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The map label for this gene is 23502476

Identifier: 23502476

GI number: 23502476

Start: 1560188

End: 1561600

Strand: Reverse

Name: 23502476

Synonym: BR1613

Alternate gene names: NA

Gene position: 1561600-1560188 (Counterclockwise)

Preceding gene: 23502480

Following gene: 23502475

Centisome position: 74.09

GC content: 62.63

Gene sequence:

>1413_bases
TTGAGCGAGCGCAAGATTTTTGCGGGGCCGCGCATCCGGCGCATTCGCAACGAACGCGGCCTGACCCAGACGGCGATGGC
CGAAGCGCTCGGCATTTCGCCGTCCTATCTCAATCTGATCGAGCGCAACCAGCGGCCGCTTACCGTGCAGCTTCTTTTGA
AGCTTGCGAGTGTTTACAAGCTTGATCTCGACAGCTTGCAGGCCGAAAGTGGCTCCACGGTCACGGGTCTGAAGGAAGTG
TTTTCCGATCCGCTTCTGACCGGCGAATTGCCGGGCGATCAGGAACTGGTGGAAATCGGCGAGGCTGCACCCAATGCTGC
CGTCGGCATCATGAAGCTTTACCGCGCCTATCGCGAGCAGCAGCAGCGCCTGTCCGATCTGTCAAAACTGCTTTCGCATG
AAGGCAGCGATACGCAGCTTGCCGCCACCCGCCTGCCGCTGGATGAGGTGCGCGATGTCATGGCGCGGCGCGCCAACCAT
TATCCGCGCATCGAGGAAGAGGCGGAAAGTTTTTATGCCTTGCTCAAACCGGATGGCGATTTGTCGAGCGCGTTGAAGGA
CTGGCTGCGGCGCGAACATGGCATCACGGTGCGCACTCTGCCGGTCGCCACCATGCCGAACTGGCGCAGGCGCTATGACC
GGCATTCGCAGCGGCTTTTCATTTCCGAGCGTCTGTCACCCTTCGATCAATTGCAGGAAATCGCCATGGAAGCGGCGCTA
ATCCGCATGCAGGTGGTGATCGGTGTGGAAACGGAAGGGCTCAAACTGTCGTCGGGCGAGGCGAAGCGCATCGCGCGGTT
CGAGCTGGCGCGCTATGCCGCGCAGGCGCTGATGATGCCTTACCGCCAGTTTCGCGATGCTGCCGTGCGGGCGCGTTATG
ATATCGATGTGCTGCGCTCACGCTTCGGCGTTTCCTTCCAGCAGGCGGCAAACCGGCTCACCACCTTGCAGCGGCAAGGA
TCAAGCGGGCTGCCGTTTTTCGTGATGGAAATCGACCATGCGGGCAACCGGCTGCGCATGGCTGGCGCGGAAGGCTTTCC
GGCCCGCTTTGGCGGGCAGTGCCCGAAGCTTCCTGTCTATGCGGCTTTCGCGCAGGCAGGGCAGGTACTGGTCGAGCCGG
CGGAACTGCCTGACGGTTCGGCTTTCCTGACCATTGCCCGCACGCTGGAAGGGCCGCAAGGCGCGTTCAGCGAGCGTCCG
CGCCGCACGGCGCTGCTGCTTGGCTGTGCACTGGAAGCGGGCGAGGAAACGGTTTACGGCACTTCGCTTTCCAGGGTGGG
CAATACGGAAATAGGCCCGGCCTGTCGCCTGTGCGAGAGGCAGGGCTGCATCACCCGCGCCGAGCCGCCGCTGACACGCC
CGCTTGGTCTGGATGAGATGGTAGCGGGGTTGTCCGCCTTCGACTTCCAGTAG

Upstream 100 bases:

>100_bases
CTGCGACAGGATGTAAATTTGTAAATCTTGTCAAAGGGGTGTTTTGGCGATATCTTGTCACGGGTTGTAAATATGAAAAA
TCACGGGGGAGGGTGAGGCT

Downstream 100 bases:

>100_bases
GGGCGCGATATTTCAGCTTAGCACAACCAAAATCTCATCGCCCCTTGGTGGATCCCTCGGGCGGAGAGGCGGATATGCTC
ATGGGGTTCTGATGCAATTT

Product: Cro/CI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSLQAESGSTVTGLKEV
FSDPLLTGELPGDQELVEIGEAAPNAAVGIMKLYRAYREQQQRLSDLSKLLSHEGSDTQLAATRLPLDEVRDVMARRANH
YPRIEEEAESFYALLKPDGDLSSALKDWLRREHGITVRTLPVATMPNWRRRYDRHSQRLFISERLSPFDQLQEIAMEAAL
IRMQVVIGVETEGLKLSSGEAKRIARFELARYAAQALMMPYRQFRDAAVRARYDIDVLRSRFGVSFQQAANRLTTLQRQG
SSGLPFFVMEIDHAGNRLRMAGAEGFPARFGGQCPKLPVYAAFAQAGQVLVEPAELPDGSAFLTIARTLEGPQGAFSERP
RRTALLLGCALEAGEETVYGTSLSRVGNTEIGPACRLCERQGCITRAEPPLTRPLGLDEMVAGLSAFDFQ

