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The map label for this gene is recD [C]

Identifier: 23502258

GI number: 23502258

Start: 1341126

End: 1342247

Strand: Reverse

Name: recD [C]

Synonym: BR1387

Alternate gene names: 23502258

Gene position: 1342247-1341126 (Counterclockwise)

Preceding gene: 23502259

Following gene: 23502256

Centisome position: 63.68

GC content: 58.56

Gene sequence:

>1122_bases
ATGCAGTTTTCACCCGAACAGGATCAGGCGCTGAAAGCGGTCGGCCAATGGCTCAAGGCCGGGCGCAGCCCCATCTTCAG
GCTCTTTGGCTATGCCGGCACGGGCAAGACGACGCTTGCGCGCTATTTTGCCGAGCATGTGGATGGTGAGGTGCAGTTTG
CAGCCTTCACCGGCAAGGCGGCGCAGGTTCTCCGTTCCAAGGGCGCCAGCAATGCCCGCACGCTTCATTCCCTGATTTAT
CGCCCGCGCGGTGAAGAGGCGATTGAGGACGAGACGACAGGCAAGACATCCATTGCGCCAACCTTTTCGCTCAACCGGCA
AAGCCCGGTTGCGAAAGCCGCCATGATCGTGGTCGATGAATGTTCGATGGTGGATGAGGCGCTGGGACGGGACCTGATGA
GTTTCGGCACGCCAATTCTCGTTCTGGGGGATCCGGGCCAATTGCCGCCGATTTCCGGCGGCGGGTTCTTCACCGAGCAT
GAGCCGGATTATCTCCTGACCGAAATTCATCGTCAGGCACGCGACAATCCAATCATCCGCATGGCGCTGGATGTGCGCGA
AGGCCGGGAACTGTCCTATGGCGATTATGGCGCGGCAAAGGTGATCGGCAAAAGCGAGGTCAATCAGGATATCGTTCTGG
CCGCAGATCAGGTGCTTGTGGGCACCAACCGCACCAGGCGGCGCTATAACCAGCGCCTGCGGGAGCTGAAAGGTTTTACG
GCCGATTATCCGCAGGCGGGTGACAAGCTCGTCTGCCTGCGCAACGATCCGACCAAGGGGCTGCTCAACGGCTCGCTCTG
GAAGGTGATGACTTCTTCCAAGGAAACCGTGAAGCCCGGCATCAATCTTCTGGTCTCGCCGGAGGATGAGGATCGCGGCG
TTGCCAAGATCAAGCTTCTCAAGGCGCAGTTCGAGGACCCGGACACCGAAATTCCGTGGCAGACCAAGAAACGTTTTGAT
GATTTTGATTATGGCTATGCGCTGACCGTCCATAAGGCGCAGGGTTCGCAATGGGATCAGGTCGTTCTGTTCGACGAAAG
CTTCGCCTTTCGCGATACGCGTGAACGCTGGCTCTATACGGCCATTACGCGCGCGGCAGAACGCCTCATCATCGTGAAGT
AA

Upstream 100 bases:

>100_bases
ATTATCAGCGGAGGCAATGTCGCTCTCGGCAGATTGGCCGTTTCGATAAGCAAAATTGTTTGATCTTGTTTTCAGACGGC
GAATCCTGTCTGAAAGGATC

Downstream 100 bases:

>100_bases
TCATTCTTCGACCGGCTTTGCATCAAGCCATTCCCAGGCATCCTGTTCTTCGTCGGGATCGAAGGCGCGAACTTCTATGG
AGAGGAATGGCTGCACGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: Deoxyribonuclease; ATPase; Helicase RecD/TraA Family; Exonuclease V Subunit Alpha; Exodeoxyribonuclease V Alpha Chain; AAA Family ATPase; Exodeoxyribonuclease V Subunit Alpha; Exodeoxyribosylnuclease; Exodeoxyribonuclease V Subunit RecD; Helicase RecD/TraA; Bacteriophage-Type DNA Helicase; ATP-Dependent ExoDNAse Subunit Alpha; Exodeoxyribonuclease; AAA ATPase; Helicase; Helicase ATP-Dependent; ATP-Dependent ExoDNAse; DNA Helicase

