAEAMKYLAAVTSADAQAKFAADTGYAPINMKSPS
CEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC
MMPAAVAKTLPDQYKSSQIDLDMKYWADHRDEIAKRWYAWQSK
CCHHHHHHHCHHHHCCCCCCEEHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]