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The map label for this gene is yfdE [H]

Identifier: 237811943

GI number: 237811943

Start: 1619423

End: 1621048

Strand: Reverse

Name: yfdE [H]

Synonym: GBP346_A1683

Alternate gene names: 237811943

Gene position: 1621048-1619423 (Counterclockwise)

Preceding gene: 237811945

Following gene: 237811941

Centisome position: 39.55

GC content: 72.39

Gene sequence:

>1626_bases
GTGCGCCGCGCGCGACACGTCGGCTCGGCGGTGCACGCCGCATCGCGCAAACGCAGGCGAGCCGTGAGCGAGGAGCGGCG
CTTGCCGGGCGTTGGGCGCGTTGGGCGCGTCGGGCGCGTCGGGCGCGTCGGGCGCGGCGGGTGCGTCGGGCGCGTCGGGT
GCGTCGGGTGCGTCGGGTGCGTCGGGTGCGTCGGGCGCGGCGGGTGCGGCGGGTGCGGAAAGCGCGCCCGGCGGCCGCGC
GCGGCTGCGTCGGACCGTCGCCGTTCCGACCGCTCGCGCGACAACCGCGCACGAATCGCTTTAAGATGCGGCGGGAGACG
ATTCACCGAACACGCGCCCGCGCGAACGCGCCGCGAACGGCGCGCCCACCCGAAAAGCGCAACCAACAGAGGAGACAGAT
CGAAGATGGGAGCCCTCAGCCACATCCGCGTCCTGGACCTGAGCCGCGTGCTCGCGGGCCCGTGGTGCGCGCAGACGCTT
GCCGATCTCGGCGCCGACGTGATCAAGGTCGAGCGCCCGGAGTGCGGCGACGACACCCGGCACTGGGGCCCGCCGTACCT
GAAGACGCCGGACGGCGCCGACACCCGCGAAGCCGCGTACTACCTCGCCGCGAACCGCAACAAGCGCTCGGTGACGGTCG
ATATCGCGACGCCCGAGGGCCAGCGGATCATCCGCGAGCTCGCCGCGCAATGCGACGTCGTGCTCGAGAACTACAAGGTC
GGCCAGCTCGCGAAATACGGGCTCGACTACGCGTCGCTCGCGGCCGTGAAGCCCGGCCTCGTCTATTGCTCGGTGACGGG
CTTCGGCCAGACGGGCCCGTACGCGCACCGCGCCGGCTACGACTTCATCATCCAGGGGATGGGCGGCTTCATGAGCATCA
CCGGCGAGCGCGACGGCCTGCCGGGCGGCGGCCCGCAGAAGGCGGGCGTCGCGATCGCCGATCTCGCGACGGGCCTGTAC
TCGACGATCGCGATCCTCGCCGCGCTCGCGCACCGCGACCGCACGGGCGAAGGCCAGCACATCGACATGGCGCTCCTCGA
CGTGCAGGTGGCGCTCCTCGCGAACATGAACACGAACTTCCTCGCGAGCGGCAAGCCGCCCGTGCGCTGGGGCAACGCAC
ATCCGAACATCGTGCCGTACCAGACGTTCGAGACGAGCGACGGCTGGATCATCGTCGCGGTCGGCAACGACGGCCAGTTC
CGCAAGTTCGTCGAGGCGGGCGGGCGCCCCGAGCTCGCCGACGACGAGCGCTTCGCGACGAACCCCGCGCGCGTGCGCCA
CCGCGACACGCTCGTGCCGATCGTCGCCGCGATGACGAAGACGCGCACGAAGCGCGAGTGGCTCGACGCGCTCAAGGCGC
TCGGCGTGCCGTGCGGACCGATCAACGACCTCGCCGAAGTGTTCGACGACGAGCAGGTGCGCGCGCGCGGCATGCAGGTC
GATTTGCCGCATCCGAGCGGCGCGACCGCGAAGCTCGTGCGCAATCCGATCCGGATGAGCGCGACGCCGCCCGACGCGCG
CAGCGCGCCGCCGCTGCTCGGCGAGCACACGGACGCGGTGCTGCGCGACCTGCTGGGTTACGGCGACGCGGCGATCGCCG
CGCTCAGGGACAAGCGCGTCGTCTGA

Upstream 100 bases:

>100_bases
GGACGTTGCGGCGGGCTCGGCGGCGGCTCGGGCCGCGTGCCGCGGGGGCCGCGGCGCGCCGGAGGGGCCGACACATTCGC
TTGGAGAAGCGCCGTGCGCC

Downstream 100 bases:

>100_bases
GCACGGCGCGCGGCCGGCCGCGCGCCCGCCTGCCGTGCGTCGCCGGTAGCGCGCGGCGCTCCTGCAGCCTCCTGAACGAC
GCCGTAAACGGCAACAGGGC

Product: caib/baif family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MRRARHVGSAVHAASRKRRRAVSEERRLPGVGRVGRVGRVGRVGRGGCVGRVGCVGCVGCVGCVGRGGCGGCGKRARRPR
AAASDRRRSDRSRDNRARIALRCGGRRFTEHAPARTRRERRAHPKSATNRGDRSKMGALSHIRVLDLSRVLAGPWCAQTL
ADLGADVIKVERPECGDDTRHWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDIATPEGQRIIRELAAQCDVVLENYKV
GQLAKYGLDYASLAAVKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITGERDGLPGGGPQKAGVAIADLATGLY
STIAILAALAHRDRTGEGQHIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHPNIVPYQTFETSDGWIIVAVGNDGQF
RKFVEAGGRPELADDERFATNPARVRHRDTLVPIVAAMTKTRTKREWLDALKALGVPCGPINDLAEVFDDEQVRARGMQV
DLPHPSGATAKLVRNPIRMSATPPDARSAPPLLGEHTDAVLRDLLGYGDAAIAALRDKRVV

Sequences:

>Translated_541_residues
MRRARHVGSAVHAASRKRRRAVSEERRLPGVGRVGRVGRVGRVGRGGCVGRVGCVGCVGCVGCVGRGGCGGCGKRARRPR
AAASDRRRSDRSRDNRARIALRCGGRRFTEHAPARTRRERRAHPKSATNRGDRSKMGALSHIRVLDLSRVLAGPWCAQTL
ADLGADVIKVERPECGDDTRHWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDIATPEGQRIIRELAAQCDVVLENYKV
GQLAKYGLDYASLAAVKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITGERDGLPGGGPQKAGVAIADLATGLY
STIAILAALAHRDRTGEGQHIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHPNIVPYQTFETSDGWIIVAVGNDGQF
RKFVEAGGRPELADDERFATNPARVRHRDTLVPIVAAMTKTRTKREWLDALKALGVPCGPINDLAEVFDDEQVRARGMQV
DLPHPSGATAKLVRNPIRMSATPPDARSAPPLLGEHTDAVLRDLLGYGDAAIAALRDKRVV
>Mature_541_residues
MRRARHVGSAVHAASRKRRRAVSEERRLPGVGRVGRVGRVGRVGRGGCVGRVGCVGCVGCVGCVGRGGCGGCGKRARRPR
AAASDRRRSDRSRDNRARIALRCGGRRFTEHAPARTRRERRAHPKSATNRGDRSKMGALSHIRVLDLSRVLAGPWCAQTL
ADLGADVIKVERPECGDDTRHWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDIATPEGQRIIRELAAQCDVVLENYKV
GQLAKYGLDYASLAAVKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITGERDGLPGGGPQKAGVAIADLATGLY
STIAILAALAHRDRTGEGQHIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHPNIVPYQTFETSDGWIIVAVGNDGQF
RKFVEAGGRPELADDERFATNPARVRHRDTLVPIVAAMTKTRTKREWLDALKALGVPCGPINDLAEVFDDEQVRARGMQV
DLPHPSGATAKLVRNPIRMSATPPDARSAPPLLGEHTDAVLRDLLGYGDAAIAALRDKRVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=412, Percent_Identity=43.4466019417476, Blast_Score=357, Evalue=2e-98,
Organism=Homo sapiens, GI300863124, Length=438, Percent_Identity=40.8675799086758, Blast_Score=343, Evalue=3e-94,
Organism=Homo sapiens, GI300863126, Length=412, Percent_Identity=37.621359223301, Blast_Score=296, Evalue=4e-80,
Organism=Homo sapiens, GI13376042, Length=438, Percent_Identity=37.2146118721461, Blast_Score=290, Evalue=2e-78,
Organism=Homo sapiens, GI42794625, Length=409, Percent_Identity=28.1173594132029, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI266456254, Length=409, Percent_Identity=28.1173594132029, Blast_Score=123, Evalue=5e-28,
Organism=Homo sapiens, GI266458397, Length=273, Percent_Identity=31.1355311355311, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=31.1355311355311, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI266458395, Length=163, Percent_Identity=31.2883435582822, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI42822893, Length=163, Percent_Identity=31.2883435582822, Blast_Score=83, Evalue=7e-16,
Organism=Escherichia coli, GI87082093, Length=364, Percent_Identity=35.1648351648352, Blast_Score=228, Evalue=8e-61,
Organism=Escherichia coli, GI1788717, Length=425, Percent_Identity=31.7647058823529, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI1786222, Length=417, Percent_Identity=24.7002398081535, Blast_Score=79, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=372, Percent_Identity=24.1935483870968, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=333, Percent_Identity=25.5255255255255, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=47.394540942928, Blast_Score=368, Evalue=1e-102,
Organism=Drosophila melanogaster, GI24585488, Length=341, Percent_Identity=28.4457478005865, Blast_Score=112, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 58291; Mature: 58291

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRARHVGSAVHAASRKRRRAVSEERRLPGVGRVGRVGRVGRVGRGGCVGRVGCVGCVGC
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
VGCVGRGGCGGCGKRARRPRAAASDRRRSDRSRDNRARIALRCGGRRFTEHAPARTRRER
HHHCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCHHHHHHH
RAHPKSATNRGDRSKMGALSHIRVLDLSRVLAGPWCAQTLADLGADVIKVERPECGDDTR
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCC
HWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDIATPEGQRIIRELAAQCDVVLENYKV
CCCCCCCCCCCCCCHHHHEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCH
GQLAKYGLDYASLAAVKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITGERDGL
HHHHHHCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHCCCHHEEECCCCEEEECCCCCCC
PGGGPQKAGVAIADLATGLYSTIAILAALAHRDRTGEGQHIDMALLDVQVALLANMNTNF
CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCE
LASGKPPVRWGNAHPNIVPYQTFETSDGWIIVAVGNDGQFRKFVEAGGRPELADDERFAT
EECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCHHCC
NPARVRHRDTLVPIVAAMTKTRTKREWLDALKALGVPCGPINDLAEVFDDEQVRARGMQV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHCCCEE
DLPHPSGATAKLVRNPIRMSATPPDARSAPPLLGEHTDAVLRDLLGYGDAAIAALRDKRV
ECCCCCCCHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCC
V
C
>Mature Secondary Structure
MRRARHVGSAVHAASRKRRRAVSEERRLPGVGRVGRVGRVGRVGRGGCVGRVGCVGCVGC
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
VGCVGRGGCGGCGKRARRPRAAASDRRRSDRSRDNRARIALRCGGRRFTEHAPARTRRER
HHHCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCHHHHHHH
RAHPKSATNRGDRSKMGALSHIRVLDLSRVLAGPWCAQTLADLGADVIKVERPECGDDTR
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCC
HWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDIATPEGQRIIRELAAQCDVVLENYKV
CCCCCCCCCCCCCCHHHHEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCH
GQLAKYGLDYASLAAVKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITGERDGL
HHHHHHCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHCCCHHEEECCCCEEEECCCCCCC
PGGGPQKAGVAIADLATGLYSTIAILAALAHRDRTGEGQHIDMALLDVQVALLANMNTNF
CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCE
LASGKPPVRWGNAHPNIVPYQTFETSDGWIIVAVGNDGQFRKFVEAGGRPELADDERFAT
EECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCHHCC
NPARVRHRDTLVPIVAAMTKTRTKREWLDALKALGVPCGPINDLAEVFDDEQVRARGMQV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHCCCEE
DLPHPSGATAKLVRNPIRMSATPPDARSAPPLLGEHTDAVLRDLLGYGDAAIAALRDKRV
ECCCCCCCHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]