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The map label for this gene is ycjS [H]

Identifier: 23100926

GI number: 23100926

Start: 3606437

End: 3607519

Strand: Reverse

Name: ycjS [H]

Synonym: OB3471

Alternate gene names: 23100926

Gene position: 3607519-3606437 (Counterclockwise)

Preceding gene: 23100927

Following gene: 23100925

Centisome position: 99.37

GC content: 40.9

Gene sequence:

>1083_bases
ATGACTAGAACCATTCAAGTAGGGATTATTGGTTGTGGTGGTATTGCTTTTGGAAAGCATTTACCAAGTTTATCAAAGCT
GAACCATGTTAAAATAGTTGCTTTTTGTGATATTGATAGGGAAAAAGCAGAGCGTGCGGCAAAGGAGTATGGAGGAGAAG
ATGCTGTAATTTATGAAGACTACTCTCAGTTAATTGAGCAGTCCTCTGTGGAGGTAGTTCATGTATGTACCCCGAATAAC
TCACATGCGGAGATTAGTATTGCAGCATTACACGGAGGCAAGCATGTGATGTGTGAAAAACCGATGGCAAAAACAGCGGA
AGAAGCCAAGGCAATGATAGATGCAGCTGAAAAATGTAATAAGAAGTTAACAATTGGCTATAACAACCGTTTCCGTACGG
ATAGTCAATATTTAAAAAAAGTATGCCAACGTGGAGATCTTGGTCATATTTATTTTGCAAAAGCACATGCCATTCGCAGA
CGTGCTGTACCAACGTGGGGTGTGTTTTTAGATGAAGAAAAACAAGGCGGTGGACCATTAATTGATATTGGTACACATGC
ACTCGACCTTACGCTTTGGATGATGGATAATTATGAACCAAAATCAGTTATGGGAACAACACATCACCTATTGGGTAAGA
AGAAAGACGCAGCAAATCCGTGGGGAACATGGAATCCAAATGAATTTACAGTAGAAGATGCGGCATTTGGTTTTATTACA
ATGAAAAATGGTGCCACGATTATCTTAGAATCGAGTTGGGCACTAAATTCGTTGGACGTCGATGAGGCAAAATGTTCGCT
AAGTGGTACTGAAGGTGGAGCTGATATGAAGGATGGACTGCGCCTCCACGGTGAGGACTTAGGTGAACTATACACGAAAC
AAGTAGACCTTGGACCAGGCGGTGTCGCTTTTTATGATGGTAATACAGAAAGTGATGCAGAATTAGAAGCAAGGCTGTGG
ATTGAATCGATTATTAATGAAAAAGAGGCAACAGTGCAGCCGAAAGAGGCACTAGTTGTTACCCAAATTCTAGAAGCAAT
CTATCAATCTGCGAAAACGGGGAAAGCAGTATATTTTGATTAG

Upstream 100 bases:

>100_bases
TACCCATTGTAGTACTTGTGCTGATATTCCAGCGTAGAATTGTTTCGGGATTAACGTCAGGGTCTGTAAAGGAATAAAAA
CAGAAGGAGATGGATGTAAC

Downstream 100 bases:

>100_bases
AGGAGTTGAAGGAATATTATACGAGTCGCGTTATTAAGTCGATGGCATGTGCATGCGAATGACTATGCAAAAGAAGCTAT
GGAAAATCATGACATTCAAA

Product: NADH-dependent dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MTRTIQVGIIGCGGIAFGKHLPSLSKLNHVKIVAFCDIDREKAERAAKEYGGEDAVIYEDYSQLIEQSSVEVVHVCTPNN
SHAEISIAALHGGKHVMCEKPMAKTAEEAKAMIDAAEKCNKKLTIGYNNRFRTDSQYLKKVCQRGDLGHIYFAKAHAIRR
RAVPTWGVFLDEEKQGGGPLIDIGTHALDLTLWMMDNYEPKSVMGTTHHLLGKKKDAANPWGTWNPNEFTVEDAAFGFIT
MKNGATIILESSWALNSLDVDEAKCSLSGTEGGADMKDGLRLHGEDLGELYTKQVDLGPGGVAFYDGNTESDAELEARLW
IESIINEKEATVQPKEALVVTQILEAIYQSAKTGKAVYFD

Sequences:

>Translated_360_residues
MTRTIQVGIIGCGGIAFGKHLPSLSKLNHVKIVAFCDIDREKAERAAKEYGGEDAVIYEDYSQLIEQSSVEVVHVCTPNN
SHAEISIAALHGGKHVMCEKPMAKTAEEAKAMIDAAEKCNKKLTIGYNNRFRTDSQYLKKVCQRGDLGHIYFAKAHAIRR
RAVPTWGVFLDEEKQGGGPLIDIGTHALDLTLWMMDNYEPKSVMGTTHHLLGKKKDAANPWGTWNPNEFTVEDAAFGFIT
MKNGATIILESSWALNSLDVDEAKCSLSGTEGGADMKDGLRLHGEDLGELYTKQVDLGPGGVAFYDGNTESDAELEARLW
IESIINEKEATVQPKEALVVTQILEAIYQSAKTGKAVYFD
>Mature_359_residues
TRTIQVGIIGCGGIAFGKHLPSLSKLNHVKIVAFCDIDREKAERAAKEYGGEDAVIYEDYSQLIEQSSVEVVHVCTPNNS
HAEISIAALHGGKHVMCEKPMAKTAEEAKAMIDAAEKCNKKLTIGYNNRFRTDSQYLKKVCQRGDLGHIYFAKAHAIRRR
AVPTWGVFLDEEKQGGGPLIDIGTHALDLTLWMMDNYEPKSVMGTTHHLLGKKKDAANPWGTWNPNEFTVEDAAFGFITM
KNGATIILESSWALNSLDVDEAKCSLSGTEGGADMKDGLRLHGEDLGELYTKQVDLGPGGVAFYDGNTESDAELEARLWI
ESIINEKEATVQPKEALVVTQILEAIYQSAKTGKAVYFD

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=210, Percent_Identity=29.5238095238095, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI1787574, Length=354, Percent_Identity=35.3107344632768, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI87081947, Length=195, Percent_Identity=25.1282051282051, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789848, Length=238, Percent_Identity=29.8319327731092, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87082405, Length=147, Percent_Identity=30.6122448979592, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24581117, Length=204, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 39524; Mature: 39393

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTIQVGIIGCGGIAFGKHLPSLSKLNHVKIVAFCDIDREKAERAAKEYGGEDAVIYED
CCEEEEEEEEEECCHHHHHCCCCHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEHH
YSQLIEQSSVEVVHVCTPNNSHAEISIAALHGGKHVMCEKPMAKTAEEAKAMIDAAEKCN
HHHHHHCCCCCEEEEECCCCCCCEEEEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHCC
KKLTIGYNNRFRTDSQYLKKVCQRGDLGHIYFAKAHAIRRRAVPTWGVFLDEEKQGGGPL
CEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCCEEEECCCCCCCCE
IDIGTHALDLTLWMMDNYEPKSVMGTTHHLLGKKKDAANPWGTWNPNEFTVEDAAFGFIT
EEECCCEEEEEEEEECCCCCHHHHCCHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEE
MKNGATIILESSWALNSLDVDEAKCSLSGTEGGADMKDGLRLHGEDLGELYTKQVDLGPG
ECCCCEEEEECCCCCCCCCCCHHHEEECCCCCCCCCCCCCEECCCHHHHHHHHEECCCCC
GVAFYDGNTESDAELEARLWIESIINEKEATVQPKEALVVTQILEAIYQSAKTGKAVYFD
CEEEECCCCCCCCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEC
>Mature Secondary Structure 
TRTIQVGIIGCGGIAFGKHLPSLSKLNHVKIVAFCDIDREKAERAAKEYGGEDAVIYED
CEEEEEEEEEECCHHHHHCCCCHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEHH
YSQLIEQSSVEVVHVCTPNNSHAEISIAALHGGKHVMCEKPMAKTAEEAKAMIDAAEKCN
HHHHHHCCCCCEEEEECCCCCCCEEEEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHCC
KKLTIGYNNRFRTDSQYLKKVCQRGDLGHIYFAKAHAIRRRAVPTWGVFLDEEKQGGGPL
CEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCCEEEECCCCCCCCE
IDIGTHALDLTLWMMDNYEPKSVMGTTHHLLGKKKDAANPWGTWNPNEFTVEDAAFGFIT
EEECCCEEEEEEEEECCCCCHHHHCCHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEE
MKNGATIILESSWALNSLDVDEAKCSLSGTEGGADMKDGLRLHGEDLGELYTKQVDLGPG
ECCCCEEEEECCCCCCCCCCCHHHEEECCCCCCCCCCCCCEECCCHHHHHHHHEECCCCC
GVAFYDGNTESDAELEARLWIESIINEKEATVQPKEALVVTQILEAIYQSAKTGKAVYFD
CEEEECCCCCCCCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]