| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
Click here to switch to the map view.
The map label for this gene is 237812074
Identifier: 237812074
GI number: 237812074
Start: 1766715
End: 1768523
Strand: Direct
Name: 237812074
Synonym: GBP346_A1816
Alternate gene names: NA
Gene position: 1766715-1768523 (Clockwise)
Preceding gene: 237812073
Following gene: 237812075
Centisome position: 43.11
GC content: 71.14
Gene sequence:
>1809_bases ATGCCGTTAGCCCGCCGCCGCGCCGAGCGCCGCCCGCCCGCCCGCGGGCGCGGGCCGATCGCGCGCGAGCGCGGCTCGTT CGCGGTCGTCGCGGCGATCTGGATGCTGGTCGCCATCGCCGCGCTCGGCGCGGTCGACATCGGCAACGTGTTCTTCGTGC GGCGCGACTTGCAGCGGGTCGCCGACATGGCCGCGCTCGCCGGCGCGCAGAGAATGGACGATCAGTGCGCGCAGCCGAAC GCGGCGGCCGCCGCGAACGCGCGCTCGAACGGCTTCGATCCGGCGGCGGGCGGCAACACGCTCGCGCTCGCGTGCGGGCG CTGGGATACGCAAAGCAACGCGGGGCCGAGCTACTTCAACGCGGCCGCGACGCCGCTCAACGCGGTGCAGGTGACGGCCA CGCAGAGCGTGCCGTATTTCTTCCTGGGCCCATCGCGCACGGTGAGCGCGACGTCGACCGCGAAGGCGACCAACGTCGAC CAGTTCACGATCGGCACGACGCTCGCGAGCCTGCAGGGCGGCCTCGTGAACAATGTGCTCAATGCGTTGCTCGGCACGAA CCTGGGTTTGAGCGCGCTGTCGTATCAGGCGCTCGCGTCGACGCAGATCAAGATCGGCGACCTGATGGCGGCCGCGAACG TGCTGACCGTCAACGAGCTGCTCGCGACGCAGGTGACGGCCGGACAGTACGCGCAACTGATGCTGACCGCGCTGTCGCGC ACGCAGGTCGTGAACGCGAATCTGCAGGCGAGCGTCGCCGCGCTGCAGGCGATCGCCGGCGCGCATCTCGGCGGCGGGAC ATTCAGGCTCGGCGGCCAGCCGGGCGCGCCCGGCGTGTTCGCGCTCGGGCTGTCCGACACGCAGGCGGCCGCCGACGCGA AGATCAACGTGTTCGACGCGCTGATGGTCGCGGCCGAAGTCGCGGCGGCGGGCAAGCCGGCCGTCGACGTCGCGACGGGG CTGCAGCTCGCGGGCCAGGGCGCGAGGCTGAAGCTGCAGGTCATCGAGCCGCCGACGATCGTGATCGGCGAGGCGGGCAC GGACCCGAAGACGGGCGCGTGGCGCACGCAGGCGAACAATGCGCAGATTCGGTTGTATGTGAGCGTCGATCTCGGCACGA CGGGCTTGTCGCCCACCGGCGTGCTGCTGCCGATCGCGCCGCTCGTGAGCCTCGTGCAGAACCTGATCCAGGTCGATCTG AGCCTGCCGCTCACGCTGCAGGTCGCGACGGGCTCCGCGTGGCTGCAGTCGACGAGCTGCGCGGCGAGCGCCGCCGCGAG CCGCGCGACGCTCGGCGTGCAGCCGGGCCTCGCGAACCTGTGCATCGGCGACGTGCCGACGGATCTCCCCGCGCAGCAGA CATTCGCCTGCAACGTGCCCGCGACGCTCGCGACGCTCGGCGTGCTGAGCGCGCCGCTGCTGCAGGTCAAGTCGGCCGTC GCGCTGCCGGCGGTCGTGCCGAAGGCGAGCGCGGCGACGCTCACGTTCAACGGCGTGGCGGGCGACGCCGACGACTATCA GACGACGAATTCGAACGCGGTGGGCTCGGTGATCGCGAACGCGCTGTCGGGCGCCGCGCAATCGCTGACGGGATCGAACG GCCTTGCGCTCTACGTGCTCGGCGTGTCGGTGCCGGTCGGCACGATACTCAATCCGGTGGTCTCCGTGCTGCTGAACCTG CTCGGCCCCGTGTTGAGCTCGCTCGATCAGGTCGTCGTGCCGCTGTTGAACCTGCTCGGCGTGCAGCTCGGCGCGGCGAC GGTTCACAATCTGGCGCTGACCTGCGGCACCGCGCAAACGGTCTATTGA
Upstream 100 bases:
>100_bases GGATCGGCCGCGGGCATGAGCGGTATGAGCGGCGGGGGCGGCGGGGGCGGCGGCGCGGGCTATTCCCTCGCGCCGGCACC GGGTTCGCAGTGAGGATCGC
Downstream 100 bases:
