Click here to switch to the map view.

The map label for this gene is ypdB [C]

Identifier: 23100571

GI number: 23100571

Start: 3247090

End: 3247734

Strand: Reverse

Name: ypdB [C]

Synonym: OB3116

Alternate gene names: 23100571

Gene position: 3247734-3247090 (Counterclockwise)

Preceding gene: 23100573

Following gene: 23100570

Centisome position: 89.46

GC content: 34.26

Gene sequence:

>645_bases
ATGAAGCAACTAAGTTTAAGTTCATTATTAGATGTAATGGTAGAATTGTTTTCGGAAGAAGTATCAATTGCAATTACAAA
TAAGCATGAATATGTTTATTACCGACGAAGTAAGCGTATTGATTTGAAGATTCATGAAGGCGATCCAATAAAAAAAGGAA
CGCTAGCTTATAAAGCAATTACAACAAATAAAAAAGTATCCGAATTTATTGATCGAAATATATATGGTGTGCCTTATCAT
GGTATGGCGGTACCTTATTATAATGAGGATGAAATGGAAGGTTGTGTACTTGCGATCTATCCAGCTTATACAGAGGGGAA
ATCAGTGGTTACCGTACGTAGTCAAGACGGTTGGAAACCAATACCTTTTTCTGAGTTAATTTATTTAGAAGCAAAGGAAC
GTAAAACATATGCTGTAGCTCAAGACTATGCTGGATTTCACACAAATACATTACAGGAGTTTGAGTTCATGCTGCCTACA
GATGTCTTTATACGCTGCCATCGTTCTTATATTGTCAATGTGAATAATATAGAAGAGATTTATCCGGATACTCATTCTAC
TTTTATGCTCGGTATGAAGAATGGGGAACAAGTGCCGGTAAGTCAATCATATTCTAGTTATTTCCGAAAATTATTAGGAT
TTTAA

Upstream 100 bases:

>100_bases
AATTTTTTATCAAACAAAATTGTGAAAATAATGTACTTGCCTTGGGTCATTTCTTATTCATGATATAATCTAATGAGAGT
AATGATAAGGGGAATGTTCT

Downstream 100 bases:

>100_bases
CAGGATTATGCTGTTTAAATCATCGATTGCTGTATATTAAGCGCATTATTCTTTTTTTCTTCTAAATCTCCCGATTAATT
AGAAAAATCAGTTAAGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: Sensory Transduction Protein Lytt; Response Regulator Receiver Domain-Containing Protein; Methyl-Accepting/DNA Response Regulator; Two-Component Response Regulator; Two-Component System Response-Regulator; LytTR Family Transcriptional Regulator; Response Regulator Receiver Protein

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MKQLSLSSLLDVMVELFSEEVSIAITNKHEYVYYRRSKRIDLKIHEGDPIKKGTLAYKAITTNKKVSEFIDRNIYGVPYH
GMAVPYYNEDEMEGCVLAIYPAYTEGKSVVTVRSQDGWKPIPFSELIYLEAKERKTYAVAQDYAGFHTNTLQEFEFMLPT
DVFIRCHRSYIVNVNNIEEIYPDTHSTFMLGMKNGEQVPVSQSYSSYFRKLLGF

Sequences:

>Translated_214_residues
MKQLSLSSLLDVMVELFSEEVSIAITNKHEYVYYRRSKRIDLKIHEGDPIKKGTLAYKAITTNKKVSEFIDRNIYGVPYH
GMAVPYYNEDEMEGCVLAIYPAYTEGKSVVTVRSQDGWKPIPFSELIYLEAKERKTYAVAQDYAGFHTNTLQEFEFMLPT
DVFIRCHRSYIVNVNNIEEIYPDTHSTFMLGMKNGEQVPVSQSYSSYFRKLLGF
>Mature_214_residues
MKQLSLSSLLDVMVELFSEEVSIAITNKHEYVYYRRSKRIDLKIHEGDPIKKGTLAYKAITTNKKVSEFIDRNIYGVPYH
GMAVPYYNEDEMEGCVLAIYPAYTEGKSVVTVRSQDGWKPIPFSELIYLEAKERKTYAVAQDYAGFHTNTLQEFEFMLPT
DVFIRCHRSYIVNVNNIEEIYPDTHSTFMLGMKNGEQVPVSQSYSSYFRKLLGF

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788724, Length=92, Percent_Identity=36.9565217391304, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24781; Mature: 24781

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLSLSSLLDVMVELFSEEVSIAITNKHEYVYYRRSKRIDLKIHEGDPIKKGTLAYKAI
CCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEE
TTNKKVSEFIDRNIYGVPYHGMAVPYYNEDEMEGCVLAIYPAYTEGKSVVTVRSQDGWKP
ECCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCC
IPFSELIYLEAKERKTYAVAQDYAGFHTNTLQEFEFMLPTDVFIRCHRSYIVNVNNIEEI
CCHHHEEEEEECCCCEEEEHHHCCCCCCCCHHHHHCCCCHHHHEEEECEEEEECCCHHHH
YPDTHSTFMLGMKNGEQVPVSQSYSSYFRKLLGF
CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKQLSLSSLLDVMVELFSEEVSIAITNKHEYVYYRRSKRIDLKIHEGDPIKKGTLAYKAI
CCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEE
TTNKKVSEFIDRNIYGVPYHGMAVPYYNEDEMEGCVLAIYPAYTEGKSVVTVRSQDGWKP
ECCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCC
IPFSELIYLEAKERKTYAVAQDYAGFHTNTLQEFEFMLPTDVFIRCHRSYIVNVNNIEEI
CCHHHEEEEEECCCCEEEEHHHCCCCCCCCHHHHHCCCCHHHHEEEECEEEEECCCHHHH
YPDTHSTFMLGMKNGEQVPVSQSYSSYFRKLLGF
CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA