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The map label for this gene is rimM

Identifier: 23502765

GI number: 23502765

Start: 1847412

End: 1847981

Strand: Reverse

Name: rimM

Synonym: BR1915

Alternate gene names: 23502765

Gene position: 1847981-1847412 (Counterclockwise)

Preceding gene: 23502768

Following gene: 23502764

Centisome position: 87.67

GC content: 58.07

Gene sequence:

>570_bases
ATGCCGCGTCCAGAAAATCCGATCCAGCTTGCCGTTATCGGTGCCGCCCATGGCACGCGCGGCGAAGTACGGGTCAAGAC
ATTTACCGGCGATCCGCTGGCCATAGCCGATTACGGCCTGCTTTATGACGAGCAGGGCAAGGCTTACGAAATTCTGGAAG
CCCGCGTTGCGAAAACCGTGGTGATTGTCCGGTTCAAGGGCGTCAACGACCGCAATGCCGCCGAGGCGCTGAACGGGACG
GAGCTTTTCATCGACCGTTCGCAACTGCCGGATGAGGAACTGGACGAAGACGAGTTTTTCCAAACCGACCTGATCGGGCT
TGAGGCCGTGGATGGAGATGGCAAATCCTATGGCGTGGTGAGTGCGATTTTCGATTTCGGTGGTGGCGATCTCATTGAGT
TGAGCGAAAAGGGCAAGCGGCCCATGCTCATTCCTTTCACCGAGGCGGCCGTGCCGGAGATCGATTTCGACAAGGGCATC
ATCAAGGTCGAGCCCCATGCGGCGGGCCTGATCGCCGATGAGCACGATAATCCGCCTCATGAAAGCGGCAAGAAGCCGAA
GAAGCCATGA

Upstream 100 bases:

>100_bases
GCTTTTTGAGAGAGGCTTTCAGGCAAAGTGCATTTTTCTTGGCCTTTTTGCCGGAATTGAGTAAGCGATAGACTGATTAC
AGCCAGAAACAGGGTTCTTC

Downstream 100 bases:

>100_bases
CCGATTTGCCGGAAAAGGAAGGCGGGCGCTTTCATGCCTCCGTGCTGACGCTCTATCCTGAAATGTTTCCGGGGCCTCTT
GGCATCTCTCTTGCCGGGAA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTVVIVRFKGVNDRNAAEALNGT
ELFIDRSQLPDEELDEDEFFQTDLIGLEAVDGDGKSYGVVSAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGI
IKVEPHAAGLIADEHDNPPHESGKKPKKP

Sequences:

>Translated_189_residues
MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTVVIVRFKGVNDRNAAEALNGT
ELFIDRSQLPDEELDEDEFFQTDLIGLEAVDGDGKSYGVVSAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGI
IKVEPHAAGLIADEHDNPPHESGKKPKKP
>Mature_188_residues
PRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTVVIVRFKGVNDRNAAEALNGTE
LFIDRSQLPDEELDEDEFFQTDLIGLEAVDGDGKSYGVVSAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGII
KVEPHAAGLIADEHDNPPHESGKKPKKP

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=174, Percent_Identity=29.3103448275862, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BRUA1 (B2S869)

Other databases:

- EMBL:   CP000887
- RefSeq:   YP_001935752.1
- ProteinModelPortal:   B2S869
- SMR:   B2S869
- GeneID:   6326896
- GenomeReviews:   CP000887_GR
- KEGG:   bmc:BAbS19_I17960
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20554; Mature: 20423

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTV
CCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECEEECCCCCCHHHHHHHHHEEE
VIVRFKGVNDRNAAEALNGTELFIDRSQLPDEELDEDEFFQTDLIGLEAVDGDGKSYGVV
EEEEEECCCCCCHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCEEEEEECCCCCCCCCE
SAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGIIKVEPHAAGLIADEHDNPPH
EEEECCCCCCEEEECCCCCCCEEEEEHHCCCCCCCCCCCEEEECCCCCCEEECCCCCCCC
ESGKKPKKP
CCCCCCCCC
>Mature Secondary Structure 
PRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTV
CCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECEEECCCCCCHHHHHHHHHEEE
VIVRFKGVNDRNAAEALNGTELFIDRSQLPDEELDEDEFFQTDLIGLEAVDGDGKSYGVV
EEEEEECCCCCCHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCEEEEEECCCCCCCCCE
SAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGIIKVEPHAAGLIADEHDNPPH
EEEECCCCCCEEEECCCCCCCEEEEEHHCCCCCCCCCCCEEEECCCCCCEEECCCCCCCC
ESGKKPKKP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA