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The map label for this gene is yabI [H]

Identifier: 23502205

GI number: 23502205

Start: 1296229

End: 1296891

Strand: Reverse

Name: yabI [H]

Synonym: BR1333

Alternate gene names: 23502205

Gene position: 1296891-1296229 (Counterclockwise)

Preceding gene: 23502209

Following gene: 23502204

Centisome position: 61.53

GC content: 59.58

Gene sequence:

>663_bases
ATGGAAAGCATAATTGGGGATCTAGGGCAGTTTATTTCCGATCACCGGGCGTGGGCCGGGCCAATTGTGGGCGCCATCGC
CTTTGGTGAATCTCTTGCCATCATCGGAATGTTCATTCCCGCGACCCCGATCATGATCGCCATTGGCGGCCTTGTCGGCG
CTGGAATTGTTGAGCCGCTCCCCGTGATCATCGGCGCCGTCATCGGTGCGGTGGCCGGTGACATTATTTCCTATCTTCTT
CGCTGGTGGCTGGGCCGCAACATCATTCATAAATGGCCGCTCAACAAGTATCGCAGCGCCGTGGCGCGTGCGCGCCTCCT
CTTTCGCCGCTATGGTTTTACCGCGGTTTTTTTGGGCCGGTTCTTCGGGCCGGTGCGCTGTACCGTGCCGATGGTGGCTG
GCATGATGTCCATGGACCAGACCCGATTCCAGACGGCAAACGTGCTTTCGGCACTCGTATGGGCCCCGCTCATGTTCCTT
CCGGGCTGGCTGGTAGGGCGCGGGGCAGGGATATTCGCCAAAATGGATGGCGATCATATGCGCTGGTTTATCATCGCTAT
CGCCATTGCCACTGTCATCGTAACGGTTATTGGCGTGCGCTTTTTCAGGGCGCGCCCGCGCCACGAGCGCAAGCGCGGGG
TGCAGGTATCGCCGGGGGAGTAA

Upstream 100 bases:

>100_bases
TATTTGAGCAGGGCGCTTCACGCACCGGATAGGCTTTGCGGAAAATACAGAGGCGGTTTTGATCGTTTCAGAAATCCGGT
TTGCGGTATTTGAGGATGGA

Downstream 100 bases:

>100_bases
TCAGCCACTTGTCTTGCGGGTTTGCGTCTGCATAATGAGGCAAACCATAGTTTCCCATGGCAATGGGCGATTCATTGGCA
GTATATGCCCCGGTGAATGC

Product: dedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MESIIGDLGQFISDHRAWAGPIVGAIAFGESLAIIGMFIPATPIMIAIGGLVGAGIVEPLPVIIGAVIGAVAGDIISYLL
RWWLGRNIIHKWPLNKYRSAVARARLLFRRYGFTAVFLGRFFGPVRCTVPMVAGMMSMDQTRFQTANVLSALVWAPLMFL
PGWLVGRGAGIFAKMDGDHMRWFIIAIAIATVIVTVIGVRFFRARPRHERKRGVQVSPGE

Sequences:

>Translated_220_residues
MESIIGDLGQFISDHRAWAGPIVGAIAFGESLAIIGMFIPATPIMIAIGGLVGAGIVEPLPVIIGAVIGAVAGDIISYLL
RWWLGRNIIHKWPLNKYRSAVARARLLFRRYGFTAVFLGRFFGPVRCTVPMVAGMMSMDQTRFQTANVLSALVWAPLMFL
PGWLVGRGAGIFAKMDGDHMRWFIIAIAIATVIVTVIGVRFFRARPRHERKRGVQVSPGE
>Mature_220_residues
MESIIGDLGQFISDHRAWAGPIVGAIAFGESLAIIGMFIPATPIMIAIGGLVGAGIVEPLPVIIGAVIGAVAGDIISYLL
RWWLGRNIIHKWPLNKYRSAVARARLLFRRYGFTAVFLGRFFGPVRCTVPMVAGMMSMDQTRFQTANVLSALVWAPLMFL
PGWLVGRGAGIFAKMDGDHMRWFIIAIAIATVIVTVIGVRFFRARPRHERKRGVQVSPGE

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1786252, Length=212, Percent_Identity=31.6037735849057, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1789481, Length=156, Percent_Identity=27.5641025641026, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789384, Length=163, Percent_Identity=30.6748466257669, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788656, Length=196, Percent_Identity=23.9795918367347, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24072; Mature: 24072

Theoretical pI: Translated: 11.84; Mature: 11.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESIIGDLGQFISDHRAWAGPIVGAIAFGESLAIIGMFIPATPIMIAIGGLVGAGIVEPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVIIGAVIGAVAGDIISYLLRWWLGRNIIHKWPLNKYRSAVARARLLFRRYGFTAVFLGR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
FFGPVRCTVPMVAGMMSMDQTRFQTANVLSALVWAPLMFLPGWLVGRGAGIFAKMDGDHM
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEEEEECCCHH
RWFIIAIAIATVIVTVIGVRFFRARPRHERKRGVQVSPGE
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCC
>Mature Secondary Structure
MESIIGDLGQFISDHRAWAGPIVGAIAFGESLAIIGMFIPATPIMIAIGGLVGAGIVEPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVIIGAVIGAVAGDIISYLLRWWLGRNIIHKWPLNKYRSAVARARLLFRRYGFTAVFLGR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
FFGPVRCTVPMVAGMMSMDQTRFQTANVLSALVWAPLMFLPGWLVGRGAGIFAKMDGDHM
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEEEEECCCHH
RWFIIAIAIATVIVTVIGVRFFRARPRHERKRGVQVSPGE
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1630901; 9278503 [H]