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The map label for this gene is yfiO [C]

Identifier: 23502293

GI number: 23502293

Start: 1377769

End: 1378632

Strand: Reverse

Name: yfiO [C]

Synonym: BR1422

Alternate gene names: 23502293

Gene position: 1378632-1377769 (Counterclockwise)

Preceding gene: 23502295

Following gene: 23502292

Centisome position: 65.41

GC content: 56.6

Gene sequence:

>864_bases
ATGACGAGTTTCAAATTCACGGGTGTGACGAAAACCGCGCTGTTGAGTGGCACCATAGCCGTTCTTATCCCGCTCGCCGG
TTGCGCCAGCAAGAACGACGATATCGATCTCACCAAATATGTCGAGACGATCGATCCTGCCGACAAACTTTACAATGAAG
GCCTGGCCAATCTCGATGCAGGCCGTCTTGATGAGGCCGCGAAGAAGTTCGCCGCTATCGATCGCCAGCATCCCTATACG
GAATGGGCGCGCAAGGCGCTTGTGATGGCCGCCTTCACCAATTACCGCAAAGGCAATTACGAAGAAGCGATCTCGATGGC
GAAGCGTTATAACACGCTTTACCCGACCTCGCCGGAATCGGCCTATGCTTATTACATCATCGGCCTTTCCTACTTCCGCC
AGATCCCGGATGTGACGCGCGATCAGGCGGCAAGCCGCCGCGCCATTGCCGCGATGCAGGAAGTGATCGATCGTTTCCCG
AATTCCGAATATACGGATGACGCCAAGACGAAAATCCGTGTTGCCCGCGACCAGCTCGCCGGCAAGGAAATGCAGATTGG
CCGCTATTACCTTGAGCGCAAGGAATATCTGGCGGCGATCAAGCGTTTCCGCGGCGTGGTTGAGGAATATTCAAACACCC
GTCAGGTGGAAGAGGCGCTCGCCCGTCTGGTTGAAGCCTATTATGCGCTTGGCCTGACATCGGAAGCCCAGATGGCCGCT
TCGGTTCTCGGCAAGAATTTCCCGGACAGCCAGTGGTACAAGGACAGCTACAAGCTCTTGCAGAGCGGCGGTCTTCAGCC
GCGCGAAAATGGCAATTCGTGGCTGGCCAAGGCTGGGGCGCTCATCACCGGCGGCAGCTCATAA

Upstream 100 bases:

>100_bases
TGCTGACGCTGAATCAATTCGATGGATGGAGCATTTGCGGAGTGCTAAAAGCACATGCGGCTTCAAACGGGAAAGACGCT
ACCAGAGGGCCGGAGACCGC

Downstream 100 bases:

>100_bases
GCTGATCCCGACATGCTGTCGCACCTGTCGATCCGCGATATTGTTCTGATTGAAAGGCTCGACATCGTGTTCAGGAGCGG
CTTGTCCGTGCTTACGGGTG

Product: competence protein ComL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MTSFKFTGVTKTALLSGTIAVLIPLAGCASKNDDIDLTKYVETIDPADKLYNEGLANLDAGRLDEAAKKFAAIDRQHPYT
EWARKALVMAAFTNYRKGNYEEAISMAKRYNTLYPTSPESAYAYYIIGLSYFRQIPDVTRDQAASRRAIAAMQEVIDRFP
NSEYTDDAKTKIRVARDQLAGKEMQIGRYYLERKEYLAAIKRFRGVVEEYSNTRQVEEALARLVEAYYALGLTSEAQMAA
SVLGKNFPDSQWYKDSYKLLQSGGLQPRENGNSWLAKAGALITGGSS

Sequences:

>Translated_287_residues
MTSFKFTGVTKTALLSGTIAVLIPLAGCASKNDDIDLTKYVETIDPADKLYNEGLANLDAGRLDEAAKKFAAIDRQHPYT
EWARKALVMAAFTNYRKGNYEEAISMAKRYNTLYPTSPESAYAYYIIGLSYFRQIPDVTRDQAASRRAIAAMQEVIDRFP
NSEYTDDAKTKIRVARDQLAGKEMQIGRYYLERKEYLAAIKRFRGVVEEYSNTRQVEEALARLVEAYYALGLTSEAQMAA
SVLGKNFPDSQWYKDSYKLLQSGGLQPRENGNSWLAKAGALITGGSS
>Mature_286_residues
TSFKFTGVTKTALLSGTIAVLIPLAGCASKNDDIDLTKYVETIDPADKLYNEGLANLDAGRLDEAAKKFAAIDRQHPYTE
WARKALVMAAFTNYRKGNYEEAISMAKRYNTLYPTSPESAYAYYIIGLSYFRQIPDVTRDQAASRRAIAAMQEVIDRFPN
SEYTDDAKTKIRVARDQLAGKEMQIGRYYLERKEYLAAIKRFRGVVEEYSNTRQVEEALARLVEAYYALGLTSEAQMAAS
VLGKNFPDSQWYKDSYKLLQSGGLQPRENGNSWLAKAGALITGGSS

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=248, Percent_Identity=22.9838709677419, Blast_Score=94, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32083; Mature: 31951

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSFKFTGVTKTALLSGTIAVLIPLAGCASKNDDIDLTKYVETIDPADKLYNEGLANLDA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCC
GRLDEAAKKFAAIDRQHPYTEWARKALVMAAFTNYRKGNYEEAISMAKRYNTLYPTSPES
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
AYAYYIIGLSYFRQIPDVTRDQAASRRAIAAMQEVIDRFPNSEYTDDAKTKIRVARDQLA
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
GKEMQIGRYYLERKEYLAAIKRFRGVVEEYSNTRQVEEALARLVEAYYALGLTSEAQMAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SVLGKNFPDSQWYKDSYKLLQSGGLQPRENGNSWLAKAGALITGGSS
HHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEECCCC
>Mature Secondary Structure 
TSFKFTGVTKTALLSGTIAVLIPLAGCASKNDDIDLTKYVETIDPADKLYNEGLANLDA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCC
GRLDEAAKKFAAIDRQHPYTEWARKALVMAAFTNYRKGNYEEAISMAKRYNTLYPTSPES
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
AYAYYIIGLSYFRQIPDVTRDQAASRRAIAAMQEVIDRFPNSEYTDDAKTKIRVARDQLA
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
GKEMQIGRYYLERKEYLAAIKRFRGVVEEYSNTRQVEEALARLVEAYYALGLTSEAQMAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SVLGKNFPDSQWYKDSYKLLQSGGLQPRENGNSWLAKAGALITGGSS
HHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]