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The map label for this gene is rarA [H]

Identifier: 23502083

GI number: 23502083

Start: 1183037

End: 1184350

Strand: Reverse

Name: rarA [H]

Synonym: BR1206

Alternate gene names: 23502083

Gene position: 1184350-1183037 (Counterclockwise)

Preceding gene: 23502084

Following gene: 23502082

Centisome position: 56.19

GC content: 60.05

Gene sequence:

>1314_bases
ATGAGCGATCTATTTTCAACAGCGGCAGACCCGAATGCGGACCGCAACAGGCCGCTTGCGGACCGCCTGCGCCCCAAACA
TCTTTCGGAAGTGACCGGCCAGGAACACCTGACGGGGCCGGAAGGCGTGTTGACGCGTATGATTGCCTCCGGCTCGCTCG
GCTCCATGGTCTTCTGGGGGCCGCCCGGCACCGGCAAGACAACCGTTGCGCGCCTGCTTGCCGGTGAAACCGATCTCGCC
TTCGAGCAGATTTCCGCGATCTTTTCCGGTGTCGCCGATCTGAAGAGGGTGTTTGAAGCGGCGCGCGCGCGCCGTATGTC
CGGGCGGCAGACACTGCTTTTTGTGGATGAAATTCATCGCTTCAACCGGGCGCAGCAGGATTCCTTCCTGCCGGTTATGG
AAGATGGCACAGTTATCCTGATTGGCGCCACGACCGAAAACCCTTCTTTTGAACTCAATGCCGCTCTCCTGTCACGCGCG
CGGGTTCTGACTTTTCATCCGCATGACAGCGAAAGCATCGCCACGCTTCTCAAACGCGCCGAGGAGCAGGAGGGGCAGGC
GCTGCCGCTGGATGATGAGGCGCGGGCAAGCCTTATCCGCATGGCGGATGGCGATGGCCGTGCGGCGCTGACGCTTGCCG
AGGAAGTCTGGCGCGCTGTACGCCCCGGCGAAGTGTTCGATGCTGCCAAATTGCAGGATGTGGTTCAGCGCCGTGCACCG
GTCTATGACAAAAGCCAGGATGGCCATTACAACCTCATTTCCGCCTTGCACAAATCGGTACGCGGTTCCGACCCGGATGC
GGCGCTTTATTATCTTTCACGCATGTTCGATGCCGGAGAAGACCCGCTTTATATCGGACGCCGCCTCGTACGGATGGCGG
TGGAGGATATCGGCCTTGCCGATCCGCAGGCGCTTGCCATCTGCAACGCGGCCAAGGATGCCTATGATTATCTGGGCTCG
CCGGAGGGGGAGCTTGCACTGGCCCAGGCCTGCGTTTATCTCGCTACGGCACCCAAATCCAATGCGGTCTATGTCGCCTT
CAAGAATTCCATGCGCGCGGCAAAAGAAAACGGGTCGCTTTTGCCGCCGAAACACATTCTCAACGCGCCAACCAAGCTCA
TGAAGAATGAGGGCTATAGCGAAGGCTATGCCTATGACCACGGCCAACCCGATGCATTTTCAGGCCAGGATTATTTTCCC
GAAGCCATGGGCAGGCAGGTTTTCTACAATCCGCCCGAGCGCGGGTTCGAGCGGGAAATCCGCAAGCGGCTGGAATATTG
GGCACGGCTGCGGCAGGAGCGGCAGCGGCGCTGA

Upstream 100 bases:

>100_bases
CCGGCAGGATTATGCTCCGGCACCGGCGGACAGACGTTGCATGCCGCTTCAGGGGGGATTATGCCTGAAGCGGCATTTTG
TTTATGATCGAGCGATTGGA

Downstream 100 bases:

>100_bases
CTGCCATTTTTCTTTCTTCCTTTCACGCATGTTTGACATCTGGTGAATTGGCAAGGCCTGTCGTTAGAAAGGTCTTCTTA
ATTTTTACGTTTTATCAATA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMIASGSLGSMVFWGPPGTGKTTVARLLAGETDLA
FEQISAIFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSRA
RVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWRAVRPGEVFDAAKLQDVVQRRAP
VYDKSQDGHYNLISALHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLADPQALAICNAAKDAYDYLGS
PEGELALAQACVYLATAPKSNAVYVAFKNSMRAAKENGSLLPPKHILNAPTKLMKNEGYSEGYAYDHGQPDAFSGQDYFP
EAMGRQVFYNPPERGFEREIRKRLEYWARLRQERQRR

Sequences:

>Translated_437_residues
MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMIASGSLGSMVFWGPPGTGKTTVARLLAGETDLA
FEQISAIFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSRA
RVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWRAVRPGEVFDAAKLQDVVQRRAP
VYDKSQDGHYNLISALHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLADPQALAICNAAKDAYDYLGS
PEGELALAQACVYLATAPKSNAVYVAFKNSMRAAKENGSLLPPKHILNAPTKLMKNEGYSEGYAYDHGQPDAFSGQDYFP
EAMGRQVFYNPPERGFEREIRKRLEYWARLRQERQRR
>Mature_436_residues
SDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMIASGSLGSMVFWGPPGTGKTTVARLLAGETDLAF
EQISAIFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSRAR
VLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWRAVRPGEVFDAAKLQDVVQRRAPV
YDKSQDGHYNLISALHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLADPQALAICNAAKDAYDYLGSP
EGELALAQACVYLATAPKSNAVYVAFKNSMRAAKENGSLLPPKHILNAPTKLMKNEGYSEGYAYDHGQPDAFSGQDYFPE
AMGRQVFYNPPERGFEREIRKRLEYWARLRQERQRR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=435, Percent_Identity=40.4597701149425, Blast_Score=309, Evalue=3e-84,
Organism=Homo sapiens, GI18426904, Length=435, Percent_Identity=36.3218390804598, Blast_Score=256, Evalue=3e-68,
Organism=Escherichia coli, GI1787119, Length=429, Percent_Identity=47.0862470862471, Blast_Score=375, Evalue=1e-105,
Organism=Saccharomyces cerevisiae, GI6324111, Length=425, Percent_Identity=40.2352941176471, Blast_Score=301, Evalue=1e-82,
Organism=Saccharomyces cerevisiae, GI6324039, Length=218, Percent_Identity=26.605504587156, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48445; Mature: 48314

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMIASGSLGSMVFWG
CCCHHHCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEC
PPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAARARRMSGRQTLLFVDEIHR
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
FNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSRARVLTFHPHDSESIATLLKRA
HHHHCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHCCCEEEEECCCCHHHHHHHHHHH
EEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWRAVRPGEVFDAAKLQDVVQRRAP
HHHCCCCCCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
VYDKSQDGHYNLISALHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLA
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
DPQALAICNAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYVAFKNSMRAAKENGSL
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCEEEEEECCCHHHHHHCCCC
LPPKHILNAPTKLMKNEGYSEGYAYDHGQPDAFSGQDYFPEAMGRQVFYNPPERGFEREI
CCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEECCCCCHHHHHH
RKRLEYWARLRQERQRR
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMIASGSLGSMVFWG
CCHHHCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEC
PPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAARARRMSGRQTLLFVDEIHR
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
FNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSRARVLTFHPHDSESIATLLKRA
HHHHCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHCCCEEEEECCCCHHHHHHHHHHH
EEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWRAVRPGEVFDAAKLQDVVQRRAP
HHHCCCCCCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
VYDKSQDGHYNLISALHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLA
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
DPQALAICNAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYVAFKNSMRAAKENGSL
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCEEEEEECCCHHHHHHCCCC
LPPKHILNAPTKLMKNEGYSEGYAYDHGQPDAFSGQDYFPEAMGRQVFYNPPERGFEREI
CCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEECCCCCHHHHHH
RKRLEYWARLRQERQRR
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]