| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812305
Identifier: 237812305
GI number: 237812305
Start: 2020490
End: 2022211
Strand: Direct
Name: 237812305
Synonym: GBP346_A2053
Alternate gene names: NA
Gene position: 2020490-2022211 (Clockwise)
Preceding gene: 237812304
Following gene: 237812306
Centisome position: 49.3
GC content: 65.51
Gene sequence:
>1722_bases GTGTACATACTAGGCATCAACGCTGCATATCATGAGTCCGCCGCCTGCCTCGTCAAGGACGGCCAGGTGGTGATGGCGAT CGAGGAAGAGCGCCTGAACCGGATCAAGCACGGCAAGCTCTCGACGCCGGAGACGACCGGCCAGTTGCCGTGGAAGGCGA TCCGCAAGTGTCTCGACGCGGCGGGCATCGGCCTCGACGCGTGCGCGCACATCGGCTACTCGTTCAGCCCGGACATCCTG CAGAAGGGCGTCGCGTCGTGGCGCTCGGCGAACGGCGGCGCGCACGCATGGCCGCTCGACAAGGAAAGCTATCAGACGCT CGAGGGCGGGCTGAATTTCGCCGAAGGCGTGCTGTCGTCGCGACGGCAGTTGATCGAGGACGCGGGCTTCGCCGGCGAAT TCCATTTCCTGCCGCACCACGACTGCCACGCGGCGAGCGCGTTCCACGTGTCGCCGTTCGAGAAGGCGGCCGTGCTCGTG GTCGACGGCATCGGCGAATGGGCGAGCACGTCGCTCTATCACGGCGACGGCACGACGCTCAGGAAGGTGCACGATTTCCT GTTCCCGAACTCGCTCGGCTTCGTGTGGGAGAAGCTGTCGAAGTATCTCGGCTTCAGCCAGTACGACGCGTCCAAAGTGA TGGGGCTCGCCGCCTACGGCGACGGCGCGAAGACCATCGAGCTGTTCTCGCGGATCGTCACCGACAAGGAGAACATGAGC GTCGATCTCGCGGTGCTGCGCCACGAATCGCCCGATTTCACGACGCTCGAAGCGCTGTTCGGGCTGCCGCGCCGGCACAC GCCCGTCGATTTCGACACCGACAACTGGCAGGCGTACGTCGACGTCGCCGCGGGGCTGCAACTGCTCACCGAGCAGGTTC TGCTGCACATCCTGCGCAAGTTCGATCGCACGACCTACCGGCACCTGTGCATGGCGGGCGGCGTCGCGCTGAACTGCGCG GCGAACGGTGTGATCGTGCGCGAGAAGCTGTTCGACGACGTGTTCATCCAGCCGGCGTCGAACGACGCGGGCACCGCGAT GGGCGCGGCGTTCCTGATCTGGAATCAGGTGCTCGGCCATCCGCGCGAATACGTGTTCAATCACGCCTATCTCGGCCCCG AGTATTCGGACGGCGAGATCGAGGCGGTGCTGCGGCGCACGAACCTCGCGTACCGGAAAGTCGACATCGAGAAGGAAGTC GCGCAACTGATCGCGAACGGCAGCATCGTCGGCTGGTTCAACGGGCGGATGGAGTGGGGCCCGCGCGCGCTCGGCGGCCG CAGCCTGCTCGCGGACCCGCGCAACAAGGCGGTGCGCGAGCTGATGAACGTGAAGGTCAAGCACCGCGAGCTGTATCGCC CGTTCTGCCCGAGCATCCTCGGCGAGCGCGCGGAAGAGTGGTTCGAGGGCAGCGCGAGCGTCGCGGCCGGCAAGTACATG TTGACGACCTCGCGCGTGCGCGCGGAGAAAGCCGAGCGGATTCCGGCCGTCGTGCACTTCGACGGCACCGTGCGGGCGCA GACGGTGTACGCGCAGGACAATCCGCGCTACCACCGGCTGATCTCCGAGTTCGACGCGCTGACGGGCGTGCCGCTGCTGC TGAACACCTCGTTCAACGATTCGGAGCCGATCGTGTGCACGCCGCAGGATGCGATCAACACGTTCATGAAGACCGACATC GACTATCTGGCGCTCGGCAGCTACCTGATCTCCAAGCATTGA
Upstream 100 bases:
>100_bases GCGTGCCTGACGCGAATGACGGCGCGTTCCGGCTTGCCGCCGGCCGGAACGCGCGCACATCGAGAAGCGGACCATCGAGA CAATCAGAAAGGACGTCACC
Downstream 100 bases:
>100_bases GCGGCGCCCGAGCGCCCGCCGCCGCCCGCCGCCTGCCTCGGAGCGCCGCGTGCCGCCGCGCTCCGGAGGCGGGCGGCGCG GCGCCAACCCGTCTCCCCGT
Product: carbamoyltransferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 573; Mature: 573
Protein sequence:
>573_residues MYILGINAAYHESAACLVKDGQVVMAIEEERLNRIKHGKLSTPETTGQLPWKAIRKCLDAAGIGLDACAHIGYSFSPDIL QKGVASWRSANGGAHAWPLDKESYQTLEGGLNFAEGVLSSRRQLIEDAGFAGEFHFLPHHDCHAASAFHVSPFEKAAVLV VDGIGEWASTSLYHGDGTTLRKVHDFLFPNSLGFVWEKLSKYLGFSQYDASKVMGLAAYGDGAKTIELFSRIVTDKENMS VDLAVLRHESPDFTTLEALFGLPRRHTPVDFDTDNWQAYVDVAAGLQLLTEQVLLHILRKFDRTTYRHLCMAGGVALNCA ANGVIVREKLFDDVFIQPASNDAGTAMGAAFLIWNQVLGHPREYVFNHAYLGPEYSDGEIEAVLRRTNLAYRKVDIEKEV AQLIANGSIVGWFNGRMEWGPRALGGRSLLADPRNKAVRELMNVKVKHRELYRPFCPSILGERAEEWFEGSASVAAGKYM LTTSRVRAEKAERIPAVVHFDGTVRAQTVYAQDNPRYHRLISEFDALTGVPLLLNTSFNDSEPIVCTPQDAINTFMKTDI DYLALGSYLISKH
Sequences:
>Translated_573_residues MYILGINAAYHESAACLVKDGQVVMAIEEERLNRIKHGKLSTPETTGQLPWKAIRKCLDAAGIGLDACAHIGYSFSPDIL QKGVASWRSANGGAHAWPLDKESYQTLEGGLNFAEGVLSSRRQLIEDAGFAGEFHFLPHHDCHAASAFHVSPFEKAAVLV VDGIGEWASTSLYHGDGTTLRKVHDFLFPNSLGFVWEKLSKYLGFSQYDASKVMGLAAYGDGAKTIELFSRIVTDKENMS VDLAVLRHESPDFTTLEALFGLPRRHTPVDFDTDNWQAYVDVAAGLQLLTEQVLLHILRKFDRTTYRHLCMAGGVALNCA ANGVIVREKLFDDVFIQPASNDAGTAMGAAFLIWNQVLGHPREYVFNHAYLGPEYSDGEIEAVLRRTNLAYRKVDIEKEV AQLIANGSIVGWFNGRMEWGPRALGGRSLLADPRNKAVRELMNVKVKHRELYRPFCPSILGERAEEWFEGSASVAAGKYM LTTSRVRAEKAERIPAVVHFDGTVRAQTVYAQDNPRYHRLISEFDALTGVPLLLNTSFNDSEPIVCTPQDAINTFMKTDI DYLALGSYLISKH >Mature_573_residues MYILGINAAYHESAACLVKDGQVVMAIEEERLNRIKHGKLSTPETTGQLPWKAIRKCLDAAGIGLDACAHIGYSFSPDIL QKGVASWRSANGGAHAWPLDKESYQTLEGGLNFAEGVLSSRRQLIEDAGFAGEFHFLPHHDCHAASAFHVSPFEKAAVLV VDGIGEWASTSLYHGDGTTLRKVHDFLFPNSLGFVWEKLSKYLGFSQYDASKVMGLAAYGDGAKTIELFSRIVTDKENMS VDLAVLRHESPDFTTLEALFGLPRRHTPVDFDTDNWQAYVDVAAGLQLLTEQVLLHILRKFDRTTYRHLCMAGGVALNCA ANGVIVREKLFDDVFIQPASNDAGTAMGAAFLIWNQVLGHPREYVFNHAYLGPEYSDGEIEAVLRRTNLAYRKVDIEKEV AQLIANGSIVGWFNGRMEWGPRALGGRSLLADPRNKAVRELMNVKVKHRELYRPFCPSILGERAEEWFEGSASVAAGKYM LTTSRVRAEKAERIPAVVHFDGTVRAQTVYAQDNPRYHRLISEFDALTGVPLLLNTSFNDSEPIVCTPQDAINTFMKTDI DYLALGSYLISKH
Specific function: Unknown
COG id: COG2192
COG function: function code O; Predicted carbamoyl transferase, NodU family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NodU/CmcH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003696 [H]
Pfam domain/function: PF02543 CmcH_NodU [H]
EC number: NA
Molecular weight: Translated: 63542; Mature: 63542
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYILGINAAYHESAACLVKDGQVVMAIEEERLNRIKHGKLSTPETTGQLPWKAIRKCLDA CEEEECCHHHCCCCEEEEECCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH AGIGLDACAHIGYSFSPDILQKGVASWRSANGGAHAWPLDKESYQTLEGGLNFAEGVLSS CCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH RRQLIEDAGFAGEFHFLPHHDCHAASAFHVSPFEKAAVLVVDGIGEWASTSLYHGDGTTL HHHHHHHCCCCCEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCCHHCCCEEECCCCHH RKVHDFLFPNSLGFVWEKLSKYLGFSQYDASKVMGLAAYGDGAKTIELFSRIVTDKENMS HHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCHHHHHHHHHHHCCCCCCE VDLAVLRHESPDFTTLEALFGLPRRHTPVDFDTDNWQAYVDVAAGLQLLTEQVLLHILRK EEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH FDRTTYRHLCMAGGVALNCAANGVIVREKLFDDVFIQPASNDAGTAMGAAFLIWNQVLGH HHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCC PREYVFNHAYLGPEYSDGEIEAVLRRTNLAYRKVDIEKEVAQLIANGSIVGWFNGRMEWG CHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHEEECHHHHHHHHHHCCCEEEEECCCCCCC PRALGGRSLLADPRNKAVRELMNVKVKHRELYRPFCPSILGERAEEWFEGSASVAAGKYM CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCEEE LTTSRVRAEKAERIPAVVHFDGTVRAQTVYAQDNPRYHRLISEFDALTGVPLLLNTSFND EEHHHHHHHHHHCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCC SEPIVCTPQDAINTFMKTDIDYLALGSYLISKH CCCEEECCHHHHHHHHHCCCHHHHHHHHHHCCC >Mature Secondary Structure MYILGINAAYHESAACLVKDGQVVMAIEEERLNRIKHGKLSTPETTGQLPWKAIRKCLDA CEEEECCHHHCCCCEEEEECCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH AGIGLDACAHIGYSFSPDILQKGVASWRSANGGAHAWPLDKESYQTLEGGLNFAEGVLSS CCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH RRQLIEDAGFAGEFHFLPHHDCHAASAFHVSPFEKAAVLVVDGIGEWASTSLYHGDGTTL HHHHHHHCCCCCEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCCHHCCCEEECCCCHH RKVHDFLFPNSLGFVWEKLSKYLGFSQYDASKVMGLAAYGDGAKTIELFSRIVTDKENMS HHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCHHHHHHHHHHHCCCCCCE VDLAVLRHESPDFTTLEALFGLPRRHTPVDFDTDNWQAYVDVAAGLQLLTEQVLLHILRK EEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH FDRTTYRHLCMAGGVALNCAANGVIVREKLFDDVFIQPASNDAGTAMGAAFLIWNQVLGH HHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCC PREYVFNHAYLGPEYSDGEIEAVLRRTNLAYRKVDIEKEVAQLIANGSIVGWFNGRMEWG CHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHEEECHHHHHHHHHHCCCEEEEECCCCCCC PRALGGRSLLADPRNKAVRELMNVKVKHRELYRPFCPSILGERAEEWFEGSASVAAGKYM CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCEEE LTTSRVRAEKAERIPAVVHFDGTVRAQTVYAQDNPRYHRLISEFDALTGVPLLLNTSFND EEHHHHHHHHHHCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCC SEPIVCTPQDAINTFMKTDIDYLALGSYLISKH CCCEEECCHHHHHHHHHCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]