Sequences:

>Translated_470_residues
MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSLQAESGSTVTGLKEV
FSDPLLTGELPGDQELVEIGEAAPNAAVGIMKLYRAYREQQQRLSDLSKLLSHEGSDTQLAATRLPLDEVRDVMARRANH
YPRIEEEAESFYALLKPDGDLSSALKDWLRREHGITVRTLPVATMPNWRRRYDRHSQRLFISERLSPFDQLQEIAMEAAL
IRMQVVIGVETEGLKLSSGEAKRIARFELARYAAQALMMPYRQFRDAAVRARYDIDVLRSRFGVSFQQAANRLTTLQRQG
SSGLPFFVMEIDHAGNRLRMAGAEGFPARFGGQCPKLPVYAAFAQAGQVLVEPAELPDGSAFLTIARTLEGPQGAFSERP
RRTALLLGCALEAGEETVYGTSLSRVGNTEIGPACRLCERQGCITRAEPPLTRPLGLDEMVAGLSAFDFQ
>Mature_469_residues
SERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSLQAESGSTVTGLKEVF
SDPLLTGELPGDQELVEIGEAAPNAAVGIMKLYRAYREQQQRLSDLSKLLSHEGSDTQLAATRLPLDEVRDVMARRANHY
PRIEEEAESFYALLKPDGDLSSALKDWLRREHGITVRTLPVATMPNWRRRYDRHSQRLFISERLSPFDQLQEIAMEAALI
RMQVVIGVETEGLKLSSGEAKRIARFELARYAAQALMMPYRQFRDAAVRARYDIDVLRSRFGVSFQQAANRLTTLQRQGS
SGLPFFVMEIDHAGNRLRMAGAEGFPARFGGQCPKLPVYAAFAQAGQVLVEPAELPDGSAFLTIARTLEGPQGAFSERPR
RTALLLGCALEAGEETVYGTSLSRVGNTEIGPACRLCERQGCITRAEPPLTRPLGLDEMVAGLSAFDFQ

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 52253; Mature: 52121

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
LDLDSLQAESGSTVTGLKEVFSDPLLTGELPGDQELVEIGEAAPNAAVGIMKLYRAYREQ
HCHHHHCCCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
QQRLSDLSKLLSHEGSDTQLAATRLPLDEVRDVMARRANHYPRIEEEAESFYALLKPDGD
HHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHEEHCCCCCC
LSSALKDWLRREHGITVRTLPVATMPNWRRRYDRHSQRLFISERLSPFDQLQEIAMEAAL
HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IRMQVVIGVETEGLKLSSGEAKRIARFELARYAAQALMMPYRQFRDAAVRARYDIDVLRS
HHHHEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFGVSFQQAANRLTTLQRQGSSGLPFFVMEIDHAGNRLRMAGAEGFPARFGGQCPKLPVY
HHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHCCCCCCCHHH
AAFAQAGQVLVEPAELPDGSAFLTIARTLEGPQGAFSERPRRTALLLGCALEAGEETVYG
HHHHHCCCEEEECCCCCCCCEEEEHHHHCCCCCCCHHCCCCHHHHHHHHHHHCCCCEEEC
TSLSRVGNTEIGPACRLCERQGCITRAEPPLTRPLGLDEMVAGLSAFDFQ
CHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCHHHCCC
>Mature Secondary Structure 
SERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
LDLDSLQAESGSTVTGLKEVFSDPLLTGELPGDQELVEIGEAAPNAAVGIMKLYRAYREQ
HCHHHHCCCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
QQRLSDLSKLLSHEGSDTQLAATRLPLDEVRDVMARRANHYPRIEEEAESFYALLKPDGD
HHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHEEHCCCCCC
LSSALKDWLRREHGITVRTLPVATMPNWRRRYDRHSQRLFISERLSPFDQLQEIAMEAAL
HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IRMQVVIGVETEGLKLSSGEAKRIARFELARYAAQALMMPYRQFRDAAVRARYDIDVLRS
HHHHEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFGVSFQQAANRLTTLQRQGSSGLPFFVMEIDHAGNRLRMAGAEGFPARFGGQCPKLPVY
HHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHCCCCCCCHHH
AAFAQAGQVLVEPAELPDGSAFLTIARTLEGPQGAFSERPRRTALLLGCALEAGEETVYG
HHHHHCCCEEEECCCCCCCCEEEEHHHHCCCCCCCHHCCCCHHHHHHHHHHHCCCCEEEC
TSLSRVGNTEIGPACRLCERQGCITRAEPPLTRPLGLDEMVAGLSAFDFQ
CHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]