| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237811632
Identifier: 237811632
GI number: 237811632
Start: 1318072
End: 1319403
Strand: Direct
Name: 237811632
Synonym: GBP346_A1369
Alternate gene names: NA
Gene position: 1318072-1319403 (Clockwise)
Preceding gene: 237811631
Following gene: 237811633
Centisome position: 32.16
GC content: 68.69
Gene sequence:
>1332_bases ATGCGCTGCCCGCGCGGCGCGGCGCGCGACACGCGGCATCCGGCGCGTGTCGTTCGTCCGTCCTTTCATCGCATCACGCA TCCGCCACCCATGGTTCGACACGCATTCGCATCGACGCCGGCGCCGAGCCGCGCCGCTTCCGTCTCCATCCTCCATCCTC GCGCGCTGGCGAGCATCGCGCTCGCCAGCGCCGTTGCATTGATCGCGGCGGGTTGCGGTGAACGCGCGGAGCCGCGGCGC GACGGCGCGACGCCCGTGCTGAGCGCATCGTTCAGGCCGAAGAGCGGGTTCGTCGTGCCCGTCTCGATCGCGGGCAAGAC TTATCACTTTCTCGTCGATACGGGGGCGAGCCATACGGCGATCGACAATCGGCTCGCGCAGTCGATCACGCAGCCGTCGA CCGACGAGCAGATTCCGATCGCGTACCGGACGATGCTCGAAAAAGGCCTGACGACCGCGGACGGCGTGCTGCCGCGCGAG CGCGTGCGTCTCTGGCAGCCGCTGCCGATCGCGCTCGGCAGCTACCAGGTGCCGAGCTTCTATCCGTGGCTCGGTCTCGA TCTATCGTTGCTGTCGCAGGTGCTGGGCACGCAGATCGACGGCATCGTCGGCATCGAGATCTTTCGCCAACTGAGCTGGG TCGCCGACAATCGCAGCGGCACGCTGACCGTCTGGCGCCATCCGCCCGCCGCGCAGCGCTTCGCGCATTGCGTCCCGTAC CAGGACAGCTTCGGGCAGTCGCCCGCCGTGAGCGTCGATTTCCGCGATCGATGGACGATGTTCCGCTTCGATACCGGCGC GCGCTATTCGATCGCCTCCGCGCCGACGCTCGCGTACCTCGCGAGCCACAAGGCCGCGATGCCGCTCGGCGGCACGGTGC CCAGCATGTCGGCGAACGGCGTCGGCGAGTCGCGCGACCATTTCGTGAGCGGACTGTCGTTCGACGGCCGGCCCGTCGGC CGCCTGCGCGTCGCCGAAGGCGGCGGCGACATGCTCGGGATGAACTTTCTCGCGCGGCTCGACCGCTACATGTTCGTGCC GAGCACGATGGAGTTCTGCTACGACGCAGGCCGCTTCACGCAAGACGATCCGCAGCCGCTGCGCACGATCGCGATCCGCT TCGTCGACGGCCGCGTCGAGCTGTTTCACAACCGGCCGGAGGACCTGCGCCGCTACGGCCTCGAAAACGGCGACGTGCTC GTCGAGATCGACGGCAAGCGCGTCGAGGCGCCGGCGATCGACGACGTGCGCGACCGCTTGAGCACCGCGCCCGCGGGTTC GCTCGATATCGTCGTCGAACGAGGAGGTTCGCGCCGCGCCGTGCGGATTTGA
Upstream 100 bases:
>100_bases TGTCCGACCGCGCGCGGGCCGGCGAACAAAAGTCGACAACGCGCGGCCGCGCGTTTCTATAGAATCGTCGATCCTTACAT ATCGTTTTCAGTGAACGGAC
Downstream 100 bases:
>100_bases CGCACGTCATGAACGGGGCCGCGCACGCGGCCGCGGGCGATGCGTTTCACGCGTCGCGACGCCCCCGACACGCGCGCGAT CGACGCGCGTAACGCCTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 443; Mature: 443
Protein sequence:
>443_residues MRCPRGAARDTRHPARVVRPSFHRITHPPPMVRHAFASTPAPSRAASVSILHPRALASIALASAVALIAAGCGERAEPRR DGATPVLSASFRPKSGFVVPVSIAGKTYHFLVDTGASHTAIDNRLAQSITQPSTDEQIPIAYRTMLEKGLTTADGVLPRE RVRLWQPLPIALGSYQVPSFYPWLGLDLSLLSQVLGTQIDGIVGIEIFRQLSWVADNRSGTLTVWRHPPAAQRFAHCVPY QDSFGQSPAVSVDFRDRWTMFRFDTGARYSIASAPTLAYLASHKAAMPLGGTVPSMSANGVGESRDHFVSGLSFDGRPVG RLRVAEGGGDMLGMNFLARLDRYMFVPSTMEFCYDAGRFTQDDPQPLRTIAIRFVDGRVELFHNRPEDLRRYGLENGDVL VEIDGKRVEAPAIDDVRDRLSTAPAGSLDIVVERGGSRRAVRI
Sequences:
>Translated_443_residues MRCPRGAARDTRHPARVVRPSFHRITHPPPMVRHAFASTPAPSRAASVSILHPRALASIALASAVALIAAGCGERAEPRR DGATPVLSASFRPKSGFVVPVSIAGKTYHFLVDTGASHTAIDNRLAQSITQPSTDEQIPIAYRTMLEKGLTTADGVLPRE RVRLWQPLPIALGSYQVPSFYPWLGLDLSLLSQVLGTQIDGIVGIEIFRQLSWVADNRSGTLTVWRHPPAAQRFAHCVPY QDSFGQSPAVSVDFRDRWTMFRFDTGARYSIASAPTLAYLASHKAAMPLGGTVPSMSANGVGESRDHFVSGLSFDGRPVG RLRVAEGGGDMLGMNFLARLDRYMFVPSTMEFCYDAGRFTQDDPQPLRTIAIRFVDGRVELFHNRPEDLRRYGLENGDVL VEIDGKRVEAPAIDDVRDRLSTAPAGSLDIVVERGGSRRAVRI >Mature_443_residues MRCPRGAARDTRHPARVVRPSFHRITHPPPMVRHAFASTPAPSRAASVSILHPRALASIALASAVALIAAGCGERAEPRR DGATPVLSASFRPKSGFVVPVSIAGKTYHFLVDTGASHTAIDNRLAQSITQPSTDEQIPIAYRTMLEKGLTTADGVLPRE RVRLWQPLPIALGSYQVPSFYPWLGLDLSLLSQVLGTQIDGIVGIEIFRQLSWVADNRSGTLTVWRHPPAAQRFAHCVPY QDSFGQSPAVSVDFRDRWTMFRFDTGARYSIASAPTLAYLASHKAAMPLGGTVPSMSANGVGESRDHFVSGLSFDGRPVG RLRVAEGGGDMLGMNFLARLDRYMFVPSTMEFCYDAGRFTQDDPQPLRTIAIRFVDGRVELFHNRPEDLRRYGLENGDVL VEIDGKRVEAPAIDDVRDRLSTAPAGSLDIVVERGGSRRAVRI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48447; Mature: 48447
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: PS00141 ASP_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRCPRGAARDTRHPARVVRPSFHRITHPPPMVRHAFASTPAPSRAASVSILHPRALASIA CCCCCCCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHCCCCCCCCCEEEEECHHHHHHHH LASAVALIAAGCGERAEPRRDGATPVLSASFRPKSGFVVPVSIAGKTYHFLVDTGASHTA HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCEEEEEEECCCCHHH IDNRLAQSITQPSTDEQIPIAYRTMLEKGLTTADGVLPRERVRLWQPLPIALGSYQVPSF HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC YPWLGLDLSLLSQVLGTQIDGIVGIEIFRQLSWVADNRSGTLTVWRHPPAAQRFAHCVPY CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCC QDSFGQSPAVSVDFRDRWTMFRFDTGARYSIASAPTLAYLASHKAAMPLGGTVPSMSANG HHHCCCCCEEEEEECCCEEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCC VGESRDHFVSGLSFDGRPVGRLRVAEGGGDMLGMNFLARLDRYMFVPSTMEFCYDAGRFT CCCCHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHEECCCHHHHHHCCCCCC QDDPQPLRTIAIRFVDGRVELFHNRPEDLRRYGLENGDVLVEIDGKRVEAPAIDDVRDRL CCCCHHHEEEEEEEECCEEEEECCCCHHHHHHCCCCCCEEEEECCCEECCCCHHHHHHHH STAPAGSLDIVVERGGSRRAVRI HCCCCCCEEEEEECCCCCCEECC >Mature Secondary Structure MRCPRGAARDTRHPARVVRPSFHRITHPPPMVRHAFASTPAPSRAASVSILHPRALASIA CCCCCCCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHCCCCCCCCCEEEEECHHHHHHHH LASAVALIAAGCGERAEPRRDGATPVLSASFRPKSGFVVPVSIAGKTYHFLVDTGASHTA HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCEEEEEEECCCCHHH IDNRLAQSITQPSTDEQIPIAYRTMLEKGLTTADGVLPRERVRLWQPLPIALGSYQVPSF HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC YPWLGLDLSLLSQVLGTQIDGIVGIEIFRQLSWVADNRSGTLTVWRHPPAAQRFAHCVPY CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCC QDSFGQSPAVSVDFRDRWTMFRFDTGARYSIASAPTLAYLASHKAAMPLGGTVPSMSANG HHHCCCCCEEEEEECCCEEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCC VGESRDHFVSGLSFDGRPVGRLRVAEGGGDMLGMNFLARLDRYMFVPSTMEFCYDAGRFT CCCCHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHEECCCHHHHHHCCCCCC QDDPQPLRTIAIRFVDGRVELFHNRPEDLRRYGLENGDVLVEIDGKRVEAPAIDDVRDRL CCCCHHHEEEEEEEECCEEEEECCCCHHHHHHCCCCCCEEEEECCCEECCCCHHHHHHHH STAPAGSLDIVVERGGSRRAVRI HCCCCCCEEEEEECCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA