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The map label for this gene is yukF [H]

Identifier: 23100679

GI number: 23100679

Start: 3359392

End: 3360639

Strand: Direct

Name: yukF [H]

Synonym: OB3224

Alternate gene names: 23100679

Gene position: 3359392-3360639 (Clockwise)

Preceding gene: 23100655

Following gene: 23100680

Centisome position: 92.53

GC content: 33.73

Gene sequence:

>1248_bases
ATGGATTTAAATATAGATACACTTCACAAACGATTGAATGACATTGTCACTTCACCAAATCAGTTAGCTGATAGCATTGC
TGATCTATTCGAGTGTCCGATTACAATAGAAGATTCTAATCACCATGTGATTTCATATAGCCAGCATAAGGATGACATCG
ACCAGGTACGTATCTCTACTATTATTAATAGAAAAGTGCCAGATAAAGTTATTAATGCTTTCTGGAAGAAAGGGTATATG
CCAAAATTAATTGATAGTGACGATCCCGTCGTGATTCCAGAAATACAAGAAGTAGGACTTGGCAACAGAATCGCTATCTC
TGTTAGAAAACAAAATGAAATATTAGGATTCATCTGGGCACACACCTCTGATAAAACCTTCACAGAAGAAGAAGTATTCC
TTTTTAAAGAAGCTGCCACCTATGTAAAAAAGTATTTCTTGAAAAATCGGCAGCATAATCGAAAATCCGAAGAAGGTTAT
CGTGATTTCTTCTGGCAACTTTTGCGCGGAGATTTACACAACACGGATGATATAAATCGCCAAGCAAAACAATATAACAT
CCAATTAAATGGAGATAAAACGATTGTTGTTATTCGTTTTTCAGATGAAGTGAATGAACAAATGGAAAAACATGCGTATT
ATTTATCCGAGTCTCAAGTGAAAGTAAATGTTATTACGCGCCTATTTGACGATAATGATTTTATTATGTTAGTAGGATTA
CCGAAAGAATCTAATTCAAAACAACTACTGTATGATTTTATTCAACAACTTATCCAGCGTATTGGAGAACAATTAAATCT
AAACACTGTATTAGGGGCTGGCGGGTTACGTTACGAACAACCACAATTAATAGAACAGTCCTTTCACCAAGCGAAAAATG
TGTTAAAACTCCAAGAACAAATACCGGAAAGATTAAATGATATCCTATTATATGAAGATTTAGGAGTATTGCAATTTATC
GATACGCTTGCAGAAACGCGAAAAGATGAGCATTATTACAATCCTTATATGGAAAGACTGCGTTCTTATGATAAACGACA
TCAAACTTCTTTATTAGAAACATTAGATATTTATTTGCAATGCGATAGTAATGTATACCGTGCTGCAAAAGAGCTATTTG
TTCATCCCAATACGATGAATTATCGGTTGAAACGGATTAAAGAAGTAAGTGGAATTGATTTAAAAAACGCGAACCAAAAA
ACAAATATTTATCTTGATTTGCTTATCGATAGCATTCATAAAACATGA

Upstream 100 bases:

>100_bases
TTATATACTATATCATCTTAAATATGAAATATATTTGTGTATATACTAAAATAGACAGATACATATTTGTTTATTTCTTT
AAAAATAATGGAGGAAAAAA

Downstream 100 bases:

>100_bases
TTTGTGCAAATACACAAATCATGTTTTTTTCTTTTATATTTTTTAATGATGAAACCGCTTCAAGAAAGCTGTACGATAAG
GTTAGAAATTGATAAAGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MDLNIDTLHKRLNDIVTSPNQLADSIADLFECPITIEDSNHHVISYSQHKDDIDQVRISTIINRKVPDKVINAFWKKGYM
PKLIDSDDPVVIPEIQEVGLGNRIAISVRKQNEILGFIWAHTSDKTFTEEEVFLFKEAATYVKKYFLKNRQHNRKSEEGY
RDFFWQLLRGDLHNTDDINRQAKQYNIQLNGDKTIVVIRFSDEVNEQMEKHAYYLSESQVKVNVITRLFDDNDFIMLVGL
PKESNSKQLLYDFIQQLIQRIGEQLNLNTVLGAGGLRYEQPQLIEQSFHQAKNVLKLQEQIPERLNDILLYEDLGVLQFI
DTLAETRKDEHYYNPYMERLRSYDKRHQTSLLETLDIYLQCDSNVYRAAKELFVHPNTMNYRLKRIKEVSGIDLKNANQK
TNIYLDLLIDSIHKT

Sequences:

>Translated_415_residues
MDLNIDTLHKRLNDIVTSPNQLADSIADLFECPITIEDSNHHVISYSQHKDDIDQVRISTIINRKVPDKVINAFWKKGYM
PKLIDSDDPVVIPEIQEVGLGNRIAISVRKQNEILGFIWAHTSDKTFTEEEVFLFKEAATYVKKYFLKNRQHNRKSEEGY
RDFFWQLLRGDLHNTDDINRQAKQYNIQLNGDKTIVVIRFSDEVNEQMEKHAYYLSESQVKVNVITRLFDDNDFIMLVGL
PKESNSKQLLYDFIQQLIQRIGEQLNLNTVLGAGGLRYEQPQLIEQSFHQAKNVLKLQEQIPERLNDILLYEDLGVLQFI
DTLAETRKDEHYYNPYMERLRSYDKRHQTSLLETLDIYLQCDSNVYRAAKELFVHPNTMNYRLKRIKEVSGIDLKNANQK
TNIYLDLLIDSIHKT
>Mature_415_residues
MDLNIDTLHKRLNDIVTSPNQLADSIADLFECPITIEDSNHHVISYSQHKDDIDQVRISTIINRKVPDKVINAFWKKGYM
PKLIDSDDPVVIPEIQEVGLGNRIAISVRKQNEILGFIWAHTSDKTFTEEEVFLFKEAATYVKKYFLKNRQHNRKSEEGY
RDFFWQLLRGDLHNTDDINRQAKQYNIQLNGDKTIVVIRFSDEVNEQMEKHAYYLSESQVKVNVITRLFDDNDFIMLVGL
PKESNSKQLLYDFIQQLIQRIGEQLNLNTVLGAGGLRYEQPQLIEQSFHQAKNVLKLQEQIPERLNDILLYEDLGVLQFI
DTLAETRKDEHYYNPYMERLRSYDKRHQTSLLETLDIYLQCDSNVYRAAKELFVHPNTMNYRLKRIKEVSGIDLKNANQK
TNIYLDLLIDSIHKT

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=345, Percent_Identity=24.3478260869565, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010312 [H]

Pfam domain/function: PF06018 CodY [H]

EC number: NA

Molecular weight: Translated: 48728; Mature: 48728

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNIDTLHKRLNDIVTSPNQLADSIADLFECPITIEDSNHHVISYSQHKDDIDQVRIST
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECCCCEEEEECCCCCHHHHHHHHH
IINRKVPDKVINAFWKKGYMPKLIDSDDPVVIPEIQEVGLGNRIAISVRKQNEILGFIWA
HHCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCHHHCCCCCEEEEEEEECCCEEEEEEE
HTSDKTFTEEEVFLFKEAATYVKKYFLKNRQHNRKSEEGYRDFFWQLLRGDLHNTDDINR
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHH
QAKQYNIQLNGDKTIVVIRFSDEVNEQMEKHAYYLSESQVKVNVITRLFDDNDFIMLVGL
HHHHEEEEECCCCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCEEEEEEC
PKESNSKQLLYDFIQQLIQRIGEQLNLNTVLGAGGLRYEQPQLIEQSFHQAKNVLKLQEQ
CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IPERLNDILLYEDLGVLQFIDTLAETRKDEHYYNPYMERLRSYDKRHQTSLLETLDIYLQ
HHHHHHHEEHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEE
CDSNVYRAAKELFVHPNTMNYRLKRIKEVSGIDLKNANQKTNIYLDLLIDSIHKT
ECCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHCC
>Mature Secondary Structure
MDLNIDTLHKRLNDIVTSPNQLADSIADLFECPITIEDSNHHVISYSQHKDDIDQVRIST
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECCCCEEEEECCCCCHHHHHHHHH
IINRKVPDKVINAFWKKGYMPKLIDSDDPVVIPEIQEVGLGNRIAISVRKQNEILGFIWA
HHCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCHHHCCCCCEEEEEEEECCCEEEEEEE
HTSDKTFTEEEVFLFKEAATYVKKYFLKNRQHNRKSEEGYRDFFWQLLRGDLHNTDDINR
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHH
QAKQYNIQLNGDKTIVVIRFSDEVNEQMEKHAYYLSESQVKVNVITRLFDDNDFIMLVGL
HHHHEEEEECCCCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCEEEEEEC
PKESNSKQLLYDFIQQLIQRIGEQLNLNTVLGAGGLRYEQPQLIEQSFHQAKNVLKLQEQ
CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IPERLNDILLYEDLGVLQFIDTLAETRKDEHYYNPYMERLRSYDKRHQTSLLETLDIYLQ
HHHHHHHEEHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEE
CDSNVYRAAKELFVHPNTMNYRLKRIKEVSGIDLKNANQKTNIYLDLLIDSIHKT
ECCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9168598; 9384377 [H]