>100_bases AGATTCACGCATAACGATGAGAAACACGAACGCAATCGAAGGGCTCGATCTGTACGTCTGGGAGGGCAAGGCCGATATCG TCGACCGGGTCGCGCGCTGC
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 602; Mature: 601
Protein sequence:
>602_residues MPLARRRAERRPPARGRGPIARERGSFAVVAAIWMLVAIAALGAVDIGNVFFVRRDLQRVADMAALAGAQRMDDQCAQPN AAAAANARSNGFDPAAGGNTLALACGRWDTQSNAGPSYFNAAATPLNAVQVTATQSVPYFFLGPSRTVSATSTAKATNVD QFTIGTTLASLQGGLVNNVLNALLGTNLGLSALSYQALASTQIKIGDLMAAANVLTVNELLATQVTAGQYAQLMLTALSR TQVVNANLQASVAALQAIAGAHLGGGTFRLGGQPGAPGVFALGLSDTQAAADAKINVFDALMVAAEVAAAGKPAVDVATG LQLAGQGARLKLQVIEPPTIVIGEAGTDPKTGAWRTQANNAQIRLYVSVDLGTTGLSPTGVLLPIAPLVSLVQNLIQVDL SLPLTLQVATGSAWLQSTSCAASAAASRATLGVQPGLANLCIGDVPTDLPAQQTFACNVPATLATLGVLSAPLLQVKSAV ALPAVVPKASAATLTFNGVAGDADDYQTTNSNAVGSVIANALSGAAQSLTGSNGLALYVLGVSVPVGTILNPVVSVLLNL LGPVLSSLDQVVVPLLNLLGVQLGAATVHNLALTCGTAQTVY
Sequences:
>Translated_602_residues MPLARRRAERRPPARGRGPIARERGSFAVVAAIWMLVAIAALGAVDIGNVFFVRRDLQRVADMAALAGAQRMDDQCAQPN AAAAANARSNGFDPAAGGNTLALACGRWDTQSNAGPSYFNAAATPLNAVQVTATQSVPYFFLGPSRTVSATSTAKATNVD QFTIGTTLASLQGGLVNNVLNALLGTNLGLSALSYQALASTQIKIGDLMAAANVLTVNELLATQVTAGQYAQLMLTALSR TQVVNANLQASVAALQAIAGAHLGGGTFRLGGQPGAPGVFALGLSDTQAAADAKINVFDALMVAAEVAAAGKPAVDVATG LQLAGQGARLKLQVIEPPTIVIGEAGTDPKTGAWRTQANNAQIRLYVSVDLGTTGLSPTGVLLPIAPLVSLVQNLIQVDL SLPLTLQVATGSAWLQSTSCAASAAASRATLGVQPGLANLCIGDVPTDLPAQQTFACNVPATLATLGVLSAPLLQVKSAV ALPAVVPKASAATLTFNGVAGDADDYQTTNSNAVGSVIANALSGAAQSLTGSNGLALYVLGVSVPVGTILNPVVSVLLNL LGPVLSSLDQVVVPLLNLLGVQLGAATVHNLALTCGTAQTVY >Mature_601_residues PLARRRAERRPPARGRGPIARERGSFAVVAAIWMLVAIAALGAVDIGNVFFVRRDLQRVADMAALAGAQRMDDQCAQPNA AAAANARSNGFDPAAGGNTLALACGRWDTQSNAGPSYFNAAATPLNAVQVTATQSVPYFFLGPSRTVSATSTAKATNVDQ FTIGTTLASLQGGLVNNVLNALLGTNLGLSALSYQALASTQIKIGDLMAAANVLTVNELLATQVTAGQYAQLMLTALSRT QVVNANLQASVAALQAIAGAHLGGGTFRLGGQPGAPGVFALGLSDTQAAADAKINVFDALMVAAEVAAAGKPAVDVATGL QLAGQGARLKLQVIEPPTIVIGEAGTDPKTGAWRTQANNAQIRLYVSVDLGTTGLSPTGVLLPIAPLVSLVQNLIQVDLS LPLTLQVATGSAWLQSTSCAASAAASRATLGVQPGLANLCIGDVPTDLPAQQTFACNVPATLATLGVLSAPLLQVKSAVA LPAVVPKASAATLTFNGVAGDADDYQTTNSNAVGSVIANALSGAAQSLTGSNGLALYVLGVSVPVGTILNPVVSVLLNLL GPVLSSLDQVVVPLLNLLGVQLGAATVHNLALTCGTAQTVY
Specific function: Unknown
COG id: COG4655
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60703; Mature: 60572
