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The map label for this gene is potC [H]

Identifier: 23100611

GI number: 23100611

Start: 3286651

End: 3287454

Strand: Direct

Name: potC [H]

Synonym: OB3156

Alternate gene names: 23100611

Gene position: 3286651-3287454 (Clockwise)

Preceding gene: 23100610

Following gene: 23100612

Centisome position: 90.53

GC content: 33.33

Gene sequence:

>804_bases
ATGGAGAATAAATCCTCTTCATTCGCTAATATTTTTCTAGTCCTTATATTTTTCATTTTATATGCTCCAATCTTTTATTT
AATCTTTTATTCATTCAATAGTGGTGGAACGATGAGTGGATTCGAAGGTTTTACTTTTGATTGGTATCGAGAATTATTCC
AAGATACTCGCTTATTGATTATAGTGCTAAACACCTTGGTAATTGCGCTCTTGTCTGCACTAATTGCTACAATAATTGGT
GTTTTTGGTGCTATCAGCATCCGATCTTATAAAAAAAGACGAACTCGCAATTCGCTTTTATCATTGAATAATGTGCTTAT
TGTAAGTCCTGATGTAATTATTGGTGCTAGCTTTTTAATTTTATTTACGTTGGCAGGAATTCAGTTAGGATTTTATTCCG
TTCTCTTATCTCATATTGCTTTTAGTATACCTATTGTTGTATTAATGGTACTCCCTAAACTTCTTGAAATGAGTTCTTCT
TTAGAGGATGCCGCTCGAGATTTAGGAGCAAGTAATTGGAATGTCCTGACAAAAGTTACACTACCTTATATATCACCAGG
AATTTTTGCTGGATTTTTCATGGCATTAACCTATTCACTTGATGATTTTGCAGTAACTTTCTTTGTAACTGGTAACGGCT
TTTCCACACTGTCTGTTGAAATTTATTCATTAGCTAGAAGAGGAATATCGCTAAATATTAACGCCTTATCAACTATTATG
TTTATCGTAACAATACTTCTTGTAATTGTTTATTACTATCTTACACAGCGTAGTGGAACGAAAGGAGTTGGCTTGAGACG
ATGA

Upstream 100 bases:

>100_bases
ACCCAAAACTGGGGCATGGGAGCTACCATTGCAGTGTTCCTAATCATTATTATGGTAGGATTTATGGCATTAACATCGTT
ACGAAGGAGAGGTGTGTAAT

Downstream 100 bases:

>100_bases
AATCTATTATGCGATCGTTAAGTGCCATACTCATTGTGTCGATTGTTTTACTTATAATGATTAATCGCCTCAATGCTGCA
CAAGGTTTTTCCGGTGATAA

Product: spermidine:putrescine ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MENKSSSFANIFLVLIFFILYAPIFYLIFYSFNSGGTMSGFEGFTFDWYRELFQDTRLLIIVLNTLVIALLSALIATIIG
VFGAISIRSYKKRRTRNSLLSLNNVLIVSPDVIIGASFLILFTLAGIQLGFYSVLLSHIAFSIPIVVLMVLPKLLEMSSS
LEDAARDLGASNWNVLTKVTLPYISPGIFAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSLARRGISLNINALSTIM
FIVTILLVIVYYYLTQRSGTKGVGLRR

Sequences:

>Translated_267_residues
MENKSSSFANIFLVLIFFILYAPIFYLIFYSFNSGGTMSGFEGFTFDWYRELFQDTRLLIIVLNTLVIALLSALIATIIG
VFGAISIRSYKKRRTRNSLLSLNNVLIVSPDVIIGASFLILFTLAGIQLGFYSVLLSHIAFSIPIVVLMVLPKLLEMSSS
LEDAARDLGASNWNVLTKVTLPYISPGIFAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSLARRGISLNINALSTIM
FIVTILLVIVYYYLTQRSGTKGVGLRR
>Mature_267_residues
MENKSSSFANIFLVLIFFILYAPIFYLIFYSFNSGGTMSGFEGFTFDWYRELFQDTRLLIIVLNTLVIALLSALIATIIG
VFGAISIRSYKKRRTRNSLLSLNNVLIVSPDVIIGASFLILFTLAGIQLGFYSVLLSHIAFSIPIVVLMVLPKLLEMSSS
LEDAARDLGASNWNVLTKVTLPYISPGIFAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSLARRGISLNINALSTIM
FIVTILLVIVYYYLTQRSGTKGVGLRR

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=232, Percent_Identity=38.7931034482759, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787081, Length=262, Percent_Identity=33.206106870229, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1787714, Length=251, Percent_Identity=27.4900398406374, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788764, Length=176, Percent_Identity=32.9545454545455, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29662; Mature: 29662

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKSSSFANIFLVLIFFILYAPIFYLIFYSFNSGGTMSGFEGFTFDWYRELFQDTRLLI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHH
IVLNTLVIALLSALIATIIGVFGAISIRSYKKRRTRNSLLSLNNVLIVSPDVIIGASFLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHH
LFTLAGIQLGFYSVLLSHIAFSIPIVVLMVLPKLLEMSSSLEDAARDLGASNWNVLTKVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
LPYISPGIFAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSLARRGISLNINALSTIM
CCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEHHHHHHHH
FIVTILLVIVYYYLTQRSGTKGVGLRR
HHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MENKSSSFANIFLVLIFFILYAPIFYLIFYSFNSGGTMSGFEGFTFDWYRELFQDTRLLI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHH
IVLNTLVIALLSALIATIIGVFGAISIRSYKKRRTRNSLLSLNNVLIVSPDVIIGASFLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHH
LFTLAGIQLGFYSVLLSHIAFSIPIVVLMVLPKLLEMSSSLEDAARDLGASNWNVLTKVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
LPYISPGIFAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSLARRGISLNINALSTIM
CCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEHHHHHHHH
FIVTILLVIVYYYLTQRSGTKGVGLRR
HHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]