Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 23501027

GI number: 23501027

Start: 124256

End: 125086

Strand: Reverse

Name: yddE [C]

Synonym: BR0113

Alternate gene names: 23501027

Gene position: 125086-124256 (Counterclockwise)

Preceding gene: 23501028

Following gene: 23501019

Centisome position: 5.93

GC content: 60.53

Gene sequence:

>831_bases
TTGGACGTGTTGCGCATTGCGGCCTTTTCACAGGGCGACAAGGGTGGAAACCCGGCTGGCGTCATGATCGCGGATCGATT
GCCATCTCCGCAGGACATGCAGAAAATCGCCAAGGATGTCGGGTTTTCAGAAACCGCTTTTGCAGCGCCAGATGGCGAAA
GCTGGCGCGTGCGCTATTTCGCACCGGAAATGGAAGTGCCATTCTGCGGCCATGCAACCATTGCCCTTGGAGCAGCACTT
GCCATGCGCGAGGGTGACGGGCGTTTCGCCCTCCGGCTCAATCATGATGAAATCAGCGTGGAAGGGCGCAAGGAGGGCGA
GCTTTTCGCCGCCAGCCTGCAATCGCCACGCACCCGCAACCGCGCCGCGACCGAAGCGGAAATCGGCCAGGCCCTTGCCC
TTTTCAACTATGAGCCGGATGATCTTGCCCACGGCATCTCGCCTGCGTTGATCCATGCCGGTGCGGACCATATTGTGCTG
CCGCTGCGCTCGCGTGAAAAGCTTGCCTCCATGCATTATGACCTCTCACGTGGGCGCGTGACCATGAGCCGGCAGGGCTG
GACGACGATACTGCTCATCTATTCCGAAACGCCGCGGCGTTTTCATGCCCGCAATCCATTCGCCTCAGGCGGGGTCTATG
AAGACCCGGCAACGGGAGCCGCGACGGCGGCCTTTGCCGCTTATCTTCGCGATATAGGCTGGCCGCATGGCGGGTCGATC
GAAGTGTTTCAGGGCGAAGATATGGGCAGTCCCTCGCATCTGCACGCCGAAATCGGCACGGAACGCGGTGGTTCTATCCG
TGTTTCCGGCACTGCCCGGCTGATGGAATAA

Upstream 100 bases:

>100_bases
GGCCCGAAAATGCTCTGGCTGACAGACGGCTTGACCAGCCACATTTCACGTCTTTTATTGAGGTGGGCGAGGCACGAATC
GAACGGGTGAGGAGACAATT

Downstream 100 bases:

>100_bases
AGCCTGCGATGCAGCTCATAACGCCGAATATCCGCTGATATTCAGACGCGGACGAGCTGCTCCACGCGTTCCTCATTGCC
GAAGAACCTGAGATAGCGCG

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MDVLRIAAFSQGDKGGNPAGVMIADRLPSPQDMQKIAKDVGFSETAFAAPDGESWRVRYFAPEMEVPFCGHATIALGAAL
AMREGDGRFALRLNHDEISVEGRKEGELFAASLQSPRTRNRAATEAEIGQALALFNYEPDDLAHGISPALIHAGADHIVL
PLRSREKLASMHYDLSRGRVTMSRQGWTTILLIYSETPRRFHARNPFASGGVYEDPATGAATAAFAAYLRDIGWPHGGSI
EVFQGEDMGSPSHLHAEIGTERGGSIRVSGTARLME

Sequences:

>Translated_276_residues
MDVLRIAAFSQGDKGGNPAGVMIADRLPSPQDMQKIAKDVGFSETAFAAPDGESWRVRYFAPEMEVPFCGHATIALGAAL
AMREGDGRFALRLNHDEISVEGRKEGELFAASLQSPRTRNRAATEAEIGQALALFNYEPDDLAHGISPALIHAGADHIVL
PLRSREKLASMHYDLSRGRVTMSRQGWTTILLIYSETPRRFHARNPFASGGVYEDPATGAATAAFAAYLRDIGWPHGGSI
EVFQGEDMGSPSHLHAEIGTERGGSIRVSGTARLME
>Mature_276_residues
MDVLRIAAFSQGDKGGNPAGVMIADRLPSPQDMQKIAKDVGFSETAFAAPDGESWRVRYFAPEMEVPFCGHATIALGAAL
AMREGDGRFALRLNHDEISVEGRKEGELFAASLQSPRTRNRAATEAEIGQALALFNYEPDDLAHGISPALIHAGADHIVL
PLRSREKLASMHYDLSRGRVTMSRQGWTTILLIYSETPRRFHARNPFASGGVYEDPATGAATAAFAAYLRDIGWPHGGSI
EVFQGEDMGSPSHLHAEIGTERGGSIRVSGTARLME

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=290, Percent_Identity=26.8965517241379, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29831; Mature: 29831

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLRIAAFSQGDKGGNPAGVMIADRLPSPQDMQKIAKDVGFSETAFAAPDGESWRVRYF
CCEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCEEEEEE
APEMEVPFCGHATIALGAALAMREGDGRFALRLNHDEISVEGRKEGELFAASLQSPRTRN
CCCCCCCCCCCHHHHHHHHHEEECCCCEEEEEECCCEEEECCCCCCCEEEEHHCCCCCCC
RAATEAEIGQALALFNYEPDDLAHGISPALIHAGADHIVLPLRSREKLASMHYDLSRGRV
CCHHHHHHHCEEEEECCCHHHHHHCCCHHEEECCCCEEEEECCCHHHHHHHHHHHCCCEE
TMSRQGWTTILLIYSETPRRFHARNPFASGGVYEDPATGAATAAFAAYLRDIGWPHGGSI
EEECCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEE
EVFQGEDMGSPSHLHAEIGTERGGSIRVSGTARLME
EEEECCCCCCCCEEEEECCCCCCCEEEEECCEEECC
>Mature Secondary Structure
MDVLRIAAFSQGDKGGNPAGVMIADRLPSPQDMQKIAKDVGFSETAFAAPDGESWRVRYF
CCEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCEEEEEE
APEMEVPFCGHATIALGAALAMREGDGRFALRLNHDEISVEGRKEGELFAASLQSPRTRN
CCCCCCCCCCCHHHHHHHHHEEECCCCEEEEEECCCEEEECCCCCCCEEEEHHCCCCCCC
RAATEAEIGQALALFNYEPDDLAHGISPALIHAGADHIVLPLRSREKLASMHYDLSRGRV
CCHHHHHHHCEEEEECCCHHHHHHCCCHHEEECCCCEEEEECCCHHHHHHHHHHHCCCEE
TMSRQGWTTILLIYSETPRRFHARNPFASGGVYEDPATGAATAAFAAYLRDIGWPHGGSI
EEECCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEE
EVFQGEDMGSPSHLHAEIGTERGGSIRVSGTARLME
EEEECCCCCCCCEEEEECCCCCCCEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]