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLARRRAERRPPARGRGPIARERGSFAVVAAIWMLVAIAALGAVDIGNVFFVRRDLQRV CCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ADMAALAGAQRMDDQCAQPNAAAAANARSNGFDPAAGGNTLALACGRWDTQSNAGPSYFN HHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHH AAATPLNAVQVTATQSVPYFFLGPSRTVSATSTAKATNVDQFTIGTTLASLQGGLVNNVL HCCCCCCEEEEEEECCCCEEEECCCCEECCCCCCCCCCCCEEEHHHHHHHHCCHHHHHHH NALLGTNLGLSALSYQALASTQIKIGDLMAAANVLTVNELLATQVTAGQYAQLMLTALSR HHHHCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH TQVVNANLQASVAALQAIAGAHLGGGTFRLGGQPGAPGVFALGLSDTQAAADAKINVFDA HHEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEECCCCHHHCCCCHHHHHH LMVAAEVAAAGKPAVDVATGLQLAGQGARLKLQVIEPPTIVIGEAGTDPKTGAWRTQANN HHHHHHHHHCCCCCHHHHHCHHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCEEEECCC AQIRLYVSVDLGTTGLSPTGVLLPIAPLVSLVQNLIQVDLSLPLTLQVATGSAWLQSTSC CEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCHH AASAAASRATLGVQPGLANLCIGDVPTDLPAQQTFACNVPATLATLGVLSAPLLQVKSAV HHHHHHHHCEECCCCCHHHHEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH ALPAVVPKASAATLTFNGVAGDADDYQTTNSNAVGSVIANALSGAAQSLTGSNGLALYVL HCCHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE GVSVPVGTILNPVVSVLLNLLGPVLSSLDQVVVPLLNLLGVQLGAATVHNLALTCGTAQT EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCC VY CC >Mature Secondary Structure PLARRRAERRPPARGRGPIARERGSFAVVAAIWMLVAIAALGAVDIGNVFFVRRDLQRV CCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ADMAALAGAQRMDDQCAQPNAAAAANARSNGFDPAAGGNTLALACGRWDTQSNAGPSYFN HHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHH AAATPLNAVQVTATQSVPYFFLGPSRTVSATSTAKATNVDQFTIGTTLASLQGGLVNNVL HCCCCCCEEEEEEECCCCEEEECCCCEECCCCCCCCCCCCEEEHHHHHHHHCCHHHHHHH NALLGTNLGLSALSYQALASTQIKIGDLMAAANVLTVNELLATQVTAGQYAQLMLTALSR HHHHCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH TQVVNANLQASVAALQAIAGAHLGGGTFRLGGQPGAPGVFALGLSDTQAAADAKINVFDA HHEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEECCCCHHHCCCCHHHHHH LMVAAEVAAAGKPAVDVATGLQLAGQGARLKLQVIEPPTIVIGEAGTDPKTGAWRTQANN HHHHHHHHHCCCCCHHHHHCHHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCEEEECCC AQIRLYVSVDLGTTGLSPTGVLLPIAPLVSLVQNLIQVDLSLPLTLQVATGSAWLQSTSC CEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCHH AASAAASRATLGVQPGLANLCIGDVPTDLPAQQTFACNVPATLATLGVLSAPLLQVKSAV HHHHHHHHCEECCCCCHHHHEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH ALPAVVPKASAATLTFNGVAGDADDYQTTNSNAVGSVIANALSGAAQSLTGSNGLALYVL HCCHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE GVSVPVGTILNPVVSVLLNLLGPVLSSLDQVVVPLLNLLGVQLGAATVHNLALTCGTAQT EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCC VY CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA