| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237811814
Identifier: 237811814
GI number: 237811814
Start: 1486962
End: 1489736
Strand: Direct
Name: 237811814
Synonym: GBP346_A1554
Alternate gene names: NA
Gene position: 1486962-1489736 (Clockwise)
Preceding gene: 237811812
Following gene: 237811815
Centisome position: 36.28
GC content: 58.02
Gene sequence:
>2775_bases GTGAGCATCAGTAACAACAATACCACTGTTCGGTACTCGGTCGATGCGTCTGGCGTACAGGCCGGTGTAAATCAAATCCG GGCAGCAAACGCCCAGCTTAACGCATCGCAGATCGAAGTATTCCGCAGGCAGGAAGCCGTTACGCAGGCAATGAGAGAAG CCGCCAGCAACGGCTACAACCTCACCGCACGCGAAGCAAAGAAGCTCGTAGACCAGTACGACCGACTCCAGGCCACAGCA GGCAAGACGCGCCTGGAAATGCTCAACCAACAAGCCGCCGCGCGAGGCGTTACTCAGGCATTTGCAGCGCAGGCAGCGGC TATTGCGGATGCATCGAAGAAAACGCACGAACTCAACTTGAACAGTGTTGGTGCACGGCGCGAAATGATGGTCCTCGCTC ACGAAGCCGCAACAGGCAGTTGGAAGAACTTCGCCGGTTCCATGATGGTGATGGCGGAGCAGGTCGACGCTATGAAGTAC GCCACGCACCCATTGGCTTTGGGGCTCGCGGCGGCCGGTACGGCAGCTTACGCGTTTTACAAGGGCATTTCCAACGCCAA CGCACAGTACAGGGCGTTTAACGACGCGATGAACTCCACGGGCGGCTACGCGCAACAGACACGGGAATCCATCCAGGGGC TTGCGGAGGACTTGTCCAAGCGGTTCGGTGTCGGTATCAGCGCGGCGACGAACGGGCTTAATCAACTGGTGGCGACGGGT CGCGTAACTGCTGATATTTTCCCGCAGGTTGGGGCCGTGGCGTTGGCGATGTCGAAGTCCTCGGGAGAGGCATTCGATAA GACCGTGGAATCGCTCTTGAAGCAGCAGGACGAGGTTAAGCGCGCGGCGGAGGAGTACCAACGCACGCACCACTCGATGT CAGACGCCAACATGGCGCTTATCGAGTCTCTTGAAAAGACGGGCCAAAAGCATGAAGCGTTCAAGATTCTCATCCAGCAG CAGTTGGCCGATATCGAGCGCGAAACCAAGGCCAGCACGGAGCATCAGGCAGGATTCTGGGATAACGTTACAGCCTCAAT GCAACGCTATTCGCGCGCGCTTGCTGGTAAGTCCACTGATCTCGACATCCTCAACGACCTCAAGTCGAAGCAAGCCGCCC AACTTGGCGGGCGTATGCCGGGGGACTACACGGATTACGGCCCGCTGATTGCCGCTCAACAGAAGATCGTTGACGCGAAC AAGGCCAGTCAAGAGGCCGCCGCTAGAGAAGCTGCGGATAAGGCAGCATTGGCCGATTCGCTCCGGACGGTGACGGCCGA GTACGAGCGCACGAAGTCAGCGCAGCAACACCTTAGCGATGCCGTAAAGCACGATAACGCGGTCATTGACACGCGTATTG CGTTGCTGACGAAGCAGGGGAAGATGACCGATTCCGTGCGGGCGCAGCTTGAAGCCCAGCGAAAGCAGATGATCGCCTTC GATACTGAACACATCACCCCGACTCGGAAACACGGTAGCGGTTCCGCCATCGCGGAGATGAACGCCGAGACTCAGACGGG AATGGCAATTCGGCAATTGATTGAGCAGCAGGCGGAGAAGCAGTTACAGGCGCAGCGCCAGCTAGGCGTGATTGACGCCG AGACGTATTACCGCAGGCTTACCGACCTGCAAAAATCCGCTCTGAACGACCAAATTGCACTTGCGAGCAGACGCGCCGAT GTACTTCGATCTTCGTCAGACAAGAGGGCCTACACGGAAGCTGCGGCGGCAGTTGAAAAACTCCAGCTTCAGCAGAAGGG CTTGGATACGAGTCTGCAAGATACGTTGACGGGTCTGTCGCAGCGACGTGACATCGATGTGCGCCGGTACGTCATGGGCC TGGGCCAGATGAATACGCAGCAGGAGGATGCGTACCAATATCAGGACACAACCCGCAACATGACCGCACGGGCCAAGGCC GAATTCGACGCACGGTACGCGTTGCAACAGCAGTATCAGCAGCGCGTTCGGCAGTTGGTCGAACAATACGCGCTCGATCC TACCTCGGATATGAAGCAATACGCGGAAAAACTCCGAGCGGAACAGGCGTATCTCGCGGAGCGTAGCGCAGGAATGGAAC GATTCTTTGTCCGTGAGGAGGCGCGGCGTAATAGCTTCGCGGCTCAGATGAAAGACGGTCTATTGTCTCTCGGCGGTGAC GCCATGACTAACGCGGAGCTTGCCCGGACTGCCCTTGTAACTGCGTGGCAGGATTCGCAGAGCGCTTTGGAGCAATTCAT TACGAGCGGCGAGGGAAATTTCAAGAAGTTCACGGCGAGCATTCTGGGCGACCTTGCGAAAATCGCGTTGCGCCAAGCCG AAGTGTTCGCGATCCAGAGCATCAGCAGTTCGTTCGGCTCATTCTTTAGCGAGGGCGGCCCGGTGCTGCACCGCGCAGGC GGCGGCCCCATCGCCGGCCCAGGCACAACGACCAGTGACAGCATTCCCGCGATGCTTTCGAACGGGGAATTCGTCATCAA TGCAGCGTCTACGAGGAAATACCGCAGCCTGCTTGAGTCCATCAACTCGGGCCACATGGCGCACTTTGCGACCGGAGGCA TTGCAAGTTCTCTTGCACCATCTCCGGCCCCTATGTCGGGTGGCGGTGATAGGCCTCACTTTACCGTCAATCTGAACGGA GGGCACGGCGGATTAACTGAGGCTGACGTGGCGTCCCTGGTTACGCAATTCCAGTCGATCGTGGATGTTCAGCTACACAA GCGGATGGCGGAGCAGGGCGGATATGCATACAAGATGAGGTACGGCCTGCTGTAA
Upstream 100 bases:
>100_bases CGAAGCCGTTCATCCGGCCAGCCTTTGAAGCTATGAAGCAGCGGGCGGCGGATCGATCTACAGAGGTAATCCATGCAGCA CTCAACAAGAAAGGAGGTAA
Downstream 100 bases:
>100_bases CTGACCAGTGCCGCGAACCCGTCGAAGCCGGGGGCGGGTTCGTTCTTGATCTTACAGGAATCAACCACTAACAATAAGGA CTGCGTTGCAAAAATCGTTC
Product: putative phage HK97 tail length tape measure-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 924; Mature: 923
Protein sequence:
>924_residues MSISNNNTTVRYSVDASGVQAGVNQIRAANAQLNASQIEVFRRQEAVTQAMREAASNGYNLTAREAKKLVDQYDRLQATA GKTRLEMLNQQAAARGVTQAFAAQAAAIADASKKTHELNLNSVGARREMMVLAHEAATGSWKNFAGSMMVMAEQVDAMKY ATHPLALGLAAAGTAAYAFYKGISNANAQYRAFNDAMNSTGGYAQQTRESIQGLAEDLSKRFGVGISAATNGLNQLVATG RVTADIFPQVGAVALAMSKSSGEAFDKTVESLLKQQDEVKRAAEEYQRTHHSMSDANMALIESLEKTGQKHEAFKILIQQ QLADIERETKASTEHQAGFWDNVTASMQRYSRALAGKSTDLDILNDLKSKQAAQLGGRMPGDYTDYGPLIAAQQKIVDAN KASQEAAAREAADKAALADSLRTVTAEYERTKSAQQHLSDAVKHDNAVIDTRIALLTKQGKMTDSVRAQLEAQRKQMIAF DTEHITPTRKHGSGSAIAEMNAETQTGMAIRQLIEQQAEKQLQAQRQLGVIDAETYYRRLTDLQKSALNDQIALASRRAD VLRSSSDKRAYTEAAAAVEKLQLQQKGLDTSLQDTLTGLSQRRDIDVRRYVMGLGQMNTQQEDAYQYQDTTRNMTARAKA EFDARYALQQQYQQRVRQLVEQYALDPTSDMKQYAEKLRAEQAYLAERSAGMERFFVREEARRNSFAAQMKDGLLSLGGD AMTNAELARTALVTAWQDSQSALEQFITSGEGNFKKFTASILGDLAKIALRQAEVFAIQSISSSFGSFFSEGGPVLHRAG GGPIAGPGTTTSDSIPAMLSNGEFVINAASTRKYRSLLESINSGHMAHFATGGIASSLAPSPAPMSGGGDRPHFTVNLNG GHGGLTEADVASLVTQFQSIVDVQLHKRMAEQGGYAYKMRYGLL
Sequences:
>Translated_924_residues MSISNNNTTVRYSVDASGVQAGVNQIRAANAQLNASQIEVFRRQEAVTQAMREAASNGYNLTAREAKKLVDQYDRLQATA GKTRLEMLNQQAAARGVTQAFAAQAAAIADASKKTHELNLNSVGARREMMVLAHEAATGSWKNFAGSMMVMAEQVDAMKY ATHPLALGLAAAGTAAYAFYKGISNANAQYRAFNDAMNSTGGYAQQTRESIQGLAEDLSKRFGVGISAATNGLNQLVATG RVTADIFPQVGAVALAMSKSSGEAFDKTVESLLKQQDEVKRAAEEYQRTHHSMSDANMALIESLEKTGQKHEAFKILIQQ QLADIERETKASTEHQAGFWDNVTASMQRYSRALAGKSTDLDILNDLKSKQAAQLGGRMPGDYTDYGPLIAAQQKIVDAN KASQEAAAREAADKAALADSLRTVTAEYERTKSAQQHLSDAVKHDNAVIDTRIALLTKQGKMTDSVRAQLEAQRKQMIAF DTEHITPTRKHGSGSAIAEMNAETQTGMAIRQLIEQQAEKQLQAQRQLGVIDAETYYRRLTDLQKSALNDQIALASRRAD VLRSSSDKRAYTEAAAAVEKLQLQQKGLDTSLQDTLTGLSQRRDIDVRRYVMGLGQMNTQQEDAYQYQDTTRNMTARAKA