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAEHVDGEVQFAAFTGKAAQVLRSKGASNARTLHSLIY
RPRGEEAIEDETTGKTSIAPTFSLNRQSPVAKAAMIVVDECSMVDEALGRDLMSFGTPILVLGDPGQLPPISGGGFFTEH
EPDYLLTEIHRQARDNPIIRMALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRTRRRYNQRLRELKGFT
ADYPQAGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLVSPEDEDRGVAKIKLLKAQFEDPDTEIPWQTKKRFD
DFDYGYALTVHKAQGSQWDQVVLFDESFAFRDTRERWLYTAITRAAERLIIVK

Sequences:

>Translated_373_residues
MQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAEHVDGEVQFAAFTGKAAQVLRSKGASNARTLHSLIY
RPRGEEAIEDETTGKTSIAPTFSLNRQSPVAKAAMIVVDECSMVDEALGRDLMSFGTPILVLGDPGQLPPISGGGFFTEH
EPDYLLTEIHRQARDNPIIRMALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRTRRRYNQRLRELKGFT
ADYPQAGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLVSPEDEDRGVAKIKLLKAQFEDPDTEIPWQTKKRFD
DFDYGYALTVHKAQGSQWDQVVLFDESFAFRDTRERWLYTAITRAAERLIIVK
>Mature_373_residues
MQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAEHVDGEVQFAAFTGKAAQVLRSKGASNARTLHSLIY
RPRGEEAIEDETTGKTSIAPTFSLNRQSPVAKAAMIVVDECSMVDEALGRDLMSFGTPILVLGDPGQLPPISGGGFFTEH
EPDYLLTEIHRQARDNPIIRMALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRTRRRYNQRLRELKGFT
ADYPQAGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLVSPEDEDRGVAKIKLLKAQFEDPDTEIPWQTKKRFD
DFDYGYALTVHKAQGSQWDQVVLFDESFAFRDTRERWLYTAITRAAERLIIVK

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 41667; Mature: 41667

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAEHVDGEVQFAAFTGKA
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCHH
AQVLRSKGASNARTLHSLIYRPRGEEAIEDETTGKTSIAPTFSLNRQSPVAKAAMIVVDE
HHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEECCCCCCHHHHHEEEEHH
CSMVDEALGRDLMSFGTPILVLGDPGQLPPISGGGFFTEHEPDYLLTEIHRQARDNPIIR
HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
MALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRTRRRYNQRLRELKGFT
EEEECCCCCCCCCCCCCHHEEECHHHCCCCEEEEECEEEECCCHHHHHHHHHHHHHCCCC
ADYPQAGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLVSPEDEDRGVAKIKLL
CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCEEEECCCCCCCCCEEEEEE
KAQFEDPDTEIPWQTKKRFDDFDYGYALTVHKAQGSQWDQVVLFDESFAFRDTRERWLYT
EHHCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHH
AITRAAERLIIVK
HHHHHHHEEEEEC
>Mature Secondary Structure
MQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAEHVDGEVQFAAFTGKA
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCHH
AQVLRSKGASNARTLHSLIYRPRGEEAIEDETTGKTSIAPTFSLNRQSPVAKAAMIVVDE
HHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEECCCCCCHHHHHEEEEHH
CSMVDEALGRDLMSFGTPILVLGDPGQLPPISGGGFFTEHEPDYLLTEIHRQARDNPIIR
HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
MALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRTRRRYNQRLRELKGFT
EEEECCCCCCCCCCCCCHHEEECHHHCCCCEEEEECEEEECCCHHHHHHHHHHHHHCCCC
ADYPQAGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLVSPEDEDRGVAKIKLL
CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCEEEECCCCCCCCCEEEEEE
KAQFEDPDTEIPWQTKKRFDDFDYGYALTVHKAQGSQWDQVVLFDESFAFRDTRERWLYT
EHHCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHH
AITRAAERLIIVK
HHHHHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA