Click here to switch to the map view.

The map label for this gene is ypvA [H]

Identifier: 23100569

GI number: 23100569

Start: 3243213

End: 3245117

Strand: Reverse

Name: ypvA [H]

Synonym: OB3114

Alternate gene names: 23100569

Gene position: 3245117-3243213 (Counterclockwise)

Preceding gene: 23100570

Following gene: 23100568

Centisome position: 89.38

GC content: 36.12

Gene sequence:

>1905_bases
ATGACTGAAAAAAAATCACTACCATTTACTGTTTCAAAAAACGAAAGATTTTTTGAACGATTAGGAGATTATATTGGCGA
TGTCTTCTATGATATATTGCCTGAAAAAGGTTTTGAACTCCGTGATGAGCAAATTTATATGGCTTTTCAGCTGGAGCAAG
CTTTTAAACATAAAAGAACGATGTTTGCAGAAGCGGGCGTAGGTACTGGCAAAACAATCGTTTATTTACTATATGCAATT
TGTTATGCCCGTTATATGGGGAGGCCTGTAATTATTTCATGCGCCGATGAAACGTTGATCGAACAGCTTGTCAAAGAAGG
CGGAGATATTGATAAGTTAGAGAAAGCACTAGACTTAGAAGTAGATGTTAGACTTGCAAAAGCAAGAGAAAACTATGTAT
GTATGAAAAAACTAGATCCTTTAATAGAGAAAATCAATGATGAAGATATATTAGCTGTACATGATCAAATCCCTGATTTT
GTATTTGAACAAGGAGTCTCGATGCAATCCTTTTATCGGTATGGGGATCGTAAAGAGTATCCATGGGTGTCCGATCGACA
ATGGGAACAAATTGGTTGGGATCCATTAAAACAATGTGCGACATGTGATTGGAGACATCGAAGTGCGCAAACCTTAAACC
GTGAATACTATCGTCATGCACAAGATCTTATTATTTGTTCGCATGATTTCTATATGGAGCATGTCTGGACAAAAGAATCA
CGTAAACGTGAAGGGCAATTGCCACTGCTTCCTGAAGCAAGTTCTGTTATTTTTGATGAAGGACATTTATTAGAGTTTGC
AGCACAAAAAGGACTTACTTATCGTTTTAATTTTAATAATATTACAAGTGTATTGACTGGATATACTGGTCAAGATGTAC
GAGAGGAATCACTACAATTAGCAGAGGATATCTTATCCCTACATGATGAATGGTTTGATGTTATTACCAGTAGTGCGATA
AATATTGAAGGGTCCGATCGATTAGAAATTCCTCGCAGTGAACCGATGTTAGAAATGGCAAGACGATTAGATAAAATGGT
GGAGGAATTATTAGAACAGCTTGTATTTGATGCAGAGCTTTTTACAATTGATGCTTACCATACCAAGATTATCGAAGAAT
ATCTAGAGTTTTTTTCTTATGGTCTATCTATTCTATTAAATGATGATGAAGGAATTTACTGGTTAGAACAAGATGAAACC
AATAGTAGTCTTGTTATTATGCCAAGGTTGGTGGAGAAAGTATTACGAGAAGAAGTATTCTCACAAAATATTCCGTTTAT
ATTTTCTTCTGCTACTTTATCTCAGGACAATGACTTTTCCTATTTGCAAAAGAGTTTAGGTATTGGACAGTACGATTATT
TTTCGGTGGACTCTCCGTTTGATTATGAATCAAATCGAGAAATAACACTTCATTCTTATCAGGATTCAGATGAGCGATTC
AAAGGAATACAAGAACAGTTAAATCACAATCAAGGGCATAGCTTAGTTCTGTTCCGTTCAGAAGTAGATATGAATGAGTT
TCGTCAATGGGCTAATAAGCAGAATTGGGAATACGCAATGCTTTATGAAGGAGATCAAGAAATCAGCGAAATTGTCCGTA
GATTTCAGTATGATGTACCATCTGTTTTATGTGCTTATCATTTATGGGAGGGGTTGGATATCCCAGGAAAAGCACTTAGC
CAAGTTATTATTGCTTCCTTACCATATCCGCCGAATGATCCTGTATTCAAGGCAAAGCGGAAATACACCAAAGATTCGTT
ACATGAAATTGATATTCCGTACATGATGTTACGGATGAAACAAGGAATTGGTCGTCTTATTCGTACAGAAAGTGATTCAG
GAGTCGTTCATATATGGAAACATGCTACGGATGCTACGGTGCTAGATTCATTATTAAATAATTGA

Upstream 100 bases:

>100_bases
AATGGTACGATGAGGGTTGTTTAATGGTGATGTTCAAAAAGTATGGGATAAATATCCTTTTTGGACTCACAGATAAATAC
GTTAGTTGAAGGAGTCTATA

Downstream 100 bases:

>100_bases
TGAAGTAATACTCGAGTGATGTGGATGCATTGCTCGAGTTTTTTGAAACTTTTATTATCAGATAAACGTATTGCTTAATA
GAGGTGGAGTGATACGATGA

Product: ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 634; Mature: 633

Protein sequence:

>634_residues
MTEKKSLPFTVSKNERFFERLGDYIGDVFYDILPEKGFELRDEQIYMAFQLEQAFKHKRTMFAEAGVGTGKTIVYLLYAI
CYARYMGRPVIISCADETLIEQLVKEGGDIDKLEKALDLEVDVRLAKARENYVCMKKLDPLIEKINDEDILAVHDQIPDF
VFEQGVSMQSFYRYGDRKEYPWVSDRQWEQIGWDPLKQCATCDWRHRSAQTLNREYYRHAQDLIICSHDFYMEHVWTKES
RKREGQLPLLPEASSVIFDEGHLLEFAAQKGLTYRFNFNNITSVLTGYTGQDVREESLQLAEDILSLHDEWFDVITSSAI
NIEGSDRLEIPRSEPMLEMARRLDKMVEELLEQLVFDAELFTIDAYHTKIIEEYLEFFSYGLSILLNDDEGIYWLEQDET
NSSLVIMPRLVEKVLREEVFSQNIPFIFSSATLSQDNDFSYLQKSLGIGQYDYFSVDSPFDYESNREITLHSYQDSDERF
KGIQEQLNHNQGHSLVLFRSEVDMNEFRQWANKQNWEYAMLYEGDQEISEIVRRFQYDVPSVLCAYHLWEGLDIPGKALS
QVIIASLPYPPNDPVFKAKRKYTKDSLHEIDIPYMMLRMKQGIGRLIRTESDSGVVHIWKHATDATVLDSLLNN

Sequences:

>Translated_634_residues
MTEKKSLPFTVSKNERFFERLGDYIGDVFYDILPEKGFELRDEQIYMAFQLEQAFKHKRTMFAEAGVGTGKTIVYLLYAI
CYARYMGRPVIISCADETLIEQLVKEGGDIDKLEKALDLEVDVRLAKARENYVCMKKLDPLIEKINDEDILAVHDQIPDF
VFEQGVSMQSFYRYGDRKEYPWVSDRQWEQIGWDPLKQCATCDWRHRSAQTLNREYYRHAQDLIICSHDFYMEHVWTKES
RKREGQLPLLPEASSVIFDEGHLLEFAAQKGLTYRFNFNNITSVLTGYTGQDVREESLQLAEDILSLHDEWFDVITSSAI
NIEGSDRLEIPRSEPMLEMARRLDKMVEELLEQLVFDAELFTIDAYHTKIIEEYLEFFSYGLSILLNDDEGIYWLEQDET
NSSLVIMPRLVEKVLREEVFSQNIPFIFSSATLSQDNDFSYLQKSLGIGQYDYFSVDSPFDYESNREITLHSYQDSDERF
KGIQEQLNHNQGHSLVLFRSEVDMNEFRQWANKQNWEYAMLYEGDQEISEIVRRFQYDVPSVLCAYHLWEGLDIPGKALS
QVIIASLPYPPNDPVFKAKRKYTKDSLHEIDIPYMMLRMKQGIGRLIRTESDSGVVHIWKHATDATVLDSLLNN
>Mature_633_residues
TEKKSLPFTVSKNERFFERLGDYIGDVFYDILPEKGFELRDEQIYMAFQLEQAFKHKRTMFAEAGVGTGKTIVYLLYAIC
YARYMGRPVIISCADETLIEQLVKEGGDIDKLEKALDLEVDVRLAKARENYVCMKKLDPLIEKINDEDILAVHDQIPDFV
FEQGVSMQSFYRYGDRKEYPWVSDRQWEQIGWDPLKQCATCDWRHRSAQTLNREYYRHAQDLIICSHDFYMEHVWTKESR
KREGQLPLLPEASSVIFDEGHLLEFAAQKGLTYRFNFNNITSVLTGYTGQDVREESLQLAEDILSLHDEWFDVITSSAIN
IEGSDRLEIPRSEPMLEMARRLDKMVEELLEQLVFDAELFTIDAYHTKIIEEYLEFFSYGLSILLNDDEGIYWLEQDETN
SSLVIMPRLVEKVLREEVFSQNIPFIFSSATLSQDNDFSYLQKSLGIGQYDYFSVDSPFDYESNREITLHSYQDSDERFK
GIQEQLNHNQGHSLVLFRSEVDMNEFRQWANKQNWEYAMLYEGDQEISEIVRRFQYDVPSVLCAYHLWEGLDIPGKALSQ
VIIASLPYPPNDPVFKAKRKYTKDSLHEIDIPYMMLRMKQGIGRLIRTESDSGVVHIWKHATDATVLDSLLNN

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=622, Percent_Identity=26.3665594855305, Blast_Score=156, Evalue=4e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014013
- InterPro:   IPR006555 [H]

Pfam domain/function: NA

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 74180; Mature: 74048

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKKSLPFTVSKNERFFERLGDYIGDVFYDILPEKGFELRDEQIYMAFQLEQAFKHKRT
CCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHH
MFAEAGVGTGKTIVYLLYAICYARYMGRPVIISCADETLIEQLVKEGGDIDKLEKALDLE
HHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHCCH
VDVRLAKARENYVCMKKLDPLIEKINDEDILAVHDQIPDFVFEQGVSMQSFYRYGDRKEY
HHHEEHHHCCCEEHHHHHHHHHHHCCCCCEEEEHHHCHHHHHHCCCCHHHHHHCCCCCCC
PWVSDRQWEQIGWDPLKQCATCDWRHRSAQTLNREYYRHAQDLIICSHDFYMEHVWTKES
CCCCCCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHCHHH
RKREGQLPLLPEASSVIFDEGHLLEFAAQKGLTYRFNFNNITSVLTGYTGQDVREESLQL
HHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCEEEECCHHHHHHHCCCCCCHHHHHHHHH
AEDILSLHDEWFDVITSSAINIEGSDRLEIPRSEPMLEMARRLDKMVEELLEQLVFDAEL
HHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
FTIDAYHTKIIEEYLEFFSYGLSILLNDDEGIYWLEQDETNSSLVIMPRLVEKVLREEVF
EEEHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHH
SQNIPFIFSSATLSQDNDFSYLQKSLGIGQYDYFSVDSPFDYESNREITLHSYQDSDERF
HCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEECCCCCHHHH
KGIQEQLNHNQGHSLVLFRSEVDMNEFRQWANKQNWEYAMLYEGDQEISEIVRRFQYDVP
HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCHH
SVLCAYHLWEGLDIPGKALSQVIIASLPYPPNDPVFKAKRKYTKDSLHEIDIPYMMLRMK
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
QGIGRLIRTESDSGVVHIWKHATDATVLDSLLNN
HHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHCC
>Mature Secondary Structure 
TEKKSLPFTVSKNERFFERLGDYIGDVFYDILPEKGFELRDEQIYMAFQLEQAFKHKRT
CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHH
MFAEAGVGTGKTIVYLLYAICYARYMGRPVIISCADETLIEQLVKEGGDIDKLEKALDLE
HHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHCCH
VDVRLAKARENYVCMKKLDPLIEKINDEDILAVHDQIPDFVFEQGVSMQSFYRYGDRKEY
HHHEEHHHCCCEEHHHHHHHHHHHCCCCCEEEEHHHCHHHHHHCCCCHHHHHHCCCCCCC
PWVSDRQWEQIGWDPLKQCATCDWRHRSAQTLNREYYRHAQDLIICSHDFYMEHVWTKES
CCCCCCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHCHHH
RKREGQLPLLPEASSVIFDEGHLLEFAAQKGLTYRFNFNNITSVLTGYTGQDVREESLQL
HHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCEEEECCHHHHHHHCCCCCCHHHHHHHHH
AEDILSLHDEWFDVITSSAINIEGSDRLEIPRSEPMLEMARRLDKMVEELLEQLVFDAEL
HHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
FTIDAYHTKIIEEYLEFFSYGLSILLNDDEGIYWLEQDETNSSLVIMPRLVEKVLREEVF
EEEHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHH
SQNIPFIFSSATLSQDNDFSYLQKSLGIGQYDYFSVDSPFDYESNREITLHSYQDSDERF
HCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEECCCCCHHHH
KGIQEQLNHNQGHSLVLFRSEVDMNEFRQWANKQNWEYAMLYEGDQEISEIVRRFQYDVP
HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCHH
SVLCAYHLWEGLDIPGKALSQVIIASLPYPPNDPVFKAKRKYTKDSLHEIDIPYMMLRMK
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
QGIGRLIRTESDSGVVHIWKHATDATVLDSLLNN
HHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]