EFDARYALQQQYQQRVRQLVEQYALDPTSDMKQYAEKLRAEQAYLAERSAGMERFFVREEARRNSFAAQMKDGLLSLGGD AMTNAELARTALVTAWQDSQSALEQFITSGEGNFKKFTASILGDLAKIALRQAEVFAIQSISSSFGSFFSEGGPVLHRAG GGPIAGPGTTTSDSIPAMLSNGEFVINAASTRKYRSLLESINSGHMAHFATGGIASSLAPSPAPMSGGGDRPHFTVNLNG GHGGLTEADVASLVTQFQSIVDVQLHKRMAEQGGYAYKMRYGLL >Mature_923_residues SISNNNTTVRYSVDASGVQAGVNQIRAANAQLNASQIEVFRRQEAVTQAMREAASNGYNLTAREAKKLVDQYDRLQATAG KTRLEMLNQQAAARGVTQAFAAQAAAIADASKKTHELNLNSVGARREMMVLAHEAATGSWKNFAGSMMVMAEQVDAMKYA THPLALGLAAAGTAAYAFYKGISNANAQYRAFNDAMNSTGGYAQQTRESIQGLAEDLSKRFGVGISAATNGLNQLVATGR VTADIFPQVGAVALAMSKSSGEAFDKTVESLLKQQDEVKRAAEEYQRTHHSMSDANMALIESLEKTGQKHEAFKILIQQQ LADIERETKASTEHQAGFWDNVTASMQRYSRALAGKSTDLDILNDLKSKQAAQLGGRMPGDYTDYGPLIAAQQKIVDANK ASQEAAAREAADKAALADSLRTVTAEYERTKSAQQHLSDAVKHDNAVIDTRIALLTKQGKMTDSVRAQLEAQRKQMIAFD TEHITPTRKHGSGSAIAEMNAETQTGMAIRQLIEQQAEKQLQAQRQLGVIDAETYYRRLTDLQKSALNDQIALASRRADV LRSSSDKRAYTEAAAAVEKLQLQQKGLDTSLQDTLTGLSQRRDIDVRRYVMGLGQMNTQQEDAYQYQDTTRNMTARAKAE FDARYALQQQYQQRVRQLVEQYALDPTSDMKQYAEKLRAEQAYLAERSAGMERFFVREEARRNSFAAQMKDGLLSLGGDA MTNAELARTALVTAWQDSQSALEQFITSGEGNFKKFTASILGDLAKIALRQAEVFAIQSISSSFGSFFSEGGPVLHRAGG GPIAGPGTTTSDSIPAMLSNGEFVINAASTRKYRSLLESINSGHMAHFATGGIASSLAPSPAPMSGGGDRPHFTVNLNGG HGGLTEADVASLVTQFQSIVDVQLHKRMAEQGGYAYKMRYGLL
Specific function: Unknown
COG id: COG5281
COG function: function code S; Phage-related minor tail protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100425; Mature: 100293
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISNNNTTVRYSVDASGVQAGVNQIRAANAQLNASQIEVFRRQEAVTQAMREAASNGYN CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC LTAREAKKLVDQYDRLQATAGKTRLEMLNQQAAARGVTQAFAAQAAAIADASKKTHELNL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC NSVGARREMMVLAHEAATGSWKNFAGSMMVMAEQVDAMKYATHPLALGLAAAGTAAYAFY CCCCCHHHHHHEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH KGISNANAQYRAFNDAMNSTGGYAQQTRESIQGLAEDLSKRFGVGISAATNGLNQLVATG HCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC RVTADIFPQVGAVALAMSKSSGEAFDKTVESLLKQQDEVKRAAEEYQRTHHSMSDANMAL CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH IESLEKTGQKHEAFKILIQQQLADIERETKASTEHQAGFWDNVTASMQRYSRALAGKSTD HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC LDILNDLKSKQAAQLGGRMPGDYTDYGPLIAAQQKIVDANKASQEAAAREAADKAALADS HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRTVTAEYERTKSAQQHLSDAVKHDNAVIDTRIALLTKQGKMTDSVRAQLEAQRKQMIAF HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC DTEHITPTRKHGSGSAIAEMNAETQTGMAIRQLIEQQAEKQLQAQRQLGVIDAETYYRRL CCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH TDLQKSALNDQIALASRRADVLRSSSDKRAYTEAAAAVEKLQLQQKGLDTSLQDTLTGLS HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH QRRDIDVRRYVMGLGQMNTQQEDAYQYQDTTRNMTARAKAEFDARYALQQQYQQRVRQLV HHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH EQYALDPTSDMKQYAEKLRAEQAYLAERSAGMERFFVREEARRNSFAAQMKDGLLSLGGD HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AMTNAELARTALVTAWQDSQSALEQFITSGEGNFKKFTASILGDLAKIALRQAEVFAIQS HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ISSSFGSFFSEGGPVLHRAGGGPIAGPGTTTSDSIPAMLSNGEFVINAASTRKYRSLLES HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCEEEECHHHHHHHHHHHH INSGHMAHFATGGIASSLAPSPAPMSGGGDRPHFTVNLNGGHGGLTEADVASLVTQFQSI HCCCCEEHHCCCCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH VDVQLHKRMAEQGGYAYKMRYGLL HHHHHHHHHHHHCCEEEEEECCCC >Mature Secondary Structure SISNNNTTVRYSVDASGVQAGVNQIRAANAQLNASQIEVFRRQEAVTQAMREAASNGYN CCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC LTAREAKKLVDQYDRLQATAGKTRLEMLNQQAAARGVTQAFAAQAAAIADASKKTHELNL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC NSVGARREMMVLAHEAATGSWKNFAGSMMVMAEQVDAMKYATHPLALGLAAAGTAAYAFY CCCCCHHHHHHEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH KGISNANAQYRAFNDAMNSTGGYAQQTRESIQGLAEDLSKRFGVGISAATNGLNQLVATG HCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC RVTADIFPQVGAVALAMSKSSGEAFDKTVESLLKQQDEVKRAAEEYQRTHHSMSDANMAL CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH IESLEKTGQKHEAFKILIQQQLADIERETKASTEHQAGFWDNVTASMQRYSRALAGKSTD HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC LDILNDLKSKQAAQLGGRMPGDYTDYGPLIAAQQKIVDANKASQEAAAREAADKAALADS HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRTVTAEYERTKSAQQHLSDAVKHDNAVIDTRIALLTKQGKMTDSVRAQLEAQRKQMIAF HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC DTEHITPTRKHGSGSAIAEMNAETQTGMAIRQLIEQQAEKQLQAQRQLGVIDAETYYRRL CCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH TDLQKSALNDQIALASRRADVLRSSSDKRAYTEAAAAVEKLQLQQKGLDTSLQDTLTGLS HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH QRRDIDVRRYVMGLGQMNTQQEDAYQYQDTTRNMTARAKAEFDARYALQQQYQQRVRQLV HHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH EQYALDPTSDMKQYAEKLRAEQAYLAERSAGMERFFVREEARRNSFAAQMKDGLLSLGGD HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AMTNAELARTALVTAWQDSQSALEQFITSGEGNFKKFTASILGDLAKIALRQAEVFAIQS HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ISSSFGSFFSEGGPVLHRAGGGPIAGPGTTTSDSIPAMLSNGEFVINAASTRKYRSLLES HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCEEEECHHHHHHHHHHHH INSGHMAHFATGGIASSLAPSPAPMSGGGDRPHFTVNLNGGHGGLTEADVASLVTQFQSI HCCCCEEHHCCCCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH VDVQLHKRMAEQGGYAYKMRYGLL HHHHHHHHHHHHCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA