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The map label for this gene is ydfH [C]

Identifier: 237812376

GI number: 237812376

Start: 2101165

End: 2101944

Strand: Reverse

Name: ydfH [C]

Synonym: GBP346_A2124

Alternate gene names: 237812376

Gene position: 2101944-2101165 (Counterclockwise)

Preceding gene: 237812377

Following gene: 237812375

Centisome position: 51.28

GC content: 63.46

Gene sequence:

>780_bases
ATGCGCGCGACGCGCGTGTTTTTGTCGAGGCATAGGGCGGGAGACGATATGAGCGCCGCACATTCTTCCCTTAAAGTCGA
GCGTCGGGCGACGACTCTGCGCGAACTCGCGCTAGAGAAGATGCGCACCGCCATTCTCGAAGCGCATTTCCAACCGGGCG
AGCGGCTCGTCGAGCGTTCGTTGTGCGAGGGGCTCGGCGTGAGCCGGACCGTTGTGCGCGAGGTGCTGCGACATCTCGAA
GCTGAGGGGCTCGTCGATTCGATTCCTAGCCAAGGACCGATCGTCGCCGTGATCGATTCCGATACGGCCGCGCAAATCTA
CGAGATTCGCGCTTTGCTCGAAAGCGATGCGGCGATGGCCTGCGCGCGTCAGGCCGACTCCGGTGTGGTGCCCCGGCTTG
CCGAATGCATCACGGGCATAGAGCGCGCATTCGAGCAGCGCGACCATCAGGCAGTCCGAGAGCTGACGACGACGTTCTAC
GAGGCGATGTTCCGTGGCGGCGGAAGGAACGTCGCTTGGGAAATCGTGCAGACATTGAACGCGCGAATCAATCGGTTGCG
CGCGATGACGATTGCATCGGAGGACCGCGGACGGCAAGCCGTCGCGGAGATGAATTTGATACTTGATGCAATCCGCGCCC
ATGACGCGAGGCGCGCTCGTGACGCGGCGACTGCCCACGTGGCACGCGTCGCCGTGATCGCTGCACAACTGTTGCAGCGC
AGCCAGGAGCCGCCGCCGCCGCGTGAACCCAATAAGTCCGCCGGCTGCGCAACGTTCTGA

Upstream 100 bases:

>100_bases
GTTGCCACACCTTGGCAGCAGGAAATTTCGATTCGAATGCCGGCAAGCCATCGCCATGACAGCGGACTATCGATCGGCAC
GCAGGCTTTCGTCGAGTGGG

Downstream 100 bases:

>100_bases
CATTCTCTCCAAAGGCTTTTCATGTATCTCGAACACGCATTGAAGGACCCCTCGCTGTTGAGACATCAAGCGTATATCGG
CGGTGAATGGCAGGCCGCGG

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRATRVFLSRHRAGDDMSAAHSSLKVERRATTLRELALEKMRTAILEAHFQPGERLVERSLCEGLGVSRTVVREVLRHLE
AEGLVDSIPSQGPIVAVIDSDTAAQIYEIRALLESDAAMACARQADSGVVPRLAECITGIERAFEQRDHQAVRELTTTFY
EAMFRGGGRNVAWEIVQTLNARINRLRAMTIASEDRGRQAVAEMNLILDAIRAHDARRARDAATAHVARVAVIAAQLLQR
SQEPPPPREPNKSAGCATF

Sequences:

>Translated_259_residues
MRATRVFLSRHRAGDDMSAAHSSLKVERRATTLRELALEKMRTAILEAHFQPGERLVERSLCEGLGVSRTVVREVLRHLE
AEGLVDSIPSQGPIVAVIDSDTAAQIYEIRALLESDAAMACARQADSGVVPRLAECITGIERAFEQRDHQAVRELTTTFY
EAMFRGGGRNVAWEIVQTLNARINRLRAMTIASEDRGRQAVAEMNLILDAIRAHDARRARDAATAHVARVAVIAAQLLQR
SQEPPPPREPNKSAGCATF
>Mature_259_residues
MRATRVFLSRHRAGDDMSAAHSSLKVERRATTLRELALEKMRTAILEAHFQPGERLVERSLCEGLGVSRTVVREVLRHLE
AEGLVDSIPSQGPIVAVIDSDTAAQIYEIRALLESDAAMACARQADSGVVPRLAECITGIERAFEQRDHQAVRELTTTFY
EAMFRGGGRNVAWEIVQTLNARINRLRAMTIASEDRGRQAVAEMNLILDAIRAHDARRARDAATAHVARVAVIAAQLLQR
SQEPPPPREPNKSAGCATF

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28567; Mature: 28567

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRATRVFLSRHRAGDDMSAAHSSLKVERRATTLRELALEKMRTAILEAHFQPGERLVERS
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LCEGLGVSRTVVREVLRHLEAEGLVDSIPSQGPIVAVIDSDTAAQIYEIRALLESDAAMA
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
CARQADSGVVPRLAECITGIERAFEQRDHQAVRELTTTFYEAMFRGGGRNVAWEIVQTLN
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ARINRLRAMTIASEDRGRQAVAEMNLILDAIRAHDARRARDAATAHVARVAVIAAQLLQR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQEPPPPREPNKSAGCATF
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRATRVFLSRHRAGDDMSAAHSSLKVERRATTLRELALEKMRTAILEAHFQPGERLVERS
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LCEGLGVSRTVVREVLRHLEAEGLVDSIPSQGPIVAVIDSDTAAQIYEIRALLESDAAMA
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
CARQADSGVVPRLAECITGIERAFEQRDHQAVRELTTTFYEAMFRGGGRNVAWEIVQTLN
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ARINRLRAMTIASEDRGRQAVAEMNLILDAIRAHDARRARDAATAHVARVAVIAAQLLQR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQEPPPPREPNKSAGCATF
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]