Click here to switch to the map view.

The map label for this gene is ywqM [H]

Identifier: 23100636

GI number: 23100636

Start: 3311808

End: 3312671

Strand: Reverse

Name: ywqM [H]

Synonym: OB3181

Alternate gene names: 23100636

Gene position: 3312671-3311808 (Counterclockwise)

Preceding gene: 23100638

Following gene: 23100635

Centisome position: 91.24

GC content: 36.46

Gene sequence:

>864_bases
ATGGAGTTAAGGCATCTAGTGACATTTAAAACAATAGTAGATAAAGGCGGATTTAAAAAAGCTGCAGATGAACTAGGCTA
TGCTCAATCTTCTATTACAGCACATATTCATGATCTTGAATCAGAATTAGAAATTCCTTTGTTTAATCGTATGGGGAAAA
GTATAAGCCTAACGCAGGCAGGAGAAACGTTTCTTCCCTATGCTATGGAAATTATTGACCTGTATTCCGAATCCAAAGAT
CGATTAAGGAATACGGAAGAACCTTCTGGAATAGTAATCATTGGTGCGAGTGAAACGTTAATGATCCATTGGCTCCCGAG
TATTTTGGGGGAATTTATGGAGAAATATCCCAAAGTAGAAGTAGTGTTAAAATCATTACGGTTTGAAGATGTTCATAGTC
AATTAAAGAGTGGAGAGATTGATATTGCTTTCCTTGTTGATCTTGAAAATTGGACACAGAAAGATGTCTGGGCGAAAAAA
ATTAGACAAGAAGAACTCGTTCATATACTTCCAGGAAAGAACGAGAGAAGACCTTTTTCACCGCGGATGCTAACAACAGA
GTATAAATGTAGTTGGCGCCCGATTATGGAAGAATATATGAATACTACTACAGATATCAATATGAAGGCAATTGAATTGC
CTAGTGTAGAAGCTATTAAAAAGAGTGTAATATGTAATCTCGGTCAATCGATCGTACCCCGATTTGTAGTTGAGAAAGAA
CTCAAAGATGGGGAATTAATAGAATACCCTAATTCTAAGGTGAAACAGGAACTAGCTATCTTCCAAGCTATTCACAAAGA
TAAATGGGTATCTAAAAGCATGTCGGTGTTTATCGACTATCTAGATATCGCAGAGCAATTATAA

Upstream 100 bases:

>100_bases
TTGAAAATGTGTTATATCTAGTTTAAAGTAATGAGTGTATACAGTAAAATTGAATTATTAGATATTAACGTTCAGTAATT
TTGATAATATGGAGGGTGAA

Downstream 100 bases:

>100_bases
AGTAAACAACTATTGAGGGAGGTTCTAAGATGGATAAAAATGAAGTAATTGATTTAGCAAGGAAACATGGGATACAAGTA
AAAGAGGATACAGTGAAATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MELRHLVTFKTIVDKGGFKKAADELGYAQSSITAHIHDLESELEIPLFNRMGKSISLTQAGETFLPYAMEIIDLYSESKD
RLRNTEEPSGIVIIGASETLMIHWLPSILGEFMEKYPKVEVVLKSLRFEDVHSQLKSGEIDIAFLVDLENWTQKDVWAKK
IRQEELVHILPGKNERRPFSPRMLTTEYKCSWRPIMEEYMNTTTDINMKAIELPSVEAIKKSVICNLGQSIVPRFVVEKE
LKDGELIEYPNSKVKQELAIFQAIHKDKWVSKSMSVFIDYLDIAEQL

Sequences:

>Translated_287_residues
MELRHLVTFKTIVDKGGFKKAADELGYAQSSITAHIHDLESELEIPLFNRMGKSISLTQAGETFLPYAMEIIDLYSESKD
RLRNTEEPSGIVIIGASETLMIHWLPSILGEFMEKYPKVEVVLKSLRFEDVHSQLKSGEIDIAFLVDLENWTQKDVWAKK
IRQEELVHILPGKNERRPFSPRMLTTEYKCSWRPIMEEYMNTTTDINMKAIELPSVEAIKKSVICNLGQSIVPRFVVEKE
LKDGELIEYPNSKVKQELAIFQAIHKDKWVSKSMSVFIDYLDIAEQL
>Mature_287_residues
MELRHLVTFKTIVDKGGFKKAADELGYAQSSITAHIHDLESELEIPLFNRMGKSISLTQAGETFLPYAMEIIDLYSESKD
RLRNTEEPSGIVIIGASETLMIHWLPSILGEFMEKYPKVEVVLKSLRFEDVHSQLKSGEIDIAFLVDLENWTQKDVWAKK
IRQEELVHILPGKNERRPFSPRMLTTEYKCSWRPIMEEYMNTTTDINMKAIELPSVEAIKKSVICNLGQSIVPRFVVEKE
LKDGELIEYPNSKVKQELAIFQAIHKDKWVSKSMSVFIDYLDIAEQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=293, Percent_Identity=30.3754266211604, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=26.1016949152542, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787806, Length=295, Percent_Identity=22.7118644067797, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1786401, Length=301, Percent_Identity=26.2458471760797, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788887, Length=145, Percent_Identity=31.0344827586207, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI157672245, Length=142, Percent_Identity=26.7605633802817, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081904, Length=145, Percent_Identity=28.9655172413793, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=156, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=146, Percent_Identity=25.3424657534247, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787128, Length=129, Percent_Identity=35.6589147286822, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=149, Percent_Identity=29.5302013422819, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787601, Length=143, Percent_Identity=23.7762237762238, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789173, Length=149, Percent_Identity=26.1744966442953, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=30.3448275862069, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33038; Mature: 33038

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRHLVTFKTIVDKGGFKKAADELGYAQSSITAHIHDLESELEIPLFNRMGKSISLTQA
CCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEECCC
GETFLPYAMEIIDLYSESKDRLRNTEEPSGIVIIGASETLMIHWLPSILGEFMEKYPKVE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHCCHHH
VVLKSLRFEDVHSQLKSGEIDIAFLVDLENWTQKDVWAKKIRQEELVHILPGKNERRPFS
HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCC
PRMLTTEYKCSWRPIMEEYMNTTTDINMKAIELPSVEAIKKSVICNLGQSIVPRFVVEKE
CCEEEECCCCCCHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHH
LKDGELIEYPNSKVKQELAIFQAIHKDKWVSKSMSVFIDYLDIAEQL
CCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELRHLVTFKTIVDKGGFKKAADELGYAQSSITAHIHDLESELEIPLFNRMGKSISLTQA
CCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEECCC
GETFLPYAMEIIDLYSESKDRLRNTEEPSGIVIIGASETLMIHWLPSILGEFMEKYPKVE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHCCHHH
VVLKSLRFEDVHSQLKSGEIDIAFLVDLENWTQKDVWAKKIRQEELVHILPGKNERRPFS
HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCC
PRMLTTEYKCSWRPIMEEYMNTTTDINMKAIELPSVEAIKKSVICNLGQSIVPRFVVEKE
CCEEEECCCCCCHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHH
LKDGELIEYPNSKVKQELAIFQAIHKDKWVSKSMSVFIDYLDIAEQL